@optave/codegraph 3.9.3 → 3.9.5

package/README.md

@@ -617,18 +617,18 @@ Codegraph also extracts symbols from common callback patterns: Commander `.comma
 
 Self-measured on every release via CI ([build benchmarks](generated/benchmarks/BUILD-BENCHMARKS.md) | [embedding benchmarks](generated/benchmarks/EMBEDDING-BENCHMARKS.md) | [query benchmarks](generated/benchmarks/QUERY-BENCHMARKS.md) | [incremental benchmarks](generated/benchmarks/INCREMENTAL-BENCHMARKS.md) | [resolution precision/recall](tests/benchmarks/resolution/)):
 
-*Last updated: v3.9.2 (2026-04-09)*
+*Last updated: v3.9.4 (2026-04-18)*
 
 | Metric | Native | WASM |
 |---|---|---|
-| Build speed | **15.7 ms/file** | **15 ms/file** |
-| Query time | **27ms** | **40ms** |
-| No-op rebuild | **9ms** | **20ms** |
-| 1-file rebuild | **558ms** | **624ms** |
-| Query: fn-deps | **2.3ms** | **2.4ms** |
-| Query: path | **2.5ms** | **2.4ms** |
-| ~50,000 files (est.) | **~785.0s build** | **~750.0s build** |
-| Resolution precision | **90.7%** | — |
+| Build speed | **3.2 ms/file** | **16.3 ms/file** |
+| Query time | **29ms** | **44ms** |
+| No-op rebuild | **10ms** | **21ms** |
+| 1-file rebuild | **400ms** | **64ms** |
+| Query: fn-deps | **2.5ms** | **2.2ms** |
+| Query: path | **2.4ms** | **2.2ms** |
+| ~50,000 files (est.) | **~160.0s build** | **~815.0s build** |
+| Resolution precision | **90.3%** | — |
 | Resolution recall | **42.9%** | — |
 
 Metrics are normalized per file for cross-version comparability. Times above are for a full initial build — incremental rebuilds only re-parse changed files.
@@ -638,7 +638,7 @@ Metrics are normalized per file for cross-version comparability. Times above are
 | Language | Precision | Recall | TP | FP | FN | Edges | Dynamic |
 |----------|----------:|-------:|---:|---:|---:|------:|--------:|
 | javascript | 100.0% | 66.7% | 12 | 0 | 6 | 18 | 14/28 |
-| typescript | 100.0% | 75.0% | 15 | 0 | 5 | 20 | — |
+| typescript | 93.8% | 75.0% | 15 | 1 | 5 | 20 | — |
 | bash | 100.0% | 100.0% | 12 | 0 | 0 | 12 | 0/1 |
 | c | 100.0% | 100.0% | 9 | 0 | 0 | 9 | — |
 | clojure | 80.0% | 26.7% | 4 | 1 | 11 | 15 | — |

package/dist/ast-analysis/visitor.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"visitor.d.ts","sourceRoot":"","sources":["../../src/ast-analysis/visitor.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAGH,OAAO,KAAK,EAEV,cAAc,EACd,OAAO,EAEP,WAAW,EACX,WAAW,EACZ,MAAM,aAAa,CAAC;AAqIrB;;;;;;;;;;;GAWG;AACH,wBAAgB,gBAAgB,CAC9B,QAAQ,EAAE,cAAc,EACxB,QAAQ,EAAE,OAAO,EAAE,EACnB,MAAM,EAAE,MAAM,EACd,OAAO,GAAE,WAAgB,GACxB,WAAW,CAgEb"}

package/dist/ast-analysis/visitor.js

@@ -10,6 +10,7 @@
  * The walker maintains shared context (nestingLevel, scopeStack, currentFunction)
  * so individual visitors don't need to track traversal state themselves.
  */
+import { debug } from '../infrastructure/logger.js';
 /** Merge each visitor's custom functionNodeTypes into the master set. */
 function mergeFunctionNodeTypes(visitors, base) {
     const merged = new Set(base);
@@ -82,6 +83,15 @@ function dispatchExitFunction(visitors, skipDepths, node, funcName, context, dep
         }
     }
 }
+/**
+ * Maximum AST depth before walk() bails out.  WASM-backed tree-sitter parsers
+ * have a smaller stack than native V8 (~64-256 KB).  Deep recursion in
+ * generated code, deeply nested object literals, or pathologically large
+ * switch statements can exhaust that stack, causing a V8 fatal error /
+ * segfault (#931).  500 levels is well beyond any realistic hand-written
+ * code while staying safely inside the WASM stack budget.
+ */
+const MAX_WALK_DEPTH = 500;
 /** Collect finish() results from all visitors into a name-keyed map. */
 function collectResults(visitors) {
     const results = {};
@@ -118,6 +128,10 @@ export function walkWithVisitors(rootNode, visitors, langId, options = {}) {
     function walk(node, depth) {
         if (!node)
             return;
+        if (depth > MAX_WALK_DEPTH) {
+            debug(`walkWithVisitors: AST depth limit (${MAX_WALK_DEPTH}) hit — subtree truncated`);
+            return;
+        }
         const type = node.type;
         const isFuncBoundary = allFuncTypes.has(type);
         let funcName = null;

package/dist/ast-analysis/visitor.js.map

@@ -1 +1 @@
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package/dist/cli/commands/watch.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"watch.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/watch.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,aAAa,CAAC;AAErD,eAAO,MAAM,OAAO,EAAE,iBAsBrB,CAAC"}
+{"version":3,"file":"watch.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/watch.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,aAAa,CAAC;AAErD,eAAO,MAAM,OAAO,EAAE,iBAwBrB,CAAC"}

package/dist/cli/commands/watch.js

@@ -4,6 +4,7 @@ export const command = {
     name: 'watch [dir]',
     description: 'Watch project for file changes and incrementally update the graph',
     options: [
+        ['-d, --db <path>', 'Path to graph.db'],
         ['--poll', 'Use stat-based polling (default on Windows to avoid ReFS/Dev Drive crashes)'],
         ['--native', 'Force native OS file watchers instead of polling'],
         ['--poll-interval <ms>', 'Polling interval in milliseconds (default: 2000)'],
@@ -20,6 +21,7 @@ export const command = {
             engine,
             poll,
             pollInterval: opts.pollInterval ? Number(opts.pollInterval) : undefined,
+            dbPath: opts.db ? path.resolve(opts.db) : undefined,
         });
     },
 };

package/dist/cli/commands/watch.js.map

@@ -1 +1 @@
-{"version":3,"file":"watch.js","sourceRoot":"","sources":["../../../src/cli/commands/watch.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,WAAW,CAAC;AAC7B,OAAO,EAAE,YAAY,EAAE,MAAM,+BAA+B,CAAC;AAG7D,MAAM,CAAC,MAAM,OAAO,GAAsB;IACxC,IAAI,EAAE,aAAa;IACnB,WAAW,EAAE,mEAAmE;IAChF,OAAO,EAAE;QACP,CAAC,QAAQ,EAAE,6EAA6E,CAAC;QACzF,CAAC,UAAU,EAAE,kDAAkD,CAAC;QAChE,CAAC,sBAAsB,EAAE,kDAAkD,CAAC;KAC7E;IACD,KAAK,CAAC,OAAO,CAAC,CAAC,GAAG,CAAC,EAAE,IAAI,EAAE,GAAG;QAC5B,MAAM,IAAI,GAAG,IAAI,CAAC,OAAO,CAAC,GAAG,IAAI,GAAG,CAAC,CAAC;QACtC,MAAM,MAAM,GAAG,GAAG,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC,MAAM,CAAC;QACzC,IAAI,IAAI,CAAC,IAAI,IAAI,IAAI,CAAC,MAAM,EAAE,CAAC;YAC7B,GAAG,CAAC,OAAO,CAAC,KAAK,CAAC,4CAA4C,CAAC,CAAC;QAClE,CAAC;QACD,kFAAkF;QAClF,MAAM,IAAI,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,SAAS,CAAC;QAChE,MAAM,YAAY,CAAC,IAAI,EAAE;YACvB,MAAM;YACN,IAAI;YACJ,YAAY,EAAE,IAAI,CAAC,YAAY,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,SAAS;SACxE,CAAC,CAAC;IACL,CAAC;CACF,CAAC"}
+{"version":3,"file":"watch.js","sourceRoot":"","sources":["../../../src/cli/commands/watch.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,WAAW,CAAC;AAC7B,OAAO,EAAE,YAAY,EAAE,MAAM,+BAA+B,CAAC;AAG7D,MAAM,CAAC,MAAM,OAAO,GAAsB;IACxC,IAAI,EAAE,aAAa;IACnB,WAAW,EAAE,mEAAmE;IAChF,OAAO,EAAE;QACP,CAAC,iBAAiB,EAAE,kBAAkB,CAAC;QACvC,CAAC,QAAQ,EAAE,6EAA6E,CAAC;QACzF,CAAC,UAAU,EAAE,kDAAkD,CAAC;QAChE,CAAC,sBAAsB,EAAE,kDAAkD,CAAC;KAC7E;IACD,KAAK,CAAC,OAAO,CAAC,CAAC,GAAG,CAAC,EAAE,IAAI,EAAE,GAAG;QAC5B,MAAM,IAAI,GAAG,IAAI,CAAC,OAAO,CAAC,GAAG,IAAI,GAAG,CAAC,CAAC;QACtC,MAAM,MAAM,GAAG,GAAG,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC,MAAM,CAAC;QACzC,IAAI,IAAI,CAAC,IAAI,IAAI,IAAI,CAAC,MAAM,EAAE,CAAC;YAC7B,GAAG,CAAC,OAAO,CAAC,KAAK,CAAC,4CAA4C,CAAC,CAAC;QAClE,CAAC;QACD,kFAAkF;QAClF,MAAM,IAAI,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,SAAS,CAAC;QAChE,MAAM,YAAY,CAAC,IAAI,EAAE;YACvB,MAAM;YACN,IAAI;YACJ,YAAY,EAAE,IAAI,CAAC,YAAY,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,SAAS;YACvE,MAAM,EAAE,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS;SACpD,CAAC,CAAC;IACL,CAAC;CACF,CAAC"}

package/dist/cli.js

@@ -1,7 +1,29 @@
 #!/usr/bin/env node
 import { run } from './cli/index.js';
+import { disposeParsers } from './domain/parser.js';
 import { CodegraphError, toErrorMessage } from './shared/errors.js';
-run().catch((err) => {
+/**
+ * After the CLI command finishes, tear down any cached WASM parsers and the
+ * worker thread pool. The WASM parse worker (see `domain/wasm-worker-pool.ts`)
+ * keeps the event loop alive until `worker.terminate()` is called, so without
+ * this teardown short-lived commands like `codegraph build` would hang for
+ * minutes before Node gives up — surfacing in CI as `spawnSync ETIMEDOUT`
+ * even though the command's work is already complete.
+ *
+ * `disposeParsers` is safe to call when the pool was never instantiated
+ * (e.g. native engine, or commands that never parse): it no-ops cleanly.
+ */
+async function shutdown() {
+    try {
+        await disposeParsers();
+    }
+    catch {
+        /* don't mask the real exit status over a teardown failure */
+    }
+}
+run()
+    .then(shutdown)
+    .catch(async (err) => {
     if (err instanceof CodegraphError) {
         console.error(`codegraph [${err.code}]: ${err.message}`);
         if (err.file)
@@ -10,6 +32,7 @@ run().catch((err) => {
     else {
         console.error(`codegraph: fatal error — ${toErrorMessage(err)}`);
     }
+    await shutdown();
     process.exit(1);
 });
 //# sourceMappingURL=cli.js.map

package/dist/cli.js.map

@@ -1 +1 @@
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+{"version":3,"file":"cli.js","sourceRoot":"","sources":["../src/cli.ts"],"names":[],"mappings":";AAEA,OAAO,EAAE,GAAG,EAAE,MAAM,gBAAgB,CAAC;AACrC,OAAO,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AACpD,OAAO,EAAE,cAAc,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AAEpE;;;;;;;;;;GAUG;AACH,KAAK,UAAU,QAAQ;IACrB,IAAI,CAAC;QACH,MAAM,cAAc,EAAE,CAAC;IACzB,CAAC;IAAC,MAAM,CAAC;QACP,6DAA6D;IAC/D,CAAC;AACH,CAAC;AAED,GAAG,EAAE;KACF,IAAI,CAAC,QAAQ,CAAC;KACd,KAAK,CAAC,KAAK,EAAE,GAAY,EAAE,EAAE;IAC5B,IAAI,GAAG,YAAY,cAAc,EAAE,CAAC;QAClC,OAAO,CAAC,KAAK,CAAC,cAAc,GAAG,CAAC,IAAI,MAAM,GAAG,CAAC,OAAO,EAAE,CAAC,CAAC;QACzD,IAAI,GAAG,CAAC,IAAI;YAAE,OAAO,CAAC,KAAK,CAAC,WAAW,GAAG,CAAC,IAAI,EAAE,CAAC,CAAC;IACrD,CAAC;SAAM,CAAC;QACN,OAAO,CAAC,KAAK,CAAC,4BAA4B,cAAc,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;IACnE,CAAC;IACD,MAAM,QAAQ,EAAE,CAAC;IACjB,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;AAClB,CAAC,CAAC,CAAC"}

package/dist/domain/graph/builder/context.d.ts

@@ -38,10 +38,27 @@ export declare class PipelineContext {
     barrelOnlyFiles: Set<string>;
     nodesByName: Map<string, NodeRow[]>;
     nodesByNameAndFile: Map<string, NodeRow[]>;
+    /**
+     * Edges from reverse-dep files to changed files, saved before purge so they
+     * can be reconnected to new node IDs after insertNodes (#932, #933).
+     * Eliminates the need to reparse reverse-dep files entirely.
+     */
+    savedReverseDepEdges: Array<{
+        sourceId: number;
+        tgtName: string;
+        tgtKind: string;
+        tgtFile: string;
+        tgtLine: number;
+        edgeKind: string;
+        confidence: number;
+        dynamic: number;
+    }>;
     hasEmbeddings: boolean;
     lineCountMap: Map<string, number>;
     timing: {
         setupMs?: number;
+        collectMs?: number;
+        detectMs?: number;
         parseMs?: number;
         insertMs?: number;
         resolveMs?: number;

package/dist/domain/graph/builder/context.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"context.d.ts","sourceRoot":"","sources":["../../../../src/domain/graph/builder/context.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AACH,OAAO,KAAK,EACV,qBAAqB,EACrB,cAAc,EACd,eAAe,EACf,UAAU,EACV,eAAe,EACf,WAAW,EACX,cAAc,EACd,cAAc,EACd,OAAO,EACP,WAAW,EACX,WAAW,EACZ,MAAM,mBAAmB,CAAC;AAE3B,qBAAa,eAAe;IAE1B,OAAO,EAAG,MAAM,CAAC;IACjB,EAAE,EAAG,qBAAqB,CAAC;IAC3B,MAAM,EAAG,MAAM,CAAC;IAChB,MAAM,EAAG,eAAe,CAAC;IACzB,IAAI,EAAG,cAAc,CAAC;IACtB,UAAU,EAAG,UAAU,CAAC;IACxB,UAAU,EAAG,QAAQ,GAAG,MAAM,CAAC;IAC/B,aAAa,EAAG,MAAM,GAAG,IAAI,CAAC;IAC9B,OAAO,EAAG,WAAW,CAAC;IACtB,WAAW,EAAG,OAAO,CAAC;IACtB,gBAAgB,EAAE,OAAO,CAAS;IAClC,aAAa,EAAG,MAAM,CAAC;IACvB,QAAQ,CAAC,EAAE,cAAc,CAAC;IAC1B,kFAAkF;IAClF,eAAe,EAAE,OAAO,CAAS;IACjC,gGAAgG;IAChG,gBAAgB,EAAE,OAAO,CAAS;IAGlC,QAAQ,EAAG,MAAM,EAAE,CAAC;IACpB,cAAc,EAAG,GAAG,CAAC,MAAM,CAAC,CAAC;IAG7B,WAAW,EAAG,OAAO,CAAC;IACtB,YAAY,EAAG,WAAW,EAAE,CAAC;IAC7B,eAAe,EAAG,cAAc,EAAE,CAAC;IACnC,OAAO,EAAG,MAAM,EAAE,CAAC;IACnB,SAAS,EAAE,OAAO,CAAS;IAG3B,UAAU,EAAG,GAAG,CAAC,MAAM,EAAE,eAAe,CAAC,CAAC;IAC1C,WAAW,EAAG,GAAG,CAAC,MAAM,EAAE,eAAe,CAAC,CAAC;IAC3C,YAAY,EAAG,WAAW,EAAE,CAAC;IAG7B,aAAa,EAAG,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,IAAI,CAAC;IAC3C,WAAW,EAAG,GAAG,CAAC,MAAM,EAAE,OAAO,EAAE,CAAC,CAAC;IACrC,eAAe,EAAG,GAAG,CAAC,MAAM,CAAC,CAAC;IAG9B,WAAW,EAAG,GAAG,CAAC,MAAM,EAAE,OAAO,EAAE,CAAC,CAAC;IACrC,kBAAkB,EAAG,GAAG,CAAC,MAAM,EAAE,OAAO,EAAE,CAAC,CAAC;IAG5C,aAAa,EAAE,OAAO,CAAS;IAC/B,YAAY,EAAG,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAGnC,MAAM,EAAE;QACN,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,SAAS,CAAC,EAAE,MAAM,CAAC;QACnB,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,WAAW,CAAC,EAAE,MAAM,CAAC;QACrB,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,YAAY,CAAC,EAAE,MAAM,CAAC;QACtB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAAC;KACnC,CAAM;IACP,UAAU,EAAG,MAAM,CAAC;CACrB"}
+{"version":3,"file":"context.d.ts","sourceRoot":"","sources":["../../../../src/domain/graph/builder/context.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AACH,OAAO,KAAK,EACV,qBAAqB,EACrB,cAAc,EACd,eAAe,EACf,UAAU,EACV,eAAe,EACf,WAAW,EACX,cAAc,EACd,cAAc,EACd,OAAO,EACP,WAAW,EACX,WAAW,EACZ,MAAM,mBAAmB,CAAC;AAE3B,qBAAa,eAAe;IAE1B,OAAO,EAAG,MAAM,CAAC;IACjB,EAAE,EAAG,qBAAqB,CAAC;IAC3B,MAAM,EAAG,MAAM,CAAC;IAChB,MAAM,EAAG,eAAe,CAAC;IACzB,IAAI,EAAG,cAAc,CAAC;IACtB,UAAU,EAAG,UAAU,CAAC;IACxB,UAAU,EAAG,QAAQ,GAAG,MAAM,CAAC;IAC/B,aAAa,EAAG,MAAM,GAAG,IAAI,CAAC;IAC9B,OAAO,EAAG,WAAW,CAAC;IACtB,WAAW,EAAG,OAAO,CAAC;IACtB,gBAAgB,EAAE,OAAO,CAAS;IAClC,aAAa,EAAG,MAAM,CAAC;IACvB,QAAQ,CAAC,EAAE,cAAc,CAAC;IAC1B,kFAAkF;IAClF,eAAe,EAAE,OAAO,CAAS;IACjC,gGAAgG;IAChG,gBAAgB,EAAE,OAAO,CAAS;IAGlC,QAAQ,EAAG,MAAM,EAAE,CAAC;IACpB,cAAc,EAAG,GAAG,CAAC,MAAM,CAAC,CAAC;IAG7B,WAAW,EAAG,OAAO,CAAC;IACtB,YAAY,EAAG,WAAW,EAAE,CAAC;IAC7B,eAAe,EAAG,cAAc,EAAE,CAAC;IACnC,OAAO,EAAG,MAAM,EAAE,CAAC;IACnB,SAAS,EAAE,OAAO,CAAS;IAG3B,UAAU,EAAG,GAAG,CAAC,MAAM,EAAE,eAAe,CAAC,CAAC;IAC1C,WAAW,EAAG,GAAG,CAAC,MAAM,EAAE,eAAe,CAAC,CAAC;IAC3C,YAAY,EAAG,WAAW,EAAE,CAAC;IAG7B,aAAa,EAAG,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,IAAI,CAAC;IAC3C,WAAW,EAAG,GAAG,CAAC,MAAM,EAAE,OAAO,EAAE,CAAC,CAAC;IACrC,eAAe,EAAG,GAAG,CAAC,MAAM,CAAC,CAAC;IAG9B,WAAW,EAAG,GAAG,CAAC,MAAM,EAAE,OAAO,EAAE,CAAC,CAAC;IACrC,kBAAkB,EAAG,GAAG,CAAC,MAAM,EAAE,OAAO,EAAE,CAAC,CAAC;IAG5C;;;;OAIG;IACH,oBAAoB,EAAE,KAAK,CAAC;QAC1B,QAAQ,EAAE,MAAM,CAAC;QACjB,OAAO,EAAE,MAAM,CAAC;QAChB,OAAO,EAAE,MAAM,CAAC;QAChB,OAAO,EAAE,MAAM,CAAC;QAChB,OAAO,EAAE,MAAM,CAAC;QAChB,QAAQ,EAAE,MAAM,CAAC;QACjB,UAAU,EAAE,MAAM,CAAC;QACnB,OAAO,EAAE,MAAM,CAAC;KACjB,CAAC,CAAM;IAGR,aAAa,EAAE,OAAO,CAAS;IAC/B,YAAY,EAAG,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAGnC,MAAM,EAAE;QACN,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,SAAS,CAAC,EAAE,MAAM,CAAC;QACnB,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,SAAS,CAAC,EAAE,MAAM,CAAC;QACnB,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,WAAW,CAAC,EAAE,MAAM,CAAC;QACrB,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,YAAY,CAAC,EAAE,MAAM,CAAC;QACtB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAAC;KACnC,CAAM;IACP,UAAU,EAAG,MAAM,CAAC;CACrB"}

package/dist/domain/graph/builder/context.js

@@ -37,6 +37,13 @@ export class PipelineContext {
     // ── Node lookup (set by insertNodes / buildEdges stages) ───────────
     nodesByName;
     nodesByNameAndFile;
+    // ── Reverse-dep edge reconnection (set by detectChanges) ───────────
+    /**
+     * Edges from reverse-dep files to changed files, saved before purge so they
+     * can be reconnected to new node IDs after insertNodes (#932, #933).
+     * Eliminates the need to reparse reverse-dep files entirely.
+     */
+    savedReverseDepEdges = [];
     // ── Misc state ─────────────────────────────────────────────────────
     hasEmbeddings = false;
     lineCountMap;

package/dist/domain/graph/builder/context.js.map

@@ -1 +1 @@
-{"version":3,"file":"context.js","sourceRoot":"","sources":["../../../../src/domain/graph/builder/context.ts"],"names":[],"mappings":"AAoBA,MAAM,OAAO,eAAe;IAC1B,sEAAsE;IACtE,OAAO,CAAU;IACjB,EAAE,CAAyB;IAC3B,MAAM,CAAU;IAChB,MAAM,CAAmB;IACzB,IAAI,CAAkB;IACtB,UAAU,CAAc;IACxB,UAAU,CAAqB;IAC/B,aAAa,CAAiB;IAC9B,OAAO,CAAe;IACtB,WAAW,CAAW;IACtB,gBAAgB,GAAY,KAAK,CAAC;IAClC,aAAa,CAAU;IACvB,QAAQ,CAAkB;IAC1B,kFAAkF;IAClF,eAAe,GAAY,KAAK,CAAC;IACjC,gGAAgG;IAChG,gBAAgB,GAAY,KAAK,CAAC;IAElC,sEAAsE;IACtE,QAAQ,CAAY;IACpB,cAAc,CAAe;IAE7B,sEAAsE;IACtE,WAAW,CAAW;IACtB,YAAY,CAAiB;IAC7B,eAAe,CAAoB;IACnC,OAAO,CAAY;IACnB,SAAS,GAAY,KAAK,CAAC;IAE3B,sEAAsE;IACtE,UAAU,CAAgC;IAC1C,WAAW,CAAgC;IAC3C,YAAY,CAAiB;IAE7B,sEAAsE;IACtE,aAAa,CAA8B;IAC3C,WAAW,CAA0B;IACrC,eAAe,CAAe;IAE9B,sEAAsE;IACtE,WAAW,CAA0B;IACrC,kBAAkB,CAA0B;IAE5C,sEAAsE;IACtE,aAAa,GAAY,KAAK,CAAC;IAC/B,YAAY,CAAuB;IAEnC,sEAAsE;IACtE,MAAM,GAcF,EAAE,CAAC;IACP,UAAU,CAAU;CACrB"}
+{"version":3,"file":"context.js","sourceRoot":"","sources":["../../../../src/domain/graph/builder/context.ts"],"names":[],"mappings":"AAoBA,MAAM,OAAO,eAAe;IAC1B,sEAAsE;IACtE,OAAO,CAAU;IACjB,EAAE,CAAyB;IAC3B,MAAM,CAAU;IAChB,MAAM,CAAmB;IACzB,IAAI,CAAkB;IACtB,UAAU,CAAc;IACxB,UAAU,CAAqB;IAC/B,aAAa,CAAiB;IAC9B,OAAO,CAAe;IACtB,WAAW,CAAW;IACtB,gBAAgB,GAAY,KAAK,CAAC;IAClC,aAAa,CAAU;IACvB,QAAQ,CAAkB;IAC1B,kFAAkF;IAClF,eAAe,GAAY,KAAK,CAAC;IACjC,gGAAgG;IAChG,gBAAgB,GAAY,KAAK,CAAC;IAElC,sEAAsE;IACtE,QAAQ,CAAY;IACpB,cAAc,CAAe;IAE7B,sEAAsE;IACtE,WAAW,CAAW;IACtB,YAAY,CAAiB;IAC7B,eAAe,CAAoB;IACnC,OAAO,CAAY;IACnB,SAAS,GAAY,KAAK,CAAC;IAE3B,sEAAsE;IACtE,UAAU,CAAgC;IAC1C,WAAW,CAAgC;IAC3C,YAAY,CAAiB;IAE7B,sEAAsE;IACtE,aAAa,CAA8B;IAC3C,WAAW,CAA0B;IACrC,eAAe,CAAe;IAE9B,sEAAsE;IACtE,WAAW,CAA0B;IACrC,kBAAkB,CAA0B;IAE5C,sEAAsE;IACtE;;;;OAIG;IACH,oBAAoB,GASf,EAAE,CAAC;IAER,sEAAsE;IACtE,aAAa,GAAY,KAAK,CAAC;IAC/B,YAAY,CAAuB;IAEnC,sEAAsE;IACtE,MAAM,GAgBF,EAAE,CAAC;IACP,UAAU,CAAU;CACrB"}

package/dist/domain/graph/builder/helpers.d.ts

@@ -1,14 +1,25 @@
 import type { BetterSqlite3Database, CodegraphConfig, PathAliases } from '../../../types.js';
 export declare const BUILTIN_RECEIVERS: Set<string>;
+/**
+ * Check whether a source file passes the configured include/exclude globs.
+ *
+ * Patterns are matched against the path relative to the project root,
+ * normalized to forward slashes (e.g. `src/foo/bar.ts`). When both lists
+ * are set, a file must match at least one include and no exclude.
+ */
+export declare function passesIncludeExclude(relPath: string, includeRegexes: readonly RegExp[], excludeRegexes: readonly RegExp[]): boolean;
 /**
  * Recursively collect all source files under `dir`.
  * When `directories` is a Set, also tracks which directories contain files.
+ *
+ * The first invocation establishes `dir` as the project root against which
+ * `config.include` / `config.exclude` globs are matched.
  */
-export declare function collectFiles(dir: string, files: string[], config: Partial<CodegraphConfig>, directories: Set<string>, _visited?: Set<string>): {
+export declare function collectFiles(dir: string, files: string[], config: Partial<CodegraphConfig>, directories: Set<string>, _visited?: Set<string>, _rootDir?: string, _includeRegexes?: readonly RegExp[], _excludeRegexes?: readonly RegExp[]): {
     files: string[];
     directories: Set<string>;
 };
-export declare function collectFiles(dir: string, files?: string[], config?: Partial<CodegraphConfig>, directories?: null, _visited?: Set<string>): string[];
+export declare function collectFiles(dir: string, files?: string[], config?: Partial<CodegraphConfig>, directories?: null, _visited?: Set<string>, _rootDir?: string, _includeRegexes?: readonly RegExp[], _excludeRegexes?: readonly RegExp[]): string[];
 /**
  * Load path aliases from tsconfig.json / jsconfig.json.
  */

package/dist/domain/graph/builder/helpers.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"helpers.d.ts","sourceRoot":"","sources":["../../../../src/domain/graph/builder/helpers.ts"],"names":[],"mappings":"AAYA,OAAO,KAAK,EACV,qBAAqB,EACrB,eAAe,EACf,WAAW,EAEZ,MAAM,mBAAmB,CAAC;AAE3B,eAAO,MAAM,iBAAiB,EAAE,GAAG,CAAC,MAAM,CA6BxC,CAAC;AAaH;;;;;;GAMG;AACH,wBAAgB,oBAAoB,CAClC,OAAO,EAAE,MAAM,EACf,cAAc,EAAE,SAAS,MAAM,EAAE,EACjC,cAAc,EAAE,SAAS,MAAM,EAAE,GAChC,OAAO,CAIT;AAED;;;;;;GAMG;AACH,wBAAgB,YAAY,CAC1B,GAAG,EAAE,MAAM,EACX,KAAK,EAAE,MAAM,EAAE,EACf,MAAM,EAAE,OAAO,CAAC,eAAe,CAAC,EAChC,WAAW,EAAE,GAAG,CAAC,MAAM,CAAC,EACxB,QAAQ,CAAC,EAAE,GAAG,CAAC,MAAM,CAAC,EACtB,QAAQ,CAAC,EAAE,MAAM,EACjB,eAAe,CAAC,EAAE,SAAS,MAAM,EAAE,EACnC,eAAe,CAAC,EAAE,SAAS,MAAM,EAAE,GAClC;IAAE,KAAK,EAAE,MAAM,EAAE,CAAC;IAAC,WAAW,EAAE,GAAG,CAAC,MAAM,CAAC,CAAA;CAAE,CAAC;AACjD,wBAAgB,YAAY,CAC1B,GAAG,EAAE,MAAM,EACX,KAAK,CAAC,EAAE,MAAM,EAAE,EAChB,MAAM,CAAC,EAAE,OAAO,CAAC,eAAe,CAAC,EACjC,WAAW,CAAC,EAAE,IAAI,EAClB,QAAQ,CAAC,EAAE,GAAG,CAAC,MAAM,CAAC,EACtB,QAAQ,CAAC,EAAE,MAAM,EACjB,eAAe,CAAC,EAAE,SAAS,MAAM,EAAE,EACnC,eAAe,CAAC,EAAE,SAAS,MAAM,EAAE,GAClC,MAAM,EAAE,CAAC;AA+EZ;;GAEG;AACH,wBAAgB,eAAe,CAAC,OAAO,EAAE,MAAM,GAAG,WAAW,CA4B5D;AAED;;GAEG;AACH,wBAAgB,QAAQ,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CAEhD;AAED;;GAEG;AACH,wBAAgB,QAAQ,CAAC,QAAQ,EAAE,MAAM,GAAG;IAAE,OAAO,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAA;CAAE,GAAG,IAAI,CAOnF;AAQD,wBAAgB,YAAY,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,GAAE,MAAU,GAAG,MAAM,CAa1E;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CACjC,EAAE,EAAE,qBAAqB,EACzB,KAAK,EAAE,MAAM,EAAE,EACf,OAAO,GAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAM,GACpC,IAAI,CAGN;AA6CD;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,EAAE,EAAE,qBAAqB,EAAE,IAAI,EAAE,OAAO,EAAE,EAAE,GAAG,IAAI,CAanF;AAED;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,EAAE,EAAE,qBAAqB,EAAE,IAAI,EAAE,OAAO,EAAE,EAAE,GAAG,IAAI,CAanF"}

package/dist/domain/graph/builder/helpers.js

@@ -8,7 +8,8 @@ import fs from 'node:fs';
 import path from 'node:path';
 import { purgeFilesData } from '../../../db/index.js';
 import { warn } from '../../../infrastructure/logger.js';
-import { EXTENSIONS, IGNORE_DIRS } from '../../../shared/constants.js';
+import { EXTENSIONS, IGNORE_DIRS, normalizePath } from '../../../shared/constants.js';
+import { compileGlobs, matchesAny } from '../../../shared/globs.js';
 export const BUILTIN_RECEIVERS = new Set([
     'console',
     'Math',
@@ -53,9 +54,29 @@ function shouldSkipEntry(entry, extraIgnore) {
         return true;
     return false;
 }
-export function collectFiles(dir, files = [], config = {}, directories = null, _visited = new Set()) {
+/**
+ * Check whether a source file passes the configured include/exclude globs.
+ *
+ * Patterns are matched against the path relative to the project root,
+ * normalized to forward slashes (e.g. `src/foo/bar.ts`). When both lists
+ * are set, a file must match at least one include and no exclude.
+ */
+export function passesIncludeExclude(relPath, includeRegexes, excludeRegexes) {
+    if (includeRegexes.length > 0 && !matchesAny(includeRegexes, relPath))
+        return false;
+    if (excludeRegexes.length > 0 && matchesAny(excludeRegexes, relPath))
+        return false;
+    return true;
+}
+export function collectFiles(dir, files = [], config = {}, directories = null, _visited = new Set(), _rootDir, _includeRegexes, _excludeRegexes) {
     const trackDirs = directories instanceof Set;
     let hasFiles = false;
+    // First call: compute root and compile include/exclude patterns once,
+    // then pass them down recursive calls so we don't recompile per directory.
+    const rootDir = _rootDir ?? dir;
+    const includeRegexes = _includeRegexes ?? compileGlobs(config.include);
+    const excludeRegexes = _excludeRegexes ?? compileGlobs(config.exclude);
+    const hasGlobFilters = includeRegexes.length > 0 || excludeRegexes.length > 0;
     // Merge config ignoreDirs with defaults
     const extraIgnore = config.ignoreDirs ? new Set(config.ignoreDirs) : null;
     // Detect symlink loops (before I/O to avoid wasted readdirSync)
@@ -85,13 +106,18 @@ export function collectFiles(dir, files = [], config = {}, directories = null, _
         const full = path.join(dir, entry.name);
         if (entry.isDirectory()) {
             if (trackDirs) {
-                collectFiles(full, files, config, directories, _visited);
+                collectFiles(full, files, config, directories, _visited, rootDir, includeRegexes, excludeRegexes);
             }
             else {
-                collectFiles(full, files, config, null, _visited);
+                collectFiles(full, files, config, null, _visited, rootDir, includeRegexes, excludeRegexes);
             }
         }
         else if (EXTENSIONS.has(path.extname(entry.name))) {
+            if (hasGlobFilters) {
+                const rel = normalizePath(path.relative(rootDir, full));
+                if (!passesIncludeExclude(rel, includeRegexes, excludeRegexes))
+                    continue;
+            }
             files.push(full);
             hasFiles = true;
         }

package/dist/domain/graph/builder/helpers.js.map

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package/dist/domain/graph/builder/pipeline.d.ts.map

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