@optave/codegraph 3.5.0 → 3.7.0

package/dist/domain/graph/builder/stages/insert-nodes.js

@@ -14,6 +14,12 @@ import { bulkNodeIdsByFile } from '../../../../db/index.js';
 import { batchInsertEdges, batchInsertNodes, fileHash, fileStat, readFileSafe, } from '../helpers.js';
 // ── Native fast-path ─────────────────────────────────────────────────
 function tryNativeInsert(ctx) {
+    // Disabled: bulkInsertNodes corrupts the DB when both the JS (better-sqlite3)
+    // and Rust (rusqlite) connections are open to the same WAL-mode file.
+    // The native path was never operational before — it always crashed on null
+    // visibility serialisation. See #696 for the dual-connection fix.
+    if (ctx.db)
+        return false;
     // Use NativeDatabase persistent connection (Phase 6.15+).
     // Standalone napi functions were removed in 6.17 — falls through to JS if nativeDb unavailable.
     if (!ctx.nativeDb?.bulkInsertNodes)
@@ -28,14 +34,14 @@ function tryNativeInsert(ctx) {
                 name: def.name,
                 kind: def.kind,
                 line: def.line,
-                endLine: def.endLine ?? null,
-                visibility: def.visibility ?? null,
+                endLine: def.endLine ?? undefined,
+                visibility: def.visibility ?? undefined,
                 children: (def.children ?? []).map((c) => ({
                     name: c.name,
                     kind: c.kind,
                     line: c.line,
-                    endLine: c.endLine ?? null,
-                    visibility: c.visibility ?? null,
+                    endLine: c.endLine ?? undefined,
+                    visibility: c.visibility ?? undefined,
                 })),
             })),
             exports: symbols.exports.map((exp) => ({
@@ -259,17 +265,24 @@ function updateFileHashes(_db, allSymbols, precomputedData, metadataUpdates, roo
 }
 // ── Main entry point ────────────────────────────────────────────────
 export async function insertNodes(ctx) {
-    const { db, allSymbols, filesToParse, metadataUpdates, rootDir, removed } = ctx;
+    const { allSymbols, filesToParse, metadataUpdates, rootDir, removed } = ctx;
     // Populate fileSymbols before any DB writes (used by later stages)
     for (const [relPath, symbols] of allSymbols) {
         ctx.fileSymbols.set(relPath, symbols);
     }
     const t0 = performance.now();
     // Try native Rust path first — single transaction, no JS↔C overhead
-    if (ctx.engineName === 'native' && tryNativeInsert(ctx)) {
-        ctx.timing.insertMs = performance.now() - t0;
-        // Removed-file hash cleanup is handled inside the native call
-        return;
+    if (ctx.engineName === 'native') {
+        try {
+            if (tryNativeInsert(ctx)) {
+                ctx.timing.insertMs = performance.now() - t0;
+                // Removed-file hash cleanup is handled inside the native call
+                return;
+            }
+        }
+        catch {
+            // Native insert failed — fall through to JS implementation
+        }
     }
     // JS fallback
     const precomputedData = new Map();
@@ -279,21 +292,21 @@ export async function insertNodes(ctx) {
     }
     let upsertHash;
     try {
-        upsertHash = db.prepare('INSERT OR REPLACE INTO file_hashes (file, hash, mtime, size) VALUES (?, ?, ?, ?)');
+        upsertHash = ctx.db.prepare('INSERT OR REPLACE INTO file_hashes (file, hash, mtime, size) VALUES (?, ?, ?, ?)');
     }
     catch {
         upsertHash = null;
     }
-    const insertAll = db.transaction(() => {
-        insertDefinitionsAndExports(db, allSymbols);
-        insertChildrenAndEdges(db, allSymbols);
-        updateFileHashes(db, allSymbols, precomputedData, metadataUpdates, rootDir, upsertHash);
+    const insertAll = ctx.db.transaction(() => {
+        insertDefinitionsAndExports(ctx.db, allSymbols);
+        insertChildrenAndEdges(ctx.db, allSymbols);
+        updateFileHashes(ctx.db, allSymbols, precomputedData, metadataUpdates, rootDir, upsertHash);
     });
     insertAll();
     ctx.timing.insertMs = performance.now() - t0;
     // Clean up removed file hashes
     if (upsertHash && removed.length > 0) {
-        const deleteHash = db.prepare('DELETE FROM file_hashes WHERE file = ?');
+        const deleteHash = ctx.db.prepare('DELETE FROM file_hashes WHERE file = ?');
         for (const relPath of removed) {
             deleteHash.run(relPath);
         }

package/dist/domain/graph/builder/stages/insert-nodes.js.map

@@ -1 +1 @@
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package/dist/domain/graph/builder/stages/resolve-imports.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"resolve-imports.d.ts","sourceRoot":"","sources":["../../../../../src/domain/graph/builder/stages/resolve-imports.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,eAAe,CAAC;AAQrD,wBAAsB,cAAc,CAAC,GAAG,EAAE,eAAe,GAAG,OAAO,CAAC,IAAI,CAAC,CA8HxE;AAED,wBAAgB,WAAW,CAAC,GAAG,EAAE,eAAe,EAAE,OAAO,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,GAAG,MAAM,CAO/F;AAED,wBAAgB,YAAY,CAAC,GAAG,EAAE,eAAe,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAO3E;AAED,wBAAgB,mBAAmB,CACjC,GAAG,EAAE,eAAe,EACpB,UAAU,EAAE,MAAM,EAClB,UAAU,EAAE,MAAM,EAClB,OAAO,GAAE,GAAG,CAAC,MAAM,CAAqB,GACvC,MAAM,GAAG,IAAI,CA8Bf"}
+{"version":3,"file":"resolve-imports.d.ts","sourceRoot":"","sources":["../../../../../src/domain/graph/builder/stages/resolve-imports.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,eAAe,CAAC;AAQrD,wBAAsB,cAAc,CAAC,GAAG,EAAE,eAAe,GAAG,OAAO,CAAC,IAAI,CAAC,CA8HxE;AAED,wBAAgB,WAAW,CAAC,GAAG,EAAE,eAAe,EAAE,OAAO,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,GAAG,MAAM,CAO/F;AAED,wBAAgB,YAAY,CAAC,GAAG,EAAE,eAAe,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAO3E;AAED,wBAAgB,mBAAmB,CACjC,GAAG,EAAE,eAAe,EACpB,UAAU,EAAE,MAAM,EAClB,UAAU,EAAE,MAAM,EAClB,OAAO,GAAE,GAAG,CAAC,MAAM,CAAqB,GACvC,MAAM,GAAG,IAAI,CA8Bf"}

package/dist/domain/graph/builder/stages/resolve-imports.js

@@ -1,5 +1,6 @@
 import path from 'node:path';
 import { performance } from 'node:perf_hooks';
+import { debug } from '../../../../infrastructure/logger.js';
 import { parseFilesAuto } from '../../../parser.js';
 import { resolveImportPath, resolveImportsBatch } from '../../resolve.js';
 export async function resolveImports(ctx) {
@@ -99,8 +100,8 @@ export async function resolveImports(ctx) {
                     }
                 }
             }
-            catch {
-                /* skip if unreadable */
+            catch (e) {
+                debug(`Barrel re-parse failed (non-fatal): ${e.message}`);
             }
         }
     }

package/dist/domain/graph/builder/stages/resolve-imports.js.map

@@ -1 +1 @@
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package/dist/domain/graph/resolve.d.ts

@@ -6,10 +6,6 @@ import type { BareSpecifier, BatchResolvedMap, ImportBatchItem, PathAliases } fr
  * No sub: "pkg"            → { packageName: "pkg", subpath: "." }
  */
 export declare function parseBareSpecifier(specifier: string): BareSpecifier | null;
-/**
- * Resolve a bare specifier through the package.json exports field.
- * Returns an absolute path or null.
- */
 export declare function resolveViaExports(specifier: string, rootDir: string): string | null;
 /** Clear the exports cache (for testing). */
 export declare function clearExportsCache(): void;

package/dist/domain/graph/resolve.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"resolve.d.ts","sourceRoot":"","sources":["../../../src/domain/graph/resolve.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EAAE,aAAa,EAAE,gBAAgB,EAAE,eAAe,EAAE,WAAW,EAAE,MAAM,gBAAgB,CAAC;AAOpG;;;;;GAKG;AACH,wBAAgB,kBAAkB,CAAC,SAAS,EAAE,MAAM,GAAG,aAAa,GAAG,IAAI,CAkB1E;AA+GD,wBAAgB,iBAAiB,CAAC,SAAS,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAiCnF;AAED,6CAA6C;AAC7C,wBAAgB,iBAAiB,IAAI,IAAI,CAExC;AAUD;;;GAGG;AACH,wBAAgB,aAAa,CAC3B,OAAO,EAAE,MAAM,EACf,GAAG,EAAE,GAAG,CAAC,MAAM,EAAE;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,GAAG,IAAI,CAAA;CAAE,CAAC,GACtD,IAAI,CAIN;AASD;;;;;;;GAOG;AACH,wBAAgB,mBAAmB,CAAC,SAAS,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CA2DrF;AAED;;;GAGG;AACH,wBAAgB,mBAAmB,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAEjE;AAED,4CAA4C;AAC5C,wBAAgB,mBAAmB,IAAI,IAAI,CAG1C;AAiDD,qDAAqD;AACrD,wBAAgB,gBAAgB,IAAI,IAAI,CAEvC;AAID;;;GAGG;AACH,wBAAgB,uBAAuB,CACrC,OAAO,EAAE,WAAW,GAAG,IAAI,GAAG,SAAS,GACtC;IAAE,OAAO,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE;QAAE,OAAO,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,EAAE,CAAA;KAAE,EAAE,CAAA;CAAE,GAAG,IAAI,CAS7E;AAyCD,iBAAS,mBAAmB,CAC1B,QAAQ,EAAE,MAAM,EAChB,YAAY,EAAE,MAAM,EACpB,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,WAAW,GAAG,IAAI,GAC1B,MAAM,CA+CR;AAED,iBAAS,mBAAmB,CAC1B,UAAU,EAAE,MAAM,EAClB,UAAU,EAAE,MAAM,EAClB,YAAY,EAAE,MAAM,GAAG,IAAI,GAC1B,MAAM,CAWR;AAID;;;GAGG;AACH,wBAAgB,iBAAiB,CAC/B,QAAQ,EAAE,MAAM,EAChB,YAAY,EAAE,MAAM,EACpB,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,WAAW,GAAG,IAAI,GAC1B,MAAM,CAsBR;AAED;;;GAGG;AACH,wBAAgB,iBAAiB,CAC/B,UAAU,EAAE,MAAM,EAClB,UAAU,EAAE,MAAM,EAClB,YAAY,EAAE,MAAM,GAAG,IAAI,GAC1B,MAAM,CAYR;AAED;;;GAGG;AACH,wBAAgB,mBAAmB,CACjC,MAAM,EAAE,eAAe,EAAE,EACzB,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,WAAW,GAAG,IAAI,EAC3B,UAAU,CAAC,EAAE,MAAM,EAAE,GAAG,IAAI,GAC3B,gBAAgB,GAAG,IAAI,CA4BzB;AAID,OAAO,EAAE,mBAAmB,EAAE,mBAAmB,EAAE,CAAC"}

package/dist/domain/graph/resolve.js

@@ -120,6 +120,33 @@ function matchSubpathPattern(pattern, subpath) {
  * Resolve a bare specifier through the package.json exports field.
  * Returns an absolute path or null.
  */
+/** Try to resolve a condition target to a file path in packageDir. */
+function tryResolveTarget(target, packageDir) {
+    if (!target)
+        return null;
+    const resolved = path.resolve(packageDir, target);
+    return fs.existsSync(resolved) ? resolved : null;
+}
+/** Resolve subpath against a subpath map (object with "." keys). */
+function resolveSubpathMap(exports, subpath, packageDir) {
+    // Exact match first
+    if (subpath in exports) {
+        return tryResolveTarget(resolveCondition(exports[subpath]), packageDir);
+    }
+    // Pattern matching (keys with *)
+    for (const [pattern, value] of Object.entries(exports)) {
+        if (!pattern.includes('*'))
+            continue;
+        const matched = matchSubpathPattern(pattern, subpath);
+        if (matched == null)
+            continue;
+        const rawTarget = resolveCondition(value);
+        if (!rawTarget)
+            continue;
+        return tryResolveTarget(rawTarget.replace(/\*/g, matched), packageDir);
+    }
+    return null;
+}
 export function resolveViaExports(specifier, rootDir) {
     const parsed = parseBareSpecifier(specifier);
     if (!parsed)
@@ -133,64 +160,21 @@ export function resolveViaExports(specifier, rootDir) {
     const { subpath } = parsed;
     // Simple string exports: "exports": "./index.js"
     if (typeof exports === 'string') {
-        if (subpath === '.') {
-            const resolved = path.resolve(packageDir, exports);
-            return fs.existsSync(resolved) ? resolved : null;
-        }
-        return null;
+        return subpath === '.' ? tryResolveTarget(exports, packageDir) : null;
     }
     // Array form at top level
     if (Array.isArray(exports)) {
-        if (subpath === '.') {
-            const target = resolveCondition(exports);
-            if (target) {
-                const resolved = path.resolve(packageDir, target);
-                return fs.existsSync(resolved) ? resolved : null;
-            }
-        }
-        return null;
+        return subpath === '.' ? tryResolveTarget(resolveCondition(exports), packageDir) : null;
     }
     if (typeof exports !== 'object')
         return null;
-    // Determine if exports is a conditions object (no keys start with ".")
-    // or a subpath map (keys start with ".")
+    // Determine if exports is a conditions object or a subpath map
     const keys = Object.keys(exports);
     const isSubpathMap = keys.length > 0 && keys.some((k) => k.startsWith('.'));
     if (!isSubpathMap) {
-        // Conditions object at top level → applies to "." subpath only
-        if (subpath === '.') {
-            const target = resolveCondition(exports);
-            if (target) {
-                const resolved = path.resolve(packageDir, target);
-                return fs.existsSync(resolved) ? resolved : null;
-            }
-        }
-        return null;
-    }
-    // Subpath map: try exact match first, then pattern match
-    if (subpath in exports) {
-        const target = resolveCondition(exports[subpath]);
-        if (target) {
-            const resolved = path.resolve(packageDir, target);
-            return fs.existsSync(resolved) ? resolved : null;
-        }
-    }
-    // Pattern matching (keys with *)
-    for (const [pattern, value] of Object.entries(exports)) {
-        if (!pattern.includes('*'))
-            continue;
-        const matched = matchSubpathPattern(pattern, subpath);
-        if (matched == null)
-            continue;
-        const rawTarget = resolveCondition(value);
-        if (!rawTarget)
-            continue;
-        const target = rawTarget.replace(/\*/g, matched);
-        const resolved = path.resolve(packageDir, target);
-        if (fs.existsSync(resolved))
-            return resolved;
+        return subpath === '.' ? tryResolveTarget(resolveCondition(exports), packageDir) : null;
     }
-    return null;
+    return resolveSubpathMap(exports, subpath, packageDir);
 }
 /** Clear the exports cache (for testing). */
 export function clearExportsCache() {

package/dist/domain/graph/resolve.js.map

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package/dist/domain/graph/watcher.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"watcher.d.ts","sourceRoot":"","sources":["../../../src/domain/graph/watcher.ts"],"names":[],"mappings":"AAoBA,wBAAsB,YAAY,CAAC,OAAO,EAAE,MAAM,EAAE,IAAI,GAAE;IAAE,MAAM,CAAC,EAAE,MAAM,CAAA;CAAO,GAAG,OAAO,CAAC,IAAI,CAAC,CAwKjG"}
+{"version":3,"file":"watcher.d.ts","sourceRoot":"","sources":["../../../src/domain/graph/watcher.ts"],"names":[],"mappings":"AAoBA,wBAAsB,YAAY,CAAC,OAAO,EAAE,MAAM,EAAE,IAAI,GAAE;IAAE,MAAM,CAAC,EAAE,MAAM,CAAA;CAAO,GAAG,OAAO,CAAC,IAAI,CAAC,CAsKjG"}

package/dist/domain/graph/watcher.js

@@ -1,7 +1,7 @@
 import fs from 'node:fs';
 import path from 'node:path';
 import { closeDb, getNodeId as getNodeIdQuery, initSchema, openDb } from '../../db/index.js';
-import { info } from '../../infrastructure/logger.js';
+import { debug, info } from '../../infrastructure/logger.js';
 import { EXTENSIONS, IGNORE_DIRS, normalizePath } from '../../shared/constants.js';
 import { DbError } from '../../shared/errors.js';
 import { createParseTreeCache, getActiveEngine } from '../parser.js';
@@ -28,9 +28,9 @@ export async function watchProject(rootDir, opts = {}) {
         ast: false,
     };
     const { name: engineName, version: engineVersion } = getActiveEngine(engineOpts);
-    console.log(`Watch mode using ${engineName} engine${engineVersion ? ` (v${engineVersion})` : ''}`);
+    info(`Watch mode using ${engineName} engine${engineVersion ? ` (v${engineVersion})` : ''}`);
     const cache = createParseTreeCache();
-    console.log(cache
+    info(cache
         ? 'Incremental parsing enabled (native tree cache)'
         : 'Incremental parsing unavailable (full re-parse)');
     const stmts = {
@@ -81,8 +81,8 @@ export async function watchProject(rootDir, opts = {}) {
             try {
                 appendJournalEntries(rootDir, entries);
             }
-            catch {
-                /* journal write failure is non-fatal */
+            catch (e) {
+                debug(`Journal write failed (non-fatal): ${e.message}`);
             }
             const changeEvents = updates.map((r) => buildChangeEvent(r.file, r.event, r.symbolDiff, {
                 nodesBefore: r.nodesBefore,
@@ -92,8 +92,8 @@ export async function watchProject(rootDir, opts = {}) {
             try {
                 appendChangeEvents(rootDir, changeEvents);
             }
-            catch {
-                /* change event write failure is non-fatal */
+            catch (e) {
+                debug(`Change event write failed (non-fatal): ${e.message}`);
             }
         }
         for (const r of updates) {
@@ -107,8 +107,8 @@ export async function watchProject(rootDir, opts = {}) {
             }
         }
     }
-    console.log(`Watching ${rootDir} for changes...`);
-    console.log('Press Ctrl+C to stop.\n');
+    info(`Watching ${rootDir} for changes...`);
+    info('Press Ctrl+C to stop.');
     const watcher = fs.watch(rootDir, { recursive: true }, (_eventType, filename) => {
         if (!filename)
             return;
@@ -123,7 +123,7 @@ export async function watchProject(rootDir, opts = {}) {
         timer = setTimeout(processPending, DEBOUNCE_MS);
     });
     process.on('SIGINT', () => {
-        console.log('\nStopping watcher...');
+        info('Stopping watcher...');
         watcher.close();
         // Flush any pending file paths to journal before exit
         if (pending.size > 0) {
@@ -133,8 +133,8 @@ export async function watchProject(rootDir, opts = {}) {
             try {
                 appendJournalEntries(rootDir, entries);
             }
-            catch {
-                /* best-effort */
+            catch (e) {
+                debug(`Journal flush on exit failed (non-fatal): ${e.message}`);
             }
         }
         if (cache)

package/dist/domain/graph/watcher.js.map

@@ -1 +1 @@
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package/dist/domain/parser.d.ts

@@ -1,6 +1,6 @@
 import { Parser } from 'web-tree-sitter';
 import type { EngineMode, ExtractorOutput, LanguageRegistryEntry } from '../types.js';
-export { extractCSharpSymbols, extractGoSymbols, extractHCLSymbols, extractJavaSymbols, extractPHPSymbols, extractPythonSymbols, extractRubySymbols, extractRustSymbols, extractSymbols, } from '../extractors/index.js';
+export { extractBashSymbols, extractCppSymbols, extractCSharpSymbols, extractCSymbols, extractDartSymbols, extractElixirSymbols, extractGoSymbols, extractHaskellSymbols, extractHCLSymbols, extractJavaSymbols, extractKotlinSymbols, extractLuaSymbols, extractOCamlSymbols, extractPHPSymbols, extractPythonSymbols, extractRubySymbols, extractRustSymbols, extractScalaSymbols, extractSwiftSymbols, extractSymbols, extractZigSymbols, } from '../extractors/index.js';
 export type { LanguageRegistryEntry } from '../types.js';
 interface ParseEngineOpts {
     engine?: EngineMode;

package/dist/domain/parser.d.ts.map

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