npm - @optave/codegraph - Versions diffs - 3.8.1 → 3.9.0 - Mend

@optave/codegraph 3.8.1 → 3.9.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (66) hide show

package/README.md +11 -7
package/dist/ast-analysis/engine.d.ts.map +1 -1
package/dist/ast-analysis/engine.js +43 -0
package/dist/ast-analysis/engine.js.map +1 -1
package/dist/ast-analysis/visitors/complexity-visitor.d.ts.map +1 -1
package/dist/ast-analysis/visitors/complexity-visitor.js +50 -1
package/dist/ast-analysis/visitors/complexity-visitor.js.map +1 -1
package/dist/cli/commands/branch-compare.d.ts.map +1 -1
package/dist/cli/commands/branch-compare.js +4 -0
package/dist/cli/commands/branch-compare.js.map +1 -1
package/dist/cli/commands/diff-impact.d.ts.map +1 -1
package/dist/cli/commands/diff-impact.js +2 -1
package/dist/cli/commands/diff-impact.js.map +1 -1
package/dist/cli/commands/info.d.ts.map +1 -1
package/dist/cli/commands/info.js +3 -2
package/dist/cli/commands/info.js.map +1 -1
package/dist/db/repository/base.d.ts +6 -0
package/dist/db/repository/base.d.ts.map +1 -1
package/dist/db/repository/base.js +14 -0
package/dist/db/repository/base.js.map +1 -1
package/dist/db/repository/native-repository.d.ts +1 -0
package/dist/db/repository/native-repository.d.ts.map +1 -1
package/dist/db/repository/native-repository.js +23 -0
package/dist/db/repository/native-repository.js.map +1 -1
package/dist/db/repository/sqlite-repository.d.ts +1 -0
package/dist/db/repository/sqlite-repository.d.ts.map +1 -1
package/dist/db/repository/sqlite-repository.js +25 -0
package/dist/db/repository/sqlite-repository.js.map +1 -1
package/dist/domain/analysis/dependencies.d.ts.map +1 -1
package/dist/domain/analysis/dependencies.js +12 -8
package/dist/domain/analysis/dependencies.js.map +1 -1
package/dist/domain/graph/builder/pipeline.d.ts.map +1 -1
package/dist/domain/graph/builder/pipeline.js +154 -59
package/dist/domain/graph/builder/pipeline.js.map +1 -1
package/dist/domain/graph/builder/stages/build-edges.d.ts.map +1 -1
package/dist/domain/graph/builder/stages/build-edges.js +27 -1
package/dist/domain/graph/builder/stages/build-edges.js.map +1 -1
package/dist/domain/parser.d.ts +4 -0
package/dist/domain/parser.d.ts.map +1 -1
package/dist/domain/parser.js +128 -61
package/dist/domain/parser.js.map +1 -1
package/dist/domain/search/models.d.ts.map +1 -1
package/dist/domain/search/models.js +7 -5
package/dist/domain/search/models.js.map +1 -1
package/dist/extractors/javascript.js +19 -9
package/dist/extractors/javascript.js.map +1 -1
package/dist/types.d.ts +2 -1
package/dist/types.d.ts.map +1 -1
package/grammars/tree-sitter-erlang.wasm +0 -0
package/grammars/tree-sitter-gleam.wasm +0 -0
package/package.json +9 -9
package/src/ast-analysis/engine.ts +51 -0
package/src/ast-analysis/visitors/complexity-visitor.ts +55 -1
package/src/cli/commands/branch-compare.ts +4 -0
package/src/cli/commands/diff-impact.ts +2 -1
package/src/cli/commands/info.ts +3 -2
package/src/db/repository/base.ts +14 -0
package/src/db/repository/native-repository.ts +25 -0
package/src/db/repository/sqlite-repository.ts +26 -0
package/src/domain/analysis/dependencies.ts +11 -6
package/src/domain/graph/builder/pipeline.ts +185 -64
package/src/domain/graph/builder/stages/build-edges.ts +23 -1
package/src/domain/parser.ts +129 -63
package/src/domain/search/models.ts +11 -5
package/src/extractors/javascript.ts +21 -8
package/src/types.ts +2 -1

package/dist/db/repository/native-repository.js.map CHANGED Viewed

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package/dist/db/repository/sqlite-repository.d.ts CHANGED Viewed

@@ -29,6 +29,7 @@ export declare class SqliteRepository extends Repository {
     findNodesForTriage(opts?: TriageQueryOpts): TriageNodeRow[];
     findCallees(nodeId: number): RelatedNodeRow[];
     findCallers(nodeId: number): RelatedNodeRow[];
+    findCallersBatch(nodeIds: number[]): Map<number, RelatedNodeRow[]>;
     findDistinctCallers(nodeId: number): RelatedNodeRow[];
     findAllOutgoingEdges(nodeId: number): AdjacentEdgeRow[];
     findAllIncomingEdges(nodeId: number): AdjacentEdgeRow[];

package/dist/db/repository/sqlite-repository.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/db/repository/sqlite-repository.js CHANGED Viewed

@@ -76,6 +76,31 @@ export class SqliteRepository extends Repository {
     findCallers(nodeId) {
         return findCallers(this.#db, nodeId);
     }
+    findCallersBatch(nodeIds) {
+        if (nodeIds.length === 0)
+            return new Map();
+        const placeholders = nodeIds.map(() => '?').join(',');
+        const rows = this.#db
+            .prepare(`SELECT e.target_id AS queried_id, n.id, n.name, n.kind, n.file, n.line, n.end_line
+         FROM edges e JOIN nodes n ON e.source_id = n.id
+         WHERE e.target_id IN (${placeholders}) AND e.kind = 'calls'`)
+            .all(...nodeIds);
+        const result = new Map();
+        for (const row of rows) {
+            const qid = row.queried_id;
+            if (!result.has(qid))
+                result.set(qid, []);
+            result.get(qid).push({
+                id: row.id,
+                name: row.name,
+                kind: row.kind,
+                file: row.file,
+                line: row.line,
+                end_line: row.end_line,
+            });
+        }
+        return result;
+    }
     findDistinctCallers(nodeId) {
         return findDistinctCallers(this.#db, nodeId);
     }

package/dist/db/repository/sqlite-repository.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/domain/analysis/dependencies.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/domain/analysis/dependencies.js CHANGED Viewed

@@ -46,16 +46,22 @@ function buildTransitiveCallers(repo, callers, nodeId, depth, noTests) {
     const visited = new Set([nodeId]);
     let frontier = callers;
     for (let d = 2; d <= depth; d++) {
-        const nextFrontier = [];
-        for (const f of frontier) {
-            if (visited.has(f.id))
-                continue;
+        // Collect unvisited frontier IDs for a single batched query per depth
+        const unvisited = frontier.filter((f) => !visited.has(f.id));
+        for (const f of unvisited)
             visited.add(f.id);
-            const upstream = repo.findCallers(f.id);
+        if (unvisited.length === 0)
+            break;
+        const batchCallers = repo.findCallersBatch(unvisited.map((f) => f.id));
+        const nextFrontier = [];
+        const nextFrontierIds = new Set();
+        for (const f of unvisited) {
+            const upstream = batchCallers.get(f.id) || [];
             for (const u of upstream) {
                 if (noTests && isTestFile(u.file))
                     continue;
-                if (!visited.has(u.id)) {
+                if (!visited.has(u.id) && !nextFrontierIds.has(u.id)) {
+                    nextFrontierIds.add(u.id);
                     nextFrontier.push(u);
                 }
             }
@@ -69,8 +75,6 @@ function buildTransitiveCallers(repo, callers, nodeId, depth, noTests) {
             }));
         }
         frontier = nextFrontier;
-        if (frontier.length === 0)
-            break;
     }
     return transitiveCallers;
 }

package/dist/domain/analysis/dependencies.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/domain/graph/builder/pipeline.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"pipeline.d.ts","sourceRoot":"","sources":["../../../../src/domain/graph/builder/pipeline.ts"],"names":[],"mappings":"AAsBA,OAAO,KAAK,EAAE,cAAc,EAAE,WAAW,EAA+B,MAAM,mBAAmB,CAAC;AAySlG;;;;GAIG;AACH,wBAAsB,UAAU,CAC9B,OAAO,EAAE,MAAM,EACf,IAAI,GAAE,cAAmB,GACxB,OAAO,CAAC,WAAW,GAAG,SAAS,CAAC,CAoYlC"}

package/dist/domain/graph/builder/pipeline.js CHANGED Viewed

@@ -111,7 +111,9 @@ function setupPipeline(ctx) {
     // Use NativeDatabase for schema init when native engine is available (Phase 6.13).
     // better-sqlite3 (ctx.db) is still always opened — needed for queries and stages
     // that haven't been migrated to rusqlite yet.
-    const native = loadNative();
+    // Skip native DB entirely when user explicitly requested --engine wasm.
+    const enginePref = ctx.opts.engine || 'auto';
+    const native = enginePref !== 'wasm' ? loadNative() : null;
     if (native?.NativeDatabase) {
         try {
             ctx.nativeDb = native.NativeDatabase.openReadWrite(ctx.dbPath);
@@ -191,6 +193,8 @@ function closeNativeDb(ctx, label) {
 }
 /** Try to reopen the native connection for a given pipeline phase. */
 function reopenNativeDb(ctx, label) {
+    if ((ctx.opts.engine ?? 'auto') === 'wasm')
+        return;
     const native = loadNative();
     if (!native?.NativeDatabase)
         return;
@@ -293,10 +297,14 @@ export async function buildGraph(rootDir, opts = {}) {
         // napi crossings (eliminates WAL dual-connection dance). Falls back
         // to the JS pipeline on failure or when native is unavailable.
         //
-        // Native addon 3.8.0 has a path bug: file_symbols keys are absolute
+        // Native addon ≤3.8.0 has a path bug: file_symbols keys are absolute
         // paths but known_files are relative, causing zero import/call edges.
+        // Native addon ≤3.8.1 has an incremental barrel bug: the Rust pipeline
+        // doesn't re-parse barrel files that are imported by changed files,
+        // causing missing barrel import edges and lost analysis data for
+        // reverse-dep files during incremental builds.
         // Skip the orchestrator for affected versions (fixed in 3.9.0+).
-        const orchestratorBuggy = !!ctx.engineVersion && semverCompare(ctx.engineVersion, '3.8.0') <= 0;
+        const orchestratorBuggy = !!ctx.engineVersion && semverCompare(ctx.engineVersion, '3.8.1') <= 0;
         const forceJs = process.env.CODEGRAPH_FORCE_JS_PIPELINE === '1' ||
             ctx.forceFullRebuild ||
             orchestratorBuggy ||
@@ -345,16 +353,29 @@ export async function buildGraph(rootDir, opts = {}) {
                     edge_count: String(result.edgeCount ?? 0),
                 });
                 info(`Native build orchestrator completed: ${result.nodeCount ?? 0} nodes, ${result.edgeCount ?? 0} edges, ${result.fileCount ?? 0} files`);
-                // ── Run analysis phases (AST, complexity, CFG, dataflow) ──────
-                // Not yet ported to Rust. After the native orchestrator finishes,
-                // reconstruct a minimal fileSymbols map from the DB and run analyses
-                // via the JS engine (native standalone functions + WASM fallback).
+                // ── Run structure + analysis phases after native orchestrator ──
+                // Structure (directory nodes, contains edges, metrics) is not fully
+                // ported to Rust — the native pipeline only handles the small
+                // incremental fast path (≤5 changed files). For full builds and
+                // larger incremental builds, run JS buildStructure() to fill the gap.
+                // Analysis phases (AST, complexity, CFG, dataflow) are also not yet
+                // ported; run via JS engine after reconstructing fileSymbols from DB.
                 let analysisTiming = { astMs: 0, complexityMs: 0, cfgMs: 0, dataflowMs: 0 };
+                let structurePatchMs = 0;
                 const needsAnalysis = opts.ast !== false ||
                     opts.complexity !== false ||
                     opts.cfg !== false ||
                     opts.dataflow !== false;
-                if (needsAnalysis) {
+                // The native fast path only runs structure for small incremental
+                // builds: !isFullBuild && changedCount <= 5 && existingFileCount > 20.
+                // For all other cases (full builds, large incrementals), we must
+                // run JS buildStructure() to create directory nodes + contains edges (#804).
+                // Always run JS structure — the native fast-path has an additional
+                // existingFileCount > 20 guard that isn't reflected in the result JSON,
+                // so we can't reliably detect whether native actually ran structure.
+                const nativeHandledStructure = false;
+                const needsStructure = !nativeHandledStructure;
+                if (needsAnalysis || needsStructure) {
                     // WAL handoff: checkpoint through rusqlite, close nativeDb,
                     // reopen better-sqlite3 with a fresh page cache (#715, #736).
                     try {
@@ -381,8 +402,8 @@ export async function buildGraph(rootDir, opts = {}) {
                         ctx.db = openDb(ctx.dbPath);
                     }
                     catch (reopenErr) {
-                        warn(`Failed to reopen DB for analysis after native build: ${reopenErr.message}`);
-                        // Native build succeeded but we can't run analyses — return partial result
+                        warn(`Failed to reopen DB after native build: ${reopenErr.message}`);
+                        // Native build succeeded but we can't run post-processing — return partial result
                         return {
                             phases: {
                                 setupMs: +((p.setupMs ?? 0) + (p.collectMs ?? 0) + (p.detectMs ?? 0)).toFixed(1),
@@ -400,24 +421,15 @@ export async function buildGraph(rootDir, opts = {}) {
                             },
                         };
                     }
-                    // Reconstruct minimal fileSymbols from DB for analysis visitors.
-                    // Each entry needs definitions with name/kind/line/endLine so the
-                    // engine can match complexity/CFG results to the right functions.
-                    // For incremental builds, scope to only the files that were parsed
-                    // in this cycle (matching the JS pipeline's behaviour in run-analyses.ts).
-                    const changedFiles = result.changedFiles;
-                    let query = 'SELECT file, name, kind, line, end_line as endLine FROM nodes WHERE file IS NOT NULL';
-                    const params = [];
-                    if (changedFiles && changedFiles.length > 0) {
-                        const placeholders = changedFiles.map(() => '?').join(',');
-                        query += ` AND file IN (${placeholders})`;
-                        params.push(...changedFiles);
-                    }
-                    query += ' ORDER BY file, line';
-                    const rows = ctx.db.prepare(query).all(...params);
-                    const fileSymbols = new Map();
-                    for (const row of rows) {
-                        let entry = fileSymbols.get(row.file);
+                    // Reconstruct fileSymbols from DB. For structure we need ALL files
+                    // (to build complete directory tree); for analysis we scope to
+                    // changed files only. Load all files, then scope analysis later.
+                    const allFileRows = ctx.db
+                        .prepare('SELECT file, name, kind, line, end_line as endLine FROM nodes WHERE file IS NOT NULL ORDER BY file, line')
+                        .all();
+                    const allFileSymbols = new Map();
+                    for (const row of allFileRows) {
+                        let entry = allFileSymbols.get(row.file);
                         if (!entry) {
                             entry = {
                                 definitions: [],
@@ -427,7 +439,7 @@ export async function buildGraph(rootDir, opts = {}) {
                                 exports: [],
                                 typeMap: new Map(),
                             };
-                            fileSymbols.set(row.file, entry);
+                            allFileSymbols.set(row.file, entry);
                         }
                         entry.definitions.push({
                             name: row.name,
@@ -436,44 +448,127 @@ export async function buildGraph(rootDir, opts = {}) {
                             endLine: row.endLine ?? undefined,
                         });
                     }
-                    // Reopen nativeDb for analysis features (suspend/resume WAL pattern).
-                    const native = loadNative();
-                    if (native?.NativeDatabase) {
+                    // Populate import/export counts from DB edges so buildStructure
+                    // computes correct import_count/export_count in node_metrics.
+                    // The extractor arrays aren't persisted to the DB, so we derive
+                    // counts from edge data instead (#804).
+                    const importCountRows = ctx.db
+                        .prepare(`SELECT n.file, COUNT(*) AS cnt
+               FROM edges e JOIN nodes n ON e.source_id = n.id
+               WHERE e.kind IN ('imports', 'imports-type', 'dynamic-imports')
+                 AND n.file IS NOT NULL
+               GROUP BY n.file`)
+                        .all();
+                    for (const row of importCountRows) {
+                        const entry = allFileSymbols.get(row.file);
+                        if (entry)
+                            entry.imports = new Array(row.cnt);
+                    }
+                    // Export count: definitions in this file that are imported by other files
+                    const exportCountRows = ctx.db
+                        .prepare(`SELECT n_tgt.file, COUNT(DISTINCT n_tgt.id) AS cnt
+               FROM edges e
+               JOIN nodes n_tgt ON e.target_id = n_tgt.id
+               JOIN nodes n_src ON e.source_id = n_src.id
+               WHERE e.kind IN ('imports', 'imports-type', 'reexports')
+                 AND n_tgt.file IS NOT NULL
+                 AND n_src.file != n_tgt.file
+               GROUP BY n_tgt.file`)
+                        .all();
+                    for (const row of exportCountRows) {
+                        const entry = allFileSymbols.get(row.file);
+                        if (entry)
+                            entry.exports = new Array(row.cnt);
+                    }
+                    // ── Structure phase: directory nodes + contains edges (#804) ──
+                    if (needsStructure) {
+                        const structureStart = performance.now();
                         try {
-                            ctx.nativeDb = native.NativeDatabase.openReadWrite(ctx.dbPath);
-                            if (ctx.engineOpts)
-                                ctx.engineOpts.nativeDb = ctx.nativeDb;
+                            // Derive directories from file paths
+                            const directories = new Set();
+                            for (const relPath of allFileSymbols.keys()) {
+                                const parts = relPath.split('/');
+                                for (let i = 1; i < parts.length; i++) {
+                                    directories.add(parts.slice(0, i).join('/'));
+                                }
+                            }
+                            // Build line count map from DB metrics or file content
+                            const lineCountMap = new Map();
+                            const cachedLineCounts = ctx.db
+                                .prepare(`SELECT n.name AS file, m.line_count
+                 FROM node_metrics m JOIN nodes n ON m.node_id = n.id
+                 WHERE n.kind = 'file'`)
+                                .all();
+                            for (const row of cachedLineCounts) {
+                                lineCountMap.set(row.file, row.line_count);
+                            }
+                            // Native ran no structure at all — always do a full rebuild so
+                            // every directory gets nodes + contains edges (#804).
+                            const changedFilePaths = null;
+                            const { buildStructure: buildStructureFn } = (await import('../../../features/structure.js'));
+                            buildStructureFn(ctx.db, allFileSymbols, ctx.rootDir, lineCountMap, directories, changedFilePaths);
+                            debug('Structure phase completed after native orchestrator');
                         }
-                        catch {
-                            ctx.nativeDb = undefined;
-                            if (ctx.engineOpts)
-                                ctx.engineOpts.nativeDb = undefined;
+                        catch (err) {
+                            warn(`Structure phase failed after native build: ${toErrorMessage(err)}`);
                         }
+                        structurePatchMs = performance.now() - structureStart;
                     }
-                    try {
-                        const { runAnalyses: runAnalysesFn } = await import('../../../ast-analysis/engine.js');
-                        analysisTiming = await runAnalysesFn(ctx.db, fileSymbols, ctx.rootDir, opts, ctx.engineOpts);
-                    }
-                    catch (err) {
-                        warn(`Analysis phases failed after native build: ${toErrorMessage(err)}`);
-                    }
-                    // Close nativeDb after analyses
-                    if (ctx.nativeDb) {
-                        try {
-                            ctx.nativeDb.exec('PRAGMA wal_checkpoint(TRUNCATE)');
+                    // ── Analysis phase ──
+                    if (needsAnalysis) {
+                        // Scope analysis fileSymbols to changed files only
+                        const changedFiles = result.changedFiles;
+                        let analysisFileSymbols;
+                        if (changedFiles && changedFiles.length > 0) {
+                            analysisFileSymbols = new Map();
+                            for (const f of changedFiles) {
+                                const entry = allFileSymbols.get(f);
+                                if (entry)
+                                    analysisFileSymbols.set(f, entry);
+                            }
+                        }
+                        else {
+                            analysisFileSymbols = allFileSymbols;
                         }
-                        catch {
-                            /* ignore checkpoint errors */
+                        // Reopen nativeDb for analysis features (suspend/resume WAL pattern).
+                        const native = loadNative();
+                        if (native?.NativeDatabase) {
+                            try {
+                                ctx.nativeDb = native.NativeDatabase.openReadWrite(ctx.dbPath);
+                                if (ctx.engineOpts)
+                                    ctx.engineOpts.nativeDb = ctx.nativeDb;
+                            }
+                            catch {
+                                ctx.nativeDb = undefined;
+                                if (ctx.engineOpts)
+                                    ctx.engineOpts.nativeDb = undefined;
+                            }
                         }
                         try {
-                            ctx.nativeDb.close();
+                            const { runAnalyses: runAnalysesFn } = await import('../../../ast-analysis/engine.js');
+                            analysisTiming = await runAnalysesFn(ctx.db, analysisFileSymbols, ctx.rootDir, opts, ctx.engineOpts);
                         }
-                        catch {
-                            /* ignore close errors */
+                        catch (err) {
+                            warn(`Analysis phases failed after native build: ${toErrorMessage(err)}`);
+                        }
+                        // Close nativeDb after analyses
+                        if (ctx.nativeDb) {
+                            try {
+                                ctx.nativeDb.exec('PRAGMA wal_checkpoint(TRUNCATE)');
+                            }
+                            catch {
+                                /* ignore checkpoint errors */
+                            }
+                            try {
+                                ctx.nativeDb.close();
+                            }
+                            catch {
+                                /* ignore close errors */
+                            }
+                            ctx.nativeDb = undefined;
+                            if (ctx.engineOpts)
+                                ctx.engineOpts.nativeDb = undefined;
                         }
-                        ctx.nativeDb = undefined;
-                        if (ctx.engineOpts)
-                            ctx.engineOpts.nativeDb = undefined;
                     }
                 }
                 closeDbPair({ db: ctx.db, nativeDb: ctx.nativeDb });
@@ -484,7 +579,7 @@ export async function buildGraph(rootDir, opts = {}) {
                         insertMs: +(p.insertMs ?? 0).toFixed(1),
                         resolveMs: +(p.resolveMs ?? 0).toFixed(1),
                         edgesMs: +(p.edgesMs ?? 0).toFixed(1),
-                        structureMs: +(p.structureMs ?? 0).toFixed(1),
+                        structureMs: +((p.structureMs ?? 0) + structurePatchMs).toFixed(1),
                         rolesMs: +(p.rolesMs ?? 0).toFixed(1),
                         astMs: +(analysisTiming.astMs ?? 0).toFixed(1),
                         complexityMs: +(analysisTiming.complexityMs ?? 0).toFixed(1),