@optave/codegraph 3.9.1 → 3.9.2

package/dist/domain/analysis/fn-impact.js

@@ -1,6 +1,6 @@
 import { Repository, SqliteRepository } from '../../db/index.js';
 import { isTestFile } from '../../infrastructure/test-filter.js';
-import { normalizeSymbol } from '../../shared/normalize.js';
+import { normalizeSymbol, toSymbolRef } from '../../shared/normalize.js';
 import { paginateResult } from '../../shared/paginate.js';
 import { resolveAnalysisOpts, withRepo } from './query-helpers.js';
 import { findMatchingNodes } from './symbol-lookup.js';
@@ -72,7 +72,7 @@ export function bfsTransitiveCallers(dbOrRepo, startId, { noTests = false, maxDe
                     nextFrontier.push(c.id);
                     if (!levels[d])
                         levels[d] = [];
-                    levels[d].push({ name: c.name, kind: c.kind, file: c.file, line: c.line });
+                    levels[d].push(toSymbolRef(c));
                     if (onVisit)
                         onVisit(c, fid, d);
                 }

package/dist/domain/analysis/fn-impact.js.map

@@ -1 +1 @@
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+{"version":3,"file":"fn-impact.js","sourceRoot":"","sources":["../../../src/domain/analysis/fn-impact.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,gBAAgB,EAAE,MAAM,mBAAmB,CAAC;AACjE,OAAO,EAAE,UAAU,EAAE,MAAM,qCAAqC,CAAC;AACjE,OAAO,EAAE,eAAe,EAAE,WAAW,EAAE,MAAM,2BAA2B,CAAC;AACzE,OAAO,EAAE,cAAc,EAAE,MAAM,0BAA0B,CAAC;AAE1D,OAAO,EAAE,mBAAmB,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AACnE,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAC;AAEvD,2GAA2G;AAC3G,MAAM,SAAS,GAAG,IAAI,OAAO,EAAgE,CAAC;AAE9F,uEAAuE;AACvE,SAAS,MAAM,CACb,QAAiE;IAEjE,IAAI,QAAQ,YAAY,UAAU;QAAE,OAAO,QAAQ,CAAC;IACpD,MAAM,EAAE,GAAG,QAAiC,CAAC;IAC7C,IAAI,IAAI,GAAG,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;IAC7B,IAAI,CAAC,IAAI,EAAE,CAAC;QACV,IAAI,GAAG,IAAI,gBAAgB,CAAC,EAAE,CAAC,CAAC;QAChC,SAAS,CAAC,GAAG,CAAC,EAAE,EAAE,IAAI,CAAC,CAAC;IAC1B,CAAC;IACD,OAAO,IAAI,CAAC;AACd,CAAC;AAED,yCAAyC;AAEzC,MAAM,oBAAoB,GAAG,IAAI,GAAG,CAAC,CAAC,WAAW,EAAE,OAAO,CAAC,CAAC,CAAC;AAgB7D,oFAAoF;AACpF,SAAS,iBAAiB,CACxB,IAAoB,EACpB,QAAgB,EAChB,KAAa,EACb,OAAoB,EACpB,QAAkB,EAClB,MAAiB,EACjB,OAAgB,EAChB,OAAoB;IAEpB,IAAI,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,OAAO,IAAI,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAAE,OAAO;IACvE,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACrB,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACvB,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC;QAAE,MAAM,CAAC,KAAK,CAAC,GAAG,EAAE,CAAC;IACvC,MAAM,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC;QACjB,IAAI,EAAE,IAAI,CAAC,IAAI;QACf,IAAI,EAAE,IAAI,CAAC,IAAI;QACf,IAAI,EAAE,IAAI,CAAC,IAAI;QACf,IAAI,EAAE,IAAI,CAAC,IAAI;QACf,aAAa,EAAE,IAAI;KACpB,CAAC,CAAC;IACH,IAAI,OAAO;QAAE,OAAO,CAAC,EAAE,GAAG,IAAI,EAAE,aAAa,EAAE,IAAI,EAAE,EAAE,QAAQ,EAAE,KAAK,CAAC,CAAC;AAC1E,CAAC;AAED,6EAA6E;AAC7E,SAAS,kBAAkB,CACzB,IAAqC,EACrC,MAAc,EACd,KAAa,EACb,OAAoB,EACpB,QAAkB,EAClB,MAAiB,EACjB,OAAgB,EAChB,OAAoB;IAEpB,MAAM,KAAK,GAAG,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAqB,CAAC;IAChE,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,iBAAiB,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,CAAC,CAAC;IACtF,CAAC;AACH,CAAC;AAED,MAAM,UAAU,oBAAoB,CAClC,QAAiE,EACjE,OAAe,EACf,EACE,OAAO,GAAG,KAAK,EACf,QAAQ,GAAG,CAAC,EACZ,mBAAmB,GAAG,IAAI,EAC1B,OAAO,MAML,EAAE;IAEN,MAAM,IAAI,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC;IAC9B,MAAM,mBAAmB,GAAG,mBAAmB,IAAI,IAAI,CAAC,kBAAkB,EAAE,CAAC;IAC7E,MAAM,OAAO,GAAG,IAAI,GAAG,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC;IACnC,MAAM,MAAM,GAAc,EAAE,CAAC;IAC7B,IAAI,QAAQ,GAAG,CAAC,OAAO,CAAC,CAAC;IAEzB,iFAAiF;IACjF,MAAM,gBAAgB,GAAa,EAAE,CAAC;IACtC,IAAI,mBAAmB,EAAE,CAAC;QACxB,MAAM,SAAS,GAAG,IAAI,CAAC,YAAY,CAAC,OAAO,CAAwB,CAAC;QACpE,IAAI,SAAS,IAAI,oBAAoB,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,EAAE,CAAC;YAC1D,kBAAkB,CAAC,IAAI,EAAE,OAAO,EAAE,CAAC,EAAE,OAAO,EAAE,gBAAgB,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,CAAC,CAAC;QAC5F,CAAC;IACH,CAAC;IAED,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,QAAQ,EAAE,CAAC,EAAE,EAAE,CAAC;QACnC,IAAI,CAAC,KAAK,CAAC,IAAI,gBAAgB,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC3C,QAAQ,GAAG,CAAC,GAAG,QAAQ,EAAE,GAAG,gBAAgB,CAAC,CAAC;QAChD,CAAC;QACD,MAAM,YAAY,GAAa,EAAE,CAAC;QAClC,KAAK,MAAM,GAAG,IAAI,QAAQ,EAAE,CAAC;YAC3B,MAAM,OAAO,GAAG,IAAI,CAAC,mBAAmB,CAAC,GAAG,CAAqB,CAAC;YAClE,KAAK,MAAM,CAAC,IAAI,OAAO,EAAE,CAAC;gBACxB,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,OAAO,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,EAAE,CAAC;oBAC5D,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;oBAClB,YAAY,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;oBACxB,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC;wBAAE,MAAM,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC;oBAC/B,MAAM,CAAC,CAAC,CAAE,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,CAAC;oBAChC,IAAI,OAAO;wBAAE,OAAO,CAAC,CAAC,EAAE,GAAG,EAAE,CAAC,CAAC,CAAC;gBAClC,CAAC;gBACD,IAAI,mBAAmB,IAAI,oBAAoB,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC;oBAC5D,kBAAkB,CAAC,IAAI,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,GAAG,CAAC,EAAE,OAAO,EAAE,YAAY,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,CAAC,CAAC;gBACzF,CAAC;YACH,CAAC;QACH,CAAC;QACD,QAAQ,GAAG,YAAY,CAAC;QACxB,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;YAAE,MAAM;IACnC,CAAC;IAED,OAAO,EAAE,eAAe,EAAE,OAAO,CAAC,IAAI,GAAG,CAAC,EAAE,MAAM,EAAE,CAAC;AACvD,CAAC;AAED,MAAM,UAAU,kBAAkB,CAChC,IAAY,EACZ,YAAoB,EACpB,OAA8B,EAAE;IAEhC,OAAO,QAAQ,CAAC,YAAY,EAAE,CAAC,IAAI,EAAE,EAAE;QACrC,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,IAAI,KAAK,CAAC;QACtC,MAAM,SAAS,GAAG,IAAI,CAAC,aAAa,CAAC,IAAI,IAAI,GAAG,CAAc,CAAC;QAC/D,IAAI,SAAS,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC3B,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,EAAE,EAAE,MAAM,EAAE,EAAE,EAAE,eAAe,EAAE,CAAC,EAAE,CAAC;QAC/D,CAAC;QAED,MAAM,OAAO,GAAG,IAAI,GAAG,EAAU,CAAC;QAClC,MAAM,KAAK,GAAa,EAAE,CAAC;QAC3B,MAAM,MAAM,GAAG,IAAI,GAAG,EAAkB,CAAC;QAEzC,KAAK,MAAM,EAAE,IAAI,SAAS,EAAE,CAAC;YAC3B,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;YACnB,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;YAClB,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;QACvB,CAAC;QAED,OAAO,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YACxB,MAAM,OAAO,GAAG,KAAK,CAAC,KAAK,EAAG,CAAC;YAC/B,MAAM,KAAK,GAAG,MAAM,CAAC,GAAG,CAAC,OAAO,CAAE,CAAC;YACnC,MAAM,UAAU,GAAG,IAAI,CAAC,oBAAoB,CAAC,OAAO,CAAqB,CAAC;YAC1E,KAAK,MAAM,GAAG,IAAI,UAAU,EAAE,CAAC;gBAC7B,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,OAAO,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,IAAI,CAAC,CA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package/dist/domain/analysis/implementations.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"implementations.d.ts","sourceRoot":"","sources":["../../../src/domain/analysis/implementations.ts"],"names":[],"mappings":"AAQA;;GAEG;AACH,wBAAgB,mBAAmB,CACjC,IAAI,EAAE,MAAM,EACZ,YAAY,EAAE,MAAM,EACpB,IAAI,GAAE;IAAE,OAAO,CAAC,EAAE,OAAO,CAAC;IAAC,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,MAAM,CAAA;CAAO;;;;;;;;;;;;;;;;;;;EAkChG;AAED;;GAEG;AACH,wBAAgB,cAAc,CAC5B,IAAI,EAAE,MAAM,EACZ,YAAY,EAAE,MAAM,EACpB,IAAI,GAAE;IAAE,OAAO,CAAC,EAAE,OAAO,CAAC;IAAC,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,MAAM,CAAA;CAAO;;;;;;;;;;;;;;;;;;;EAkChG"}
+{"version":3,"file":"implementations.d.ts","sourceRoot":"","sources":["../../../src/domain/analysis/implementations.ts"],"names":[],"mappings":"AAQA;;GAEG;AACH,wBAAgB,mBAAmB,CACjC,IAAI,EAAE,MAAM,EACZ,YAAY,EAAE,MAAM,EACpB,IAAI,GAAE;IAAE,OAAO,CAAC,EAAE,OAAO,CAAC;IAAC,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,MAAM,CAAA;CAAO;;;;;;;;;;;;;;;;;;;EA6BhG;AAED;;GAEG;AACH,wBAAgB,cAAc,CAC5B,IAAI,EAAE,MAAM,EACZ,YAAY,EAAE,MAAM,EACpB,IAAI,GAAE;IAAE,OAAO,CAAC,EAAE,OAAO,CAAC;IAAC,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,MAAM,CAAA;CAAO;;;;;;;;;;;;;;;;;;;EA6BhG"}

package/dist/domain/analysis/implementations.js

@@ -1,6 +1,6 @@
 import { isTestFile } from '../../infrastructure/test-filter.js';
 import { CORE_SYMBOL_KINDS } from '../../shared/kinds.js';
-import { normalizeSymbol } from '../../shared/normalize.js';
+import { normalizeSymbol, toSymbolRef } from '../../shared/normalize.js';
 import { paginateResult } from '../../shared/paginate.js';
 import { withRepo } from './query-helpers.js';
 import { findMatchingNodes } from './symbol-lookup.js';
@@ -26,12 +26,7 @@ export function implementationsData(name, customDbPath, opts = {}) {
                 implementors = implementors.filter((n) => !isTestFile(n.file));
             return {
                 ...normalizeSymbol(node, repo, hc),
-                implementors: implementors.map((impl) => ({
-                    name: impl.name,
-                    kind: impl.kind,
-                    file: impl.file,
-                    line: impl.line,
-                })),
+                implementors: implementors.map(toSymbolRef),
             };
         });
         const base = { name, results };
@@ -60,12 +55,7 @@ export function interfacesData(name, customDbPath, opts = {}) {
                 interfaces = interfaces.filter((n) => !isTestFile(n.file));
             return {
                 ...normalizeSymbol(node, repo, hc),
-                interfaces: interfaces.map((iface) => ({
-                    name: iface.name,
-                    kind: iface.kind,
-                    file: iface.file,
-                    line: iface.line,
-                })),
+                interfaces: interfaces.map(toSymbolRef),
             };
         });
         const base = { name, results };

package/dist/domain/analysis/implementations.js.map

@@ -1 +1 @@
-{"version":3,"file":"implementations.js","sourceRoot":"","sources":["../../../src/domain/analysis/implementations.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,qCAAqC,CAAC;AACjE,OAAO,EAAE,iBAAiB,EAAE,MAAM,uBAAuB,CAAC;AAC1D,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAC;AAC5D,OAAO,EAAE,cAAc,EAAE,MAAM,0BAA0B,CAAC;AAE1D,OAAO,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAC9C,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAC;AAEvD;;GAEG;AACH,MAAM,UAAU,mBAAmB,CACjC,IAAY,EACZ,YAAoB,EACpB,OAA6F,EAAE;IAE/F,OAAO,QAAQ,CAAC,YAAY,EAAE,CAAC,IAAI,EAAE,EAAE;QACrC,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,IAAI,KAAK,CAAC;QACtC,MAAM,EAAE,GAAG,IAAI,GAAG,EAAE,CAAC;QAErB,MAAM,KAAK,GAAG,iBAAiB,CAAC,IAAI,EAAE,IAAI,EAAE;YAC1C,OAAO;YACP,IAAI,EAAE,IAAI,CAAC,IAAI;YACf,IAAI,EAAE,IAAI,CAAC,IAAI;YACf,KAAK,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,iBAAiB;SACjD,CAAC,CAAC;QACH,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACvB,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,EAAE,EAAE,CAAC;QAC/B,CAAC;QAED,MAAM,OAAO,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE;YACjC,IAAI,YAAY,GAAG,IAAI,CAAC,gBAAgB,CAAC,IAAI,CAAC,EAAE,CAAqB,CAAC;YACtE,IAAI,OAAO;gBAAE,YAAY,GAAG,YAAY,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;YAE5E,OAAO;gBACL,GAAG,eAAe,CAAC,IAAI,EAAE,IAAI,EAAE,EAAE,CAAC;gBAClC,YAAY,EAAE,YAAY,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;oBACxC,IAAI,EAAE,IAAI,CAAC,IAAI;oBACf,IAAI,EAAE,IAAI,CAAC,IAAI;oBACf,IAAI,EAAE,IAAI,CAAC,IAAI;oBACf,IAAI,EAAE,IAAI,CAAC,IAAI;iBAChB,CAAC,CAAC;aACJ,CAAC;QACJ,CAAC,CAAC,CAAC;QAEH,MAAM,IAAI,GAAG,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC;QAC/B,OAAO,cAAc,CAAC,IAAI,EAAE,SAAS,EAAE,EAAE,KAAK,EAAE,IAAI,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC;IACrF,CAAC,CAAC,CAAC;AACL,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,cAAc,CAC5B,IAAY,EACZ,YAAoB,EACpB,OAA6F,EAAE;IAE/F,OAAO,QAAQ,CAAC,YAAY,EAAE,CAAC,IAAI,EAAE,EAAE;QACrC,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,IAAI,KAAK,CAAC;QACtC,MAAM,EAAE,GAAG,IAAI,GAAG,EAAE,CAAC;QAErB,MAAM,KAAK,GAAG,iBAAiB,CAAC,IAAI,EAAE,IAAI,EAAE;YAC1C,OAAO;YACP,IAAI,EAAE,IAAI,CAAC,IAAI;YACf,IAAI,EAAE,IAAI,CAAC,IAAI;YACf,KAAK,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,iBAAiB;SACjD,CAAC,CAAC;QACH,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACvB,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,EAAE,EAAE,CAAC;QAC/B,CAAC;QAED,MAAM,OAAO,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE;YACjC,IAAI,UAAU,GAAG,IAAI,CAAC,cAAc,CAAC,IAAI,CAAC,EAAE,CAAqB,CAAC;YAClE,IAAI,OAAO;gBAAE,UAAU,GAAG,UAAU,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;YAExE,OAAO;gBACL,GAAG,eAAe,CAAC,IAAI,EAAE,IAAI,EAAE,EAAE,CAAC;gBAClC,UAAU,EAAE,UAAU,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC;oBACrC,IAAI,EAAE,KAAK,CAAC,IAAI;oBAChB,IAAI,EAAE,KAAK,CAAC,IAAI;oBAChB,IAAI,EAAE,KAAK,CAAC,IAAI;oBAChB,IAAI,EAAE,KAAK,CAAC,IAAI;iBACjB,CAAC,CAAC;aACJ,CAAC;QACJ,CAAC,CAAC,CAAC;QAEH,MAAM,IAAI,GAAG,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC;QAC/B,OAAO,cAAc,CAAC,IAAI,EAAE,SAAS,EAAE,EAAE,KAAK,EAAE,IAAI,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC;IACrF,CAAC,CAAC,CAAC;AACL,CAAC"}
+{"version":3,"file":"implementations.js","sourceRoot":"","sources":["../../../src/domain/analysis/implementations.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,qCAAqC,CAAC;AACjE,OAAO,EAAE,iBAAiB,EAAE,MAAM,uBAAuB,CAAC;AAC1D,OAAO,EAAE,eAAe,EAAE,WAAW,EAAE,MAAM,2BAA2B,CAAC;AACzE,OAAO,EAAE,cAAc,EAAE,MAAM,0BAA0B,CAAC;AAE1D,OAAO,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAC9C,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAC;AAEvD;;GAEG;AACH,MAAM,UAAU,mBAAmB,CACjC,IAAY,EACZ,YAAoB,EACpB,OAA6F,EAAE;IAE/F,OAAO,QAAQ,CAAC,YAAY,EAAE,CAAC,IAAI,EAAE,EAAE;QACrC,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,IAAI,KAAK,CAAC;QACtC,MAAM,EAAE,GAAG,IAAI,GAAG,EAAE,CAAC;QAErB,MAAM,KAAK,GAAG,iBAAiB,CAAC,IAAI,EAAE,IAAI,EAAE;YAC1C,OAAO;YACP,IAAI,EAAE,IAAI,CAAC,IAAI;YACf,IAAI,EAAE,IAAI,CAAC,IAAI;YACf,KAAK,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,iBAAiB;SACjD,CAAC,CAAC;QACH,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACvB,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,EAAE,EAAE,CAAC;QAC/B,CAAC;QAED,MAAM,OAAO,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE;YACjC,IAAI,YAAY,GAAG,IAAI,CAAC,gBAAgB,CAAC,IAAI,CAAC,EAAE,CAAqB,CAAC;YACtE,IAAI,OAAO;gBAAE,YAAY,GAAG,YAAY,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;YAE5E,OAAO;gBACL,GAAG,eAAe,CAAC,IAAI,EAAE,IAAI,EAAE,EAAE,CAAC;gBAClC,YAAY,EAAE,YAAY,CAAC,GAAG,CAAC,WAAW,CAAC;aAC5C,CAAC;QACJ,CAAC,CAAC,CAAC;QAEH,MAAM,IAAI,GAAG,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC;QAC/B,OAAO,cAAc,CAAC,IAAI,EAAE,SAAS,EAAE,EAAE,KAAK,EAAE,IAAI,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC;IACrF,CAAC,CAAC,CAAC;AACL,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,cAAc,CAC5B,IAAY,EACZ,YAAoB,EACpB,OAA6F,EAAE;IAE/F,OAAO,QAAQ,CAAC,YAAY,EAAE,CAAC,IAAI,EAAE,EAAE;QACrC,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,IAAI,KAAK,CAAC;QACtC,MAAM,EAAE,GAAG,IAAI,GAAG,EAAE,CAAC;QAErB,MAAM,KAAK,GAAG,iBAAiB,CAAC,IAAI,EAAE,IAAI,EAAE;YAC1C,OAAO;YACP,IAAI,EAAE,IAAI,CAAC,IAAI;YACf,IAAI,EAAE,IAAI,CAAC,IAAI;YACf,KAAK,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,iBAAiB;SACjD,CAAC,CAAC;QACH,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACvB,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,EAAE,EAAE,CAAC;QAC/B,CAAC;QAED,MAAM,OAAO,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE;YACjC,IAAI,UAAU,GAAG,IAAI,CAAC,cAAc,CAAC,IAAI,CAAC,EAAE,CAAqB,CAAC;YAClE,IAAI,OAAO;gBAAE,UAAU,GAAG,UAAU,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;YAExE,OAAO;gBACL,GAAG,eAAe,CAAC,IAAI,EAAE,IAAI,EAAE,EAAE,CAAC;gBAClC,UAAU,EAAE,UAAU,CAAC,GAAG,CAAC,WAAW,CAAC;aACxC,CAAC;QACJ,CAAC,CAAC,CAAC;QAEH,MAAM,IAAI,GAAG,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC;QAC/B,OAAO,cAAc,CAAC,IAAI,EAAE,SAAS,EAAE,EAAE,KAAK,EAAE,IAAI,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC;IACrF,CAAC,CAAC,CAAC;AACL,CAAC"}

package/dist/domain/graph/builder/context.d.ts

@@ -19,6 +19,10 @@ export declare class PipelineContext {
     forceFullRebuild: boolean;
     schemaVersion: number;
     nativeDb?: NativeDatabase;
+    /** Whether native engine is available (deferred — DB opened only when needed). */
+    nativeAvailable: boolean;
+    /** True when ctx.db is a NativeDbProxy — single rusqlite connection for the entire pipeline. */
+    nativeFirstProxy: boolean;
     allFiles: string[];
     discoveredDirs: Set<string>;
     isFullBuild: boolean;

package/dist/domain/graph/builder/context.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"context.d.ts","sourceRoot":"","sources":["../../../../src/domain/graph/builder/context.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AACH,OAAO,KAAK,EACV,qBAAqB,EACrB,cAAc,EACd,eAAe,EACf,UAAU,EACV,eAAe,EACf,WAAW,EACX,cAAc,EACd,cAAc,EACd,OAAO,EACP,WAAW,EACX,WAAW,EACZ,MAAM,mBAAmB,CAAC;AAE3B,qBAAa,eAAe;IAE1B,OAAO,EAAG,MAAM,CAAC;IACjB,EAAE,EAAG,qBAAqB,CAAC;IAC3B,MAAM,EAAG,MAAM,CAAC;IAChB,MAAM,EAAG,eAAe,CAAC;IACzB,IAAI,EAAG,cAAc,CAAC;IACtB,UAAU,EAAG,UAAU,CAAC;IACxB,UAAU,EAAG,QAAQ,GAAG,MAAM,CAAC;IAC/B,aAAa,EAAG,MAAM,GAAG,IAAI,CAAC;IAC9B,OAAO,EAAG,WAAW,CAAC;IACtB,WAAW,EAAG,OAAO,CAAC;IACtB,gBAAgB,EAAE,OAAO,CAAS;IAClC,aAAa,EAAG,MAAM,CAAC;IACvB,QAAQ,CAAC,EAAE,cAAc,CAAC;IAC1B,kFAAkF;IAClF,eAAe,EAAE,OAAO,CAAS;IACjC,gGAAgG;IAChG,gBAAgB,EAAE,OAAO,CAAS;IAGlC,QAAQ,EAAG,MAAM,EAAE,CAAC;IACpB,cAAc,EAAG,GAAG,CAAC,MAAM,CAAC,CAAC;IAG7B,WAAW,EAAG,OAAO,CAAC;IACtB,YAAY,EAAG,WAAW,EAAE,CAAC;IAC7B,eAAe,EAAG,cAAc,EAAE,CAAC;IACnC,OAAO,EAAG,MAAM,EAAE,CAAC;IACnB,SAAS,EAAE,OAAO,CAAS;IAG3B,UAAU,EAAG,GAAG,CAAC,MAAM,EAAE,eAAe,CAAC,CAAC;IAC1C,WAAW,EAAG,GAAG,CAAC,MAAM,EAAE,eAAe,CAAC,CAAC;IAC3C,YAAY,EAAG,WAAW,EAAE,CAAC;IAG7B,aAAa,EAAG,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,IAAI,CAAC;IAC3C,WAAW,EAAG,GAAG,CAAC,MAAM,EAAE,OAAO,EAAE,CAAC,CAAC;IACrC,eAAe,EAAG,GAAG,CAAC,MAAM,CAAC,CAAC;IAG9B,WAAW,EAAG,GAAG,CAAC,MAAM,EAAE,OAAO,EAAE,CAAC,CAAC;IACrC,kBAAkB,EAAG,GAAG,CAAC,MAAM,EAAE,OAAO,EAAE,CAAC,CAAC;IAG5C,aAAa,EAAE,OAAO,CAAS;IAC/B,YAAY,EAAG,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAGnC,MAAM,EAAE;QACN,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,SAAS,CAAC,EAAE,MAAM,CAAC;QACnB,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,WAAW,CAAC,EAAE,MAAM,CAAC;QACrB,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,YAAY,CAAC,EAAE,MAAM,CAAC;QACtB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAAC;KACnC,CAAM;IACP,UAAU,EAAG,MAAM,CAAC;CACrB"}

package/dist/domain/graph/builder/context.js

@@ -13,6 +13,10 @@ export class PipelineContext {
     forceFullRebuild = false;
     schemaVersion;
     nativeDb;
+    /** Whether native engine is available (deferred — DB opened only when needed). */
+    nativeAvailable = false;
+    /** True when ctx.db is a NativeDbProxy — single rusqlite connection for the entire pipeline. */
+    nativeFirstProxy = false;
     // ── File collection (set by collectFiles stage) ────────────────────
     allFiles;
     discoveredDirs;

package/dist/domain/graph/builder/context.js.map

@@ -1 +1 @@
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+{"version":3,"file":"context.js","sourceRoot":"","sources":["../../../../src/domain/graph/builder/context.ts"],"names":[],"mappings":"AAoBA,MAAM,OAAO,eAAe;IAC1B,sEAAsE;IACtE,OAAO,CAAU;IACjB,EAAE,CAAyB;IAC3B,MAAM,CAAU;IAChB,MAAM,CAAmB;IACzB,IAAI,CAAkB;IACtB,UAAU,CAAc;IACxB,UAAU,CAAqB;IAC/B,aAAa,CAAiB;IAC9B,OAAO,CAAe;IACtB,WAAW,CAAW;IACtB,gBAAgB,GAAY,KAAK,CAAC;IAClC,aAAa,CAAU;IACvB,QAAQ,CAAkB;IAC1B,kFAAkF;IAClF,eAAe,GAAY,KAAK,CAAC;IACjC,gGAAgG;IAChG,gBAAgB,GAAY,KAAK,CAAC;IAElC,sEAAsE;IACtE,QAAQ,CAAY;IACpB,cAAc,CAAe;IAE7B,sEAAsE;IACtE,WAAW,CAAW;IACtB,YAAY,CAAiB;IAC7B,eAAe,CAAoB;IACnC,OAAO,CAAY;IACnB,SAAS,GAAY,KAAK,CAAC;IAE3B,sEAAsE;IACtE,UAAU,CAAgC;IAC1C,WAAW,CAAgC;IAC3C,YAAY,CAAiB;IAE7B,sEAAsE;IACtE,aAAa,CAA8B;IAC3C,WAAW,CAA0B;IACrC,eAAe,CAAe;IAE9B,sEAAsE;IACtE,WAAW,CAA0B;IACrC,kBAAkB,CAA0B;IAE5C,sEAAsE;IACtE,aAAa,GAAY,KAAK,CAAC;IAC/B,YAAY,CAAuB;IAEnC,sEAAsE;IACtE,MAAM,GAcF,EAAE,CAAC;IACP,UAAU,CAAU;CACrB"}

package/dist/domain/graph/builder/native-db-proxy.d.ts

@@ -0,0 +1,24 @@
+/**
+ * NativeDbProxy — wraps a NativeDatabase (rusqlite via napi-rs) to satisfy the
+ * BetterSqlite3Database interface.  When the native addon is available, the
+ * build pipeline uses this proxy as `ctx.db` so that every stage operates on a
+ * single rusqlite connection — no dual-connection WAL corruption, no
+ * open/close/reopen dance.
+ *
+ * When native is unavailable, the pipeline falls back to real better-sqlite3.
+ */
+import type { BetterSqlite3Database, NativeDatabase, SqliteStatement } from '../../../types.js';
+export declare class NativeDbProxy implements BetterSqlite3Database {
+    #private;
+    /** Advisory lock path — set by the pipeline so closeDb() can release it. */
+    __lockPath?: string;
+    constructor(nativeDb: NativeDatabase);
+    prepare<TRow = unknown>(sql: string): SqliteStatement<TRow>;
+    exec(sql: string): this;
+    pragma(sql: string): unknown;
+    close(): void;
+    get open(): boolean;
+    get name(): string;
+    transaction<F extends (...args: any[]) => any>(fn: F): (...args: F extends (...a: infer A) => unknown ? A : never) => ReturnType<F>;
+}
+//# sourceMappingURL=native-db-proxy.d.ts.map

package/dist/domain/graph/builder/native-db-proxy.d.ts.map

@@ -0,0 +1 @@
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package/dist/domain/graph/builder/native-db-proxy.js

@@ -0,0 +1,87 @@
+/**
+ * NativeDbProxy — wraps a NativeDatabase (rusqlite via napi-rs) to satisfy the
+ * BetterSqlite3Database interface.  When the native addon is available, the
+ * build pipeline uses this proxy as `ctx.db` so that every stage operates on a
+ * single rusqlite connection — no dual-connection WAL corruption, no
+ * open/close/reopen dance.
+ *
+ * When native is unavailable, the pipeline falls back to real better-sqlite3.
+ */
+/** Sanitize params for napi-rs: better-sqlite3 treats `undefined` as NULL,
+ *  but serde_json cannot represent `undefined`. Replace with `null`. */
+function sanitize(params) {
+    return params.map((p) => (p === undefined ? null : p));
+}
+export class NativeDbProxy {
+    #ndb;
+    /** Advisory lock path — set by the pipeline so closeDb() can release it. */
+    __lockPath;
+    constructor(nativeDb) {
+        this.#ndb = nativeDb;
+    }
+    prepare(sql) {
+        const ndb = this.#ndb;
+        const stmt = {
+            all(...params) {
+                return ndb.queryAll(sql, sanitize(params));
+            },
+            get(...params) {
+                return (ndb.queryGet(sql, sanitize(params)) ?? undefined);
+            },
+            run(...params) {
+                ndb.queryAll(sql, sanitize(params));
+                // Retrieve last_insert_rowid via SQLite scalar function so callers
+                // that depend on it (e.g. CFG block edge mapping) get correct values.
+                const row = ndb.queryGet('SELECT last_insert_rowid() AS rid', []);
+                return { changes: 0, lastInsertRowid: row?.rid ?? 0 };
+            },
+            iterate() {
+                throw new Error('iterate() is not supported via NativeDbProxy');
+            },
+            raw() {
+                return stmt; // no-op — .raw() is not used in the build pipeline
+            },
+        };
+        return stmt;
+    }
+    exec(sql) {
+        this.#ndb.exec(sql);
+        return this;
+    }
+    pragma(sql) {
+        return this.#ndb.pragma(sql);
+    }
+    close() {
+        // No-op: the pipeline manages the NativeDatabase lifecycle directly.
+        // closeDbPair() calls nativeDb.close() separately.
+    }
+    get open() {
+        return this.#ndb.isOpen;
+    }
+    get name() {
+        return this.#ndb.dbPath;
+    }
+    transaction(fn) {
+        const ndb = this.#ndb;
+        return ((...args) => {
+            // NOTE: nested transactions (savepoints) are not supported — ensure callers
+            // do not invoke a transaction() wrapper from within an existing transaction.
+            ndb.exec('BEGIN');
+            try {
+                const result = fn(...args);
+                ndb.exec('COMMIT');
+                return result;
+            }
+            catch (e) {
+                try {
+                    ndb.exec('ROLLBACK');
+                }
+                catch {
+                    // Ignore rollback errors — the original error is more important
+                }
+                throw e;
+            }
+        });
+    }
+}
+//# sourceMappingURL=native-db-proxy.js.map

package/dist/domain/graph/builder/native-db-proxy.js.map

@@ -0,0 +1 @@
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package/dist/domain/graph/builder/pipeline.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"pipeline.d.ts","sourceRoot":"","sources":["../../../../src/domain/graph/builder/pipeline.ts"],"names":[],"mappings":"AAyBA,OAAO,KAAK,EAAE,cAAc,EAAE,WAAW,EAA+B,MAAM,mBAAmB,CAAC;AA2uBlG;;;;GAIG;AACH,wBAAsB,UAAU,CAC9B,OAAO,EAAE,MAAM,EACf,IAAI,GAAE,cAAmB,GACxB,OAAO,CAAC,WAAW,GAAG,SAAS,CAAC,CAiClC"}

package/dist/domain/graph/builder/pipeline.js

@@ -4,9 +4,10 @@
  * This is the heart of the builder refactor (ROADMAP 3.9): the monolithic buildGraph()
  * is decomposed into independently testable stages that communicate via PipelineContext.
  */
+import fs from 'node:fs';
 import path from 'node:path';
 import { performance } from 'node:perf_hooks';
-import { closeDbPair, getBuildMeta, initSchema, MIGRATIONS, openDb, setBuildMeta, } from '../../../db/index.js';
+import { acquireAdvisoryLock, closeDbPair, getBuildMeta, initSchema, MIGRATIONS, openDb, releaseAdvisoryLock, setBuildMeta, } from '../../../db/index.js';
 import { detectWorkspaces, loadConfig } from '../../../infrastructure/config.js';
 import { debug, info, warn } from '../../../infrastructure/logger.js';
 import { loadNative } from '../../../infrastructure/native.js';
@@ -17,6 +18,7 @@ import { getActiveEngine } from '../../parser.js';
 import { setWorkspaces } from '../resolve.js';
 import { PipelineContext } from './context.js';
 import { loadPathAliases } from './helpers.js';
+import { NativeDbProxy } from './native-db-proxy.js';
 import { buildEdges } from './stages/build-edges.js';
 import { buildStructure } from './stages/build-structure.js';
 // Pipeline stages
@@ -33,28 +35,11 @@ function initializeEngine(ctx) {
         engine: ctx.opts.engine || 'auto',
         dataflow: ctx.opts.dataflow !== false,
         ast: ctx.opts.ast !== false,
-        nativeDb: ctx.nativeDb,
-        // WAL checkpoint callbacks for dual-connection WAL guard (#696, #715).
-        // Feature modules (ast, cfg, complexity, dataflow) receive `db` as a
-        // parameter and cannot tolerate close/reopen (stale reference). Instead,
-        // checkpoint the WAL so native writes start with a clean slate.
-        // After native writes, resumeJsDb checkpoints through rusqlite so
-        // better-sqlite3 never reads WAL frames from a different SQLite library.
-        suspendJsDb: ctx.nativeDb
-            ? () => {
-                ctx.db.pragma('wal_checkpoint(TRUNCATE)');
-            }
-            : undefined,
-        resumeJsDb: ctx.nativeDb
-            ? () => {
-                try {
-                    ctx.nativeDb?.exec('PRAGMA wal_checkpoint(TRUNCATE)');
-                }
-                catch (e) {
-                    debug(`resumeJsDb: WAL checkpoint failed (nativeDb may already be closed): ${toErrorMessage(e)}`);
-                }
-            }
-            : undefined,
+        // nativeDb and WAL callbacks are set later when NativeDatabase is opened
+        // (deferred to skip overhead on no-op rebuilds).
+        nativeDb: undefined,
+        suspendJsDb: undefined,
+        resumeJsDb: undefined,
     };
     const { name: engineName, version: engineVersion } = getActiveEngine(ctx.engineOpts);
     ctx.engineName = engineName;
@@ -67,10 +52,10 @@ function checkEngineSchemaMismatch(ctx) {
     ctx.forceFullRebuild = false;
     if (!ctx.incremental)
         return;
-    // Route metadata reads through NativeDatabase only when using the native engine,
-    // to avoid dual-SQLite WAL conflicts (rusqlite + better-sqlite3 on same file).
-    const useNativeDb = ctx.engineName === 'native' && !!ctx.nativeDb;
-    const meta = (key) => useNativeDb ? ctx.nativeDb.getBuildMeta(key) : getBuildMeta(ctx.db, key);
+    // NativeDatabase is deferred until after change detection, so always use
+    // better-sqlite3 for metadata reads here. Reads are safe — WAL conflicts
+    // only arise from concurrent writes.
+    const meta = (key) => getBuildMeta(ctx.db, key);
     const prevEngine = meta('engine');
     if (prevEngine && prevEngine !== ctx.engineName) {
         info(`Engine changed (${prevEngine} → ${ctx.engineName}), promoting to full rebuild.`);
@@ -107,36 +92,46 @@ function loadAliases(ctx) {
 function setupPipeline(ctx) {
     ctx.rootDir = path.resolve(ctx.rootDir);
     ctx.dbPath = path.join(ctx.rootDir, '.codegraph', 'graph.db');
-    ctx.db = openDb(ctx.dbPath);
-    // Use NativeDatabase for schema init when native engine is available (Phase 6.13).
-    // better-sqlite3 (ctx.db) is still always opened — needed for queries and stages
-    // that haven't been migrated to rusqlite yet.
-    // Skip native DB entirely when user explicitly requested --engine wasm.
+    // Detect whether native engine is available.
     const enginePref = ctx.opts.engine || 'auto';
     const native = enginePref !== 'wasm' ? loadNative() : null;
-    if (native?.NativeDatabase) {
+    ctx.nativeAvailable = !!native?.NativeDatabase;
+    // Native-first: use only rusqlite for the entire pipeline (no better-sqlite3).
+    // This eliminates the dual-connection WAL corruption problem and enables all
+    // native fast-paths (bulkInsertNodes, classifyRolesFull, etc.).
+    // Fallback: if native is unavailable or FORCE_JS is set, use better-sqlite3.
+    if (ctx.nativeAvailable &&
+        native?.NativeDatabase &&
+        process.env.CODEGRAPH_FORCE_JS_PIPELINE !== '1') {
         try {
+            const dir = path.dirname(ctx.dbPath);
+            if (!fs.existsSync(dir))
+                fs.mkdirSync(dir, { recursive: true });
+            acquireAdvisoryLock(ctx.dbPath);
             ctx.nativeDb = native.NativeDatabase.openReadWrite(ctx.dbPath);
             ctx.nativeDb.initSchema();
-            // Checkpoint WAL through rusqlite so better-sqlite3 sees a clean DB
-            // with no cross-library WAL frames (#715, #717).
-            ctx.nativeDb.exec('PRAGMA wal_checkpoint(TRUNCATE)');
+            const proxy = new NativeDbProxy(ctx.nativeDb);
+            proxy.__lockPath = `${ctx.dbPath}.lock`;
+            ctx.db = proxy;
+            ctx.nativeFirstProxy = true;
         }
         catch (err) {
-            warn(`NativeDatabase setup failed, falling back to JS: ${toErrorMessage(err)}`);
+            warn(`NativeDatabase setup failed, falling back to better-sqlite3: ${toErrorMessage(err)}`);
             try {
                 ctx.nativeDb?.close();
             }
-            catch (e) {
-                debug(`setupNativeDb: close failed during fallback: ${toErrorMessage(e)}`);
+            catch {
+                /* ignore */
             }
             ctx.nativeDb = undefined;
+            ctx.nativeFirstProxy = false;
+            releaseAdvisoryLock(`${ctx.dbPath}.lock`);
+            ctx.db = openDb(ctx.dbPath);
+            initSchema(ctx.db);
         }
-        // Always run JS initSchema so better-sqlite3 sees the schema —
-        // nativeDb is closed during pipeline stages and reopened for analyses.
-        initSchema(ctx.db);
     }
     else {
+        ctx.db = openDb(ctx.dbPath);
         initSchema(ctx.db);
     }
     ctx.config = loadConfig(ctx.rootDir);
@@ -234,7 +229,10 @@ function shouldSkipNativeOrchestrator(ctx) {
         return 'CODEGRAPH_FORCE_JS_PIPELINE=1';
     if (ctx.forceFullRebuild)
         return 'forceFullRebuild';
-    const orchestratorBuggy = !!ctx.engineVersion && semverCompare(ctx.engineVersion, '3.10.0') < 0;
+    // v3.9.0 addon had buggy incremental purge (wrong SQL on analysis tables,
+    // scoped removal over-detection). Fixed in v3.9.1 by PR #865. Gate on
+    // < 3.9.1 so v3.9.1+ uses the fast Rust orchestrator path.
+    const orchestratorBuggy = !!ctx.engineVersion && semverCompare(ctx.engineVersion, '3.9.1') < 0;
     if (orchestratorBuggy)
         return `buggy addon ${ctx.engineVersion}`;
     if (ctx.engineName !== 'native')
@@ -382,20 +380,25 @@ async function runPostNativeAnalysis(ctx, allFileSymbols, changedFiles) {
     else {
         analysisFileSymbols = allFileSymbols;
     }
-    // Reopen nativeDb for analysis features (suspend/resume WAL pattern).
-    const native = loadNative();
-    if (native?.NativeDatabase) {
-        try {
-            ctx.nativeDb = native.NativeDatabase.openReadWrite(ctx.dbPath);
-            if (ctx.engineOpts)
-                ctx.engineOpts.nativeDb = ctx.nativeDb;
-        }
-        catch {
-            ctx.nativeDb = undefined;
-            if (ctx.engineOpts)
-                ctx.engineOpts.nativeDb = undefined;
+    // In native-first mode, nativeDb is already open — no reopen needed.
+    if (!ctx.nativeFirstProxy) {
+        const native = loadNative();
+        if (native?.NativeDatabase) {
+            try {
+                ctx.nativeDb = native.NativeDatabase.openReadWrite(ctx.dbPath);
+                if (ctx.engineOpts)
+                    ctx.engineOpts.nativeDb = ctx.nativeDb;
+            }
+            catch {
+                ctx.nativeDb = undefined;
+                if (ctx.engineOpts)
+                    ctx.engineOpts.nativeDb = undefined;
+            }
         }
     }
+    else if (ctx.engineOpts) {
+        ctx.engineOpts.nativeDb = ctx.nativeDb;
+    }
     try {
         const { runAnalyses: runAnalysesFn } = await import('../../../ast-analysis/engine.js');
         const result = await runAnalysesFn(ctx.db, analysisFileSymbols, ctx.rootDir, ctx.opts, ctx.engineOpts);
@@ -407,8 +410,8 @@ async function runPostNativeAnalysis(ctx, allFileSymbols, changedFiles) {
     catch (err) {
         warn(`Analysis phases failed after native build: ${toErrorMessage(err)}`);
     }
-    // Close nativeDb after analyses
-    if (ctx.nativeDb) {
+    // Close nativeDb after analyses (skip in native-first — single connection stays open)
+    if (ctx.nativeDb && !ctx.nativeFirstProxy) {
         try {
             ctx.nativeDb.exec('PRAGMA wal_checkpoint(TRUNCATE)');
         }
@@ -453,6 +456,28 @@ async function tryNativeOrchestrator(ctx) {
         debug(`Skipping native orchestrator: ${skipReason}`);
         return undefined;
     }
+    // In native-first mode, nativeDb is already open from setupPipeline.
+    // Otherwise, open it on demand (deferred to skip overhead on no-op rebuilds).
+    if (!ctx.nativeDb && ctx.nativeAvailable) {
+        const native = loadNative();
+        if (native?.NativeDatabase) {
+            try {
+                ctx.nativeDb = native.NativeDatabase.openReadWrite(ctx.dbPath);
+                ctx.nativeDb.initSchema();
+                ctx.nativeDb.exec('PRAGMA wal_checkpoint(TRUNCATE)');
+            }
+            catch (err) {
+                warn(`NativeDatabase setup failed, falling back to JS: ${toErrorMessage(err)}`);
+                try {
+                    ctx.nativeDb?.close();
+                }
+                catch (e) {
+                    debug(`tryNativeOrchestrator: close failed during fallback: ${toErrorMessage(e)}`);
+                }
+                ctx.nativeDb = undefined;
+            }
+        }
+    }
     if (!ctx.nativeDb?.buildGraph)
         return undefined;
     const resultJson = ctx.nativeDb.buildGraph(ctx.rootDir, JSON.stringify(ctx.config), JSON.stringify(ctx.aliases), JSON.stringify(ctx.opts));
@@ -492,7 +517,8 @@ async function tryNativeOrchestrator(ctx) {
     // skipped structure, we must run the JS fallback.
     const needsStructure = !result.structureHandled;
     if (needsAnalysis || needsStructure) {
-        if (!handoffWalAfterNativeBuild(ctx)) {
+        // In native-first mode the proxy is already wired — no WAL handoff needed.
+        if (!ctx.nativeFirstProxy && !handoffWalAfterNativeBuild(ctx)) {
             // DB reopen failed — return partial result
             return formatNativeTimingResult(p, 0, analysisTiming);
         }
@@ -513,12 +539,34 @@ async function tryNativeOrchestrator(ctx) {
 }
 // ── Pipeline stages execution ───────────────────────────────────────────
 async function runPipelineStages(ctx) {
-    // Prevent dual-connection WAL corruption during pipeline stages: when both
-    // better-sqlite3 (ctx.db) and rusqlite (ctx.nativeDb) are open to the same
-    // WAL-mode file, native writes corrupt the DB. Close nativeDb so stages
-    // use JS fallback paths. Reopened before runAnalyses for feature modules
-    // that use suspendJsDb/resumeJsDb WAL checkpoint pattern (#696).
-    const hadNativeDb = !!ctx.nativeDb;
+    // ── Native-first mode ────────────────────────────────────────────────
+    // When ctx.nativeFirstProxy is true, ctx.db is a NativeDbProxy backed by
+    // the single rusqlite connection (ctx.nativeDb). No dual-connection WAL
+    // dance is needed — every stage uses the same connection transparently.
+    if (ctx.nativeFirstProxy) {
+        // Ensure engineOpts.nativeDb is set so stages can use dedicated native methods.
+        if (ctx.engineOpts) {
+            ctx.engineOpts.nativeDb = ctx.nativeDb;
+        }
+        await collectFiles(ctx);
+        await detectChanges(ctx);
+        if (ctx.earlyExit)
+            return;
+        await parseFiles(ctx);
+        await insertNodes(ctx);
+        await resolveImports(ctx);
+        await buildEdges(ctx);
+        await buildStructure(ctx);
+        await runAnalyses(ctx);
+        await finalize(ctx);
+        return;
+    }
+    // ── Legacy dual-connection mode (WASM / fallback) ────────────────────
+    // NativeDatabase is deferred — not opened during setup. collectFiles and
+    // detectChanges only need better-sqlite3. If no files changed, we exit
+    // early without ever opening the native connection, saving ~5ms.
+    // If nativeDb was opened by tryNativeOrchestrator (which fell through),
+    // suspend it now to avoid dual-connection WAL corruption during stages.
     if (ctx.db && ctx.nativeDb) {
         suspendNativeDb(ctx, 'pre-collect');
     }
@@ -527,10 +575,12 @@ async function runPipelineStages(ctx) {
     if (ctx.earlyExit)
         return;
     await parseFiles(ctx);
-    // Temporarily reopen nativeDb for insertNodes — it uses the WAL checkpoint
-    // guard internally (same pattern as feature modules). Closed again before
-    // resolveImports/buildEdges which don't yet have the guard (#709).
-    if (hadNativeDb && ctx.engineName === 'native') {
+    // For small incremental builds (≤smallFilesThreshold files), skip the nativeDb open/close
+    // cycle for insertNodes — the WAL checkpoint + connection churn (~5-10ms)
+    // exceeds the napi bulk-insert savings on a handful of files. The JS
+    // fallback path inside insertNodes handles this case efficiently.
+    const smallIncremental = !ctx.isFullBuild && ctx.allSymbols.size <= ctx.config.build.smallFilesThreshold;
+    if (ctx.nativeAvailable && ctx.engineName === 'native' && !smallIncremental) {
         reopenNativeDb(ctx, 'insertNodes');
     }
     await insertNodes(ctx);
@@ -544,13 +594,27 @@ async function runPipelineStages(ctx) {
     await buildStructure(ctx);
     // Reopen nativeDb for feature modules (ast, cfg, complexity, dataflow)
     // which use suspendJsDb/resumeJsDb WAL checkpoint before native writes.
-    if (hadNativeDb) {
+    // Skip for small incremental builds — same rationale as insertNodes above.
+    if (ctx.nativeAvailable && !smallIncremental) {
         reopenNativeDb(ctx, 'analyses');
         if (ctx.nativeDb && ctx.engineOpts) {
             ctx.engineOpts.nativeDb = ctx.nativeDb;
+            ctx.engineOpts.suspendJsDb = () => {
+                ctx.db.pragma('wal_checkpoint(TRUNCATE)');
+            };
+            ctx.engineOpts.resumeJsDb = () => {
+                try {
+                    ctx.nativeDb?.exec('PRAGMA wal_checkpoint(TRUNCATE)');
+                }
+                catch (e) {
+                    debug(`resumeJsDb: WAL checkpoint failed (nativeDb may already be closed): ${toErrorMessage(e)}`);
+                }
+            };
         }
         if (!ctx.nativeDb && ctx.engineOpts) {
             ctx.engineOpts.nativeDb = undefined;
+            ctx.engineOpts.suspendJsDb = undefined;
+            ctx.engineOpts.resumeJsDb = undefined;
         }
     }
     await runAnalyses(ctx);