@optave/codegraph 3.4.0 → 3.4.1

package/dist/graph/algorithms/leiden/adapter.js

@@ -13,16 +13,9 @@ function taGet(a, i) {
 function taAdd(a, i, v) {
     a[i] = taGet(a, i) + v;
 }
-function taSub(a, i, v) {
-    a[i] = taGet(a, i) - v;
-}
 export function makeGraphAdapter(graph, opts = {}) {
-    const linkWeight = opts.linkWeight ||
-        // biome-ignore lint/complexity/useLiteralKeys: index signature requires bracket access
-        ((attrs) => (attrs && typeof attrs['weight'] === 'number' ? attrs['weight'] : 1));
-    const nodeSize = 
-    // biome-ignore lint/complexity/useLiteralKeys: index signature requires bracket access
-    opts.nodeSize || ((attrs) => (attrs && typeof attrs['size'] === 'number' ? attrs['size'] : 1));
+    const linkWeight = opts.linkWeight || ((attrs) => (attrs && typeof attrs.weight === 'number' ? attrs.weight : 1));
+    const nodeSize = opts.nodeSize || ((attrs) => (attrs && typeof attrs.size === 'number' ? attrs.size : 1));
     const directed = !!opts.directed;
     const baseNodeIds = opts.baseNodeIds;
     // Build dense node index mapping

package/dist/graph/algorithms/leiden/adapter.js.map

@@ -1 +1 @@
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package/dist/graph/classifiers/roles.d.ts

@@ -15,6 +15,7 @@ export interface ClassifiableNode {
     kind?: string;
     file?: string;
 }
+export declare function median(sorted: number[]): number;
 export interface RoleClassificationNode {
     id: string;
     name: string;
@@ -29,5 +30,8 @@ export interface RoleClassificationNode {
 /**
  * Classify nodes into architectural roles based on fan-in/fan-out metrics.
  */
-export declare function classifyRoles(nodes: RoleClassificationNode[]): Map<string, Role>;
+export declare function classifyRoles(nodes: RoleClassificationNode[], medianOverrides?: {
+    fanIn: number;
+    fanOut: number;
+}): Map<string, Role>;
 //# sourceMappingURL=roles.d.ts.map

package/dist/graph/classifiers/roles.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"roles.d.ts","sourceRoot":"","sources":["../../../src/graph/classifiers/roles.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,KAAK,EAAe,IAAI,EAAE,MAAM,gBAAgB,CAAC;AAExD,eAAO,MAAM,wBAAwB,EAAE,SAAS,MAAM,EAAqC,CAAC;AAiB5F,MAAM,WAAW,gBAAgB;IAC/B,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAgCD,MAAM,WAAW,sBAAsB;IACrC,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC;IACf,UAAU,EAAE,OAAO,CAAC;IACpB,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,eAAe,CAAC,EAAE,MAAM,CAAC;CAC1B;AAED;;GAEG;AACH,wBAAgB,aAAa,CAAC,KAAK,EAAE,sBAAsB,EAAE,GAAG,GAAG,CAAC,MAAM,EAAE,IAAI,CAAC,CAiDhF"}
+{"version":3,"file":"roles.d.ts","sourceRoot":"","sources":["../../../src/graph/classifiers/roles.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,KAAK,EAAe,IAAI,EAAE,MAAM,gBAAgB,CAAC;AAExD,eAAO,MAAM,wBAAwB,EAAE,SAAS,MAAM,EAAqC,CAAC;AAiB5F,MAAM,WAAW,gBAAgB;IAC/B,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AA0BD,wBAAgB,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,CAI/C;AAED,MAAM,WAAW,sBAAsB;IACrC,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC;IACf,UAAU,EAAE,OAAO,CAAC;IACpB,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,eAAe,CAAC,EAAE,MAAM,CAAC;CAC1B;AAED;;GAEG;AACH,wBAAgB,aAAa,CAC3B,KAAK,EAAE,sBAAsB,EAAE,EAC/B,eAAe,CAAC,EAAE;IAAE,KAAK,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,GAClD,GAAG,CAAC,MAAM,EAAE,IAAI,CAAC,CAuDnB"}

package/dist/graph/classifiers/roles.js

@@ -43,7 +43,7 @@ function classifyDeadSubRole(node) {
     return 'dead-unresolved';
 }
 // ── Helpers ────────────────────────────────────────────────────────
-function median(sorted) {
+export function median(sorted) {
     if (sorted.length === 0)
         return 0;
     const mid = Math.floor(sorted.length / 2);
@@ -52,19 +52,27 @@ function median(sorted) {
 /**
  * Classify nodes into architectural roles based on fan-in/fan-out metrics.
  */
-export function classifyRoles(nodes) {
+export function classifyRoles(nodes, medianOverrides) {
     if (nodes.length === 0)
         return new Map();
-    const nonZeroFanIn = nodes
-        .filter((n) => n.fanIn > 0)
-        .map((n) => n.fanIn)
-        .sort((a, b) => a - b);
-    const nonZeroFanOut = nodes
-        .filter((n) => n.fanOut > 0)
-        .map((n) => n.fanOut)
-        .sort((a, b) => a - b);
-    const medFanIn = median(nonZeroFanIn);
-    const medFanOut = median(nonZeroFanOut);
+    let medFanIn;
+    let medFanOut;
+    if (medianOverrides) {
+        medFanIn = medianOverrides.fanIn;
+        medFanOut = medianOverrides.fanOut;
+    }
+    else {
+        const nonZeroFanIn = nodes
+            .filter((n) => n.fanIn > 0)
+            .map((n) => n.fanIn)
+            .sort((a, b) => a - b);
+        const nonZeroFanOut = nodes
+            .filter((n) => n.fanOut > 0)
+            .map((n) => n.fanOut)
+            .sort((a, b) => a - b);
+        medFanIn = median(nonZeroFanIn);
+        medFanOut = median(nonZeroFanOut);
+    }
     const result = new Map();
     for (const node of nodes) {
         const highIn = node.fanIn >= medFanIn && node.fanIn > 0;

package/dist/graph/classifiers/roles.js.map

@@ -1 +1 @@
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package/dist/index.d.ts

@@ -30,6 +30,7 @@ export { sequenceData } from './features/sequence.js';
 export { hotspotsData, moduleBoundariesData, structureData } from './features/structure.js';
 export { triageData } from './features/triage.js';
 export { loadConfig } from './infrastructure/config.js';
+export type { ArrayCompatSet } from './shared/constants.js';
 export { EXTENSIONS, IGNORE_DIRS } from './shared/constants.js';
 export { AnalysisError, BoundaryError, CodegraphError, ConfigError, DbError, EngineError, ParseError, ResolutionError, } from './shared/errors.js';
 export { EVERY_EDGE_KIND, EVERY_SYMBOL_KIND } from './shared/kinds.js';

package/dist/index.d.ts.map

@@ -1 +1 @@
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package/dist/index.js.map

@@ -1 +1 @@
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package/dist/infrastructure/config.d.ts.map

@@ -1 +1 @@
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package/dist/infrastructure/config.js

@@ -1,6 +1,7 @@
 import { execFileSync } from 'node:child_process';
 import fs from 'node:fs';
 import path from 'node:path';
+import { toErrorMessage } from '../shared/errors.js';
 import { debug, warn } from './logger.js';
 export const CONFIG_FILES = [
     '.codegraphrc.json',
@@ -163,9 +164,9 @@ export function loadConfig(cwd) {
                 debug(`Loaded config from ${filePath}`);
                 const merged = mergeConfig(DEFAULTS, config);
                 if ('excludeTests' in config && !(config.query && 'excludeTests' in config.query)) {
-                    merged['query']['excludeTests'] = Boolean(config.excludeTests);
+                    merged.query.excludeTests = Boolean(config.excludeTests);
                 }
-                delete merged['excludeTests'];
+                delete merged.excludeTests;
                 const result = resolveSecrets(applyEnvOverrides(merged));
                 _configCache.set(cwd, structuredClone(result));
                 return result;
@@ -215,7 +216,7 @@ export function resolveSecrets(config) {
             stdio: ['ignore', 'pipe', 'pipe'],
         }).trim();
         if (result) {
-            config.llm['apiKey'] = result;
+            config.llm.apiKey = result;
         }
     }
     catch (err) {
@@ -294,8 +295,8 @@ function resolveWorkspaceEntry(pkgDir) {
                 return candidate;
         }
     }
-    catch {
-        /* ignore */
+    catch (e) {
+        debug(`resolveWorkspaceEntry: package.json probe failed for ${pkgDir}: ${toErrorMessage(e)}`);
     }
     return null;
 }
@@ -328,8 +329,8 @@ export function detectWorkspaces(rootDir) {
                 }
             }
         }
-        catch {
-            /* ignore */
+        catch (e) {
+            debug(`detectWorkspaces: failed to parse pnpm-workspace.yaml: ${toErrorMessage(e)}`);
         }
     }
     // 2. package.json workspaces (npm/yarn)
@@ -348,8 +349,8 @@ export function detectWorkspaces(rootDir) {
                     patterns.push(...ws.packages);
                 }
             }
-            catch {
-                /* ignore */
+            catch (e) {
+                debug(`detectWorkspaces: failed to parse package.json workspaces: ${toErrorMessage(e)}`);
             }
         }
     }
@@ -364,8 +365,8 @@ export function detectWorkspaces(rootDir) {
                     patterns.push(...lerna.packages);
                 }
             }
-            catch {
-                /* ignore */
+            catch (e) {
+                debug(`detectWorkspaces: failed to parse lerna.json: ${toErrorMessage(e)}`);
             }
         }
     }

package/dist/infrastructure/config.js.map

@@ -1 +1 @@
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package/dist/infrastructure/native.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"native.d.ts","sourceRoot":"","sources":["../../src/infrastructure/native.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAKH,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AA2C/C;;;GAGG;AACH,wBAAgB,UAAU,IAAI,WAAW,GAAG,IAAI,CAiB/C;AAED;;GAEG;AACH,wBAAgB,iBAAiB,IAAI,OAAO,CAE3C;AAED;;;GAGG;AACH,wBAAgB,uBAAuB,IAAI,MAAM,GAAG,IAAI,CASvD;AAED;;GAEG;AACH,wBAAgB,SAAS,IAAI,WAAW,CAUvC"}
+{"version":3,"file":"native.d.ts","sourceRoot":"","sources":["../../src/infrastructure/native.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAKH,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AA8C/C;;;GAGG;AACH,wBAAgB,UAAU,IAAI,WAAW,GAAG,IAAI,CAiB/C;AAED;;GAEG;AACH,wBAAgB,iBAAiB,IAAI,OAAO,CAE3C;AAED;;;GAGG;AACH,wBAAgB,uBAAuB,IAAI,MAAM,GAAG,IAAI,CAUvD;AAED;;GAEG;AACH,wBAAgB,SAAS,IAAI,WAAW,CAUvC"}

package/dist/infrastructure/native.js

@@ -7,7 +7,8 @@
  */
 import { createRequire } from 'node:module';
 import os from 'node:os';
-import { EngineError } from '../shared/errors.js';
+import { EngineError, toErrorMessage } from '../shared/errors.js';
+import { debug } from './logger.js';
 let _cached; // undefined = not yet tried, null = failed, NativeAddon = module
 let _loadError = null;
 const _require = createRequire(import.meta.url);
@@ -23,7 +24,9 @@ function detectLibc() {
             return 'musl';
         }
     }
-    catch { }
+    catch (e) {
+        debug(`detectLibc: failed to read /lib: ${toErrorMessage(e)}`);
+    }
     return 'gnu';
 }
 /** Map of (platform-arch[-libc]) → npm package name. */
@@ -87,7 +90,8 @@ export function getNativePackageVersion() {
         const pkgJson = _require(`${pkg}/package.json`);
         return pkgJson.version || null;
     }
-    catch {
+    catch (e) {
+        debug(`getNativePackageVersion: failed to read package.json for ${pkg}: ${toErrorMessage(e)}`);
         return null;
     }
 }

package/dist/infrastructure/native.js.map

@@ -1 +1 @@
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package/dist/infrastructure/registry.d.ts.map

@@ -1 +1 @@
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package/dist/infrastructure/registry.js

@@ -2,7 +2,7 @@ import fs from 'node:fs';
 import os from 'node:os';
 import path from 'node:path';
 import { debug, warn } from './logger.js';
-export const REGISTRY_PATH = process.env['CODEGRAPH_REGISTRY_PATH'] || path.join(os.homedir(), '.codegraph', 'registry.json');
+export const REGISTRY_PATH = process.env.CODEGRAPH_REGISTRY_PATH || path.join(os.homedir(), '.codegraph', 'registry.json');
 /** Default TTL: entries not accessed within 30 days are pruned. */
 export const DEFAULT_TTL_DAYS = 30;
 /**

package/dist/infrastructure/registry.js.map

@@ -1 +1 @@
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+{"version":3,"file":"registry.js","sourceRoot":"","sources":["../../src/infrastructure/registry.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,SAAS,CAAC;AACzB,OAAO,EAAE,MAAM,SAAS,CAAC;AACzB,OAAO,IAAI,MAAM,WAAW,CAAC;AAC7B,OAAO,EAAE,KAAK,EAAE,IAAI,EAAE,MAAM,aAAa,CAAC;AAE1C,MAAM,CAAC,MAAM,aAAa,GACxB,OAAO,CAAC,GAAG,CAAC,uBAAuB,IAAI,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,OAAO,EAAE,EAAE,YAAY,EAAE,eAAe,CAAC,CAAC;AAEhG,mEAAmE;AACnE,MAAM,CAAC,MAAM,gBAAgB,GAAG,EAAE,CAAC;AAanC;;;GAGG;AACH,MAAM,UAAU,YAAY,CAAC,eAAuB,aAAa;IAC/D,IAAI,CAAC;QACH,MAAM,GAAG,GAAG,EAAE,CAAC,YAAY,CAAC,YAAY,EAAE,OAAO,CAAC,CAAC;QACnD,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;QAC7B,IAAI,CAAC,IAAI,IAAI,OAAO,IAAI,CAAC,KAAK,KAAK,QAAQ;YAAE,OAAO,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;QAClE,OAAO,IAAgB,CAAC;IAC1B,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;IACvB,CAAC;AACH,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,YAAY,CAAC,QAAkB,EAAE,eAAuB,aAAa;IACnF,MAAM,GAAG,GAAG,IAAI,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC;IACvC,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,GAAG,CAAC;QAAE,EAAE,CAAC,SAAS,CAAC,GAAG,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAEhE,MAAM,GAAG,GAAG,GAAG,YAAY,QAAQ,OAAO,CAAC,GAAG,EAAE,CAAC;IACjD,EAAE,CAAC,aAAa,CAAC,GAAG,EAAE,IAAI,CAAC,SAAS,CAAC,QAAQ,EAAE,IAAI,EAAE,CAAC,CAAC,EAAE,OAAO,CAAC,CAAC;IAClE,EAAE,CAAC,UAAU,CAAC,GAAG,EAAE,YAAY,CAAC,CAAC;AACnC,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,YAAY,CAC1B,OAAe,EACf,IAAa,EACb,eAAuB,aAAa;IAEpC,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;IACtC,MAAM,QAAQ,GAAG,IAAI,IAAI,IAAI,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC;IAChD,MAAM,QAAQ,GAAG,YAAY,CAAC,YAAY,CAAC,CAAC;IAE5C,IAAI,QAAQ,GAAG,QAAQ,CAAC;IAExB,sDAAsD;IACtD,IAAI,CAAC,IAAI,EAAE,CAAC;QACV,MAAM,QAAQ,GAAG,QAAQ,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC;QAC1C,IAAI,QAAQ,IAAI,IAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,IAAI,CAAC,KAAK,OAAO,EAAE,CAAC;YACxD,wEAAwE;YACxE,IAAI,MAAM,GAAG,CAAC,CAAC;YACf,OAAO,QAAQ,CAAC,KAAK,CAAC,GAAG,QAAQ,IAAI,MAAM,EAAE,CAAC,EAAE,CAAC;gBAC/C,MAAM,KAAK,GAAG,QAAQ,CAAC,KAAK,CAAC,GAAG,QAAQ,IAAI,MAAM,EAAE,CAAE,CAAC;gBACvD,IAAI,IAAI,CAAC,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,OAAO,EAAE,CAAC;oBACzC,gEAAgE;oBAChE,QAAQ,GAAG,GAAG,QAAQ,IAAI,MAAM,EAAE,CAAC;oBACnC,MAAM;gBACR,CAAC;gBACD,MAAM,EAAE,CAAC;YACX,CAAC;YACD,IAAI,QAAQ,KAAK,QAAQ,EAAE,CAAC;gBAC1B,QAAQ,GAAG,GAAG,QAAQ,IAAI,MAAM,EAAE,CAAC;YACrC,CAAC;QACH,CAAC;IACH,CAAC;IAED,MAAM,GAAG,GAAG,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE,CAAC;IACrC,QAAQ,CAAC,KAAK,CAAC,QAAQ,CAAC,GAAG;QACzB,IAAI,EAAE,OAAO;QACb,MAAM,EAAE,IAAI,CAAC,IAAI,CAAC,OAAO,EAAE,YAAY,EAAE,UAAU,CAAC;QACpD,OAAO,EAAE,QAAQ,CAAC,KAAK,CAAC,QAAQ,CAAC,EAAE,OAAO,IAAI,GAAG;QACjD,cAAc,EAAE,GAAG;KACpB,CAAC;IAEF,YAAY,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAC;IACrC,KAAK,CAAC,oBAAoB,QAAQ,QAAQ,OAAO,EAAE,CAAC,CAAC;IACrD,OAAO,EAAE,IAAI,EAAE,QAAQ,EAAE,KAAK,EAAE,QAAQ,CAAC,KAAK,CAAC,QAAQ,CAAE,EAAE,CAAC;AAC9D,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,cAAc,CAAC,IAAY,EAAE,eAAuB,aAAa;IAC/E,MAAM,QAAQ,GAAG,YAAY,CAAC,YAAY,CAAC,CAAC;IAC5C,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC;QAAE,OAAO,KAAK,CAAC;IACxC,OAAO,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IAC5B,YAAY,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAC;IACrC,OAAO,IAAI,CAAC;AACd,CAAC;AAUD;;GAEG;AACH,MAAM,UAAU,SAAS,CAAC,eAAuB,aAAa;IAC5D,MAAM,QAAQ,GAAG,YAAY,CAAC,YAAY,CAAC,CAAC;IAC5C,OAAO,MAAM,CAAC,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAC;SAClC,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,CAAC;QACvB,IAAI;QACJ,IAAI,EAAE,KAAK,CAAC,IAAI;QAChB,MAAM,EAAE,KAAK,CAAC,MAAM;QACpB,OAAO,EAAE,KAAK,CAAC,OAAO;QACtB,cAAc,EAAE,KAAK,CAAC,cAAc,IAAI,KAAK,CAAC,OAAO;KACtD,CAAC,CAAC;SACF,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;AAClD,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,iBAAiB,CAC/B,IAAY,EACZ,eAAuB,aAAa;IAEpC,MAAM,QAAQ,GAAG,YAAY,CAAC,YAAY,CAAC,CAAC;IAC5C,MAAM,KAAK,GAAG,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IACnC,IAAI,CAAC,KAAK;QAAE,OAAO,SAAS,CAAC;IAC7B,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,KAAK,CAAC,MAAM,CAAC,EAAE,CAAC;QACjC,IAAI,CAAC,mCAAmC,IAAI,QAAQ,KAAK,CAAC,MAAM,EAAE,CAAC,CAAC;QACpE,OAAO,SAAS,CAAC;IACnB,CAAC;IACD,gDAAgD;IAChD,KAAK,CAAC,cAAc,GAAG,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE,CAAC;IAChD,YAAY,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAC;IACrC,OAAO,KAAK,CAAC,MAAM,CAAC;AACtB,CAAC;AAQD;;;;;;GAMG;AACH,MAAM,UAAU,aAAa,CAC3B,eAAuB,aAAa,EACpC,UAAkB,gBAAgB,EAClC,eAAyB,EAAE,EAC3B,MAAM,GAAG,KAAK;IAEd,MAAM,QAAQ,GAAG,YAAY,CAAC,YAAY,CAAC,CAAC;IAC5C,MAAM,MAAM,GAAkB,EAAE,CAAC;IACjC,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,EAAE,GAAG,OAAO,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,IAAI,CAAC;IAC1D,MAAM,UAAU,GAAG,IAAI,GAAG,CACxB,YAAY,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,OAAO,CAAC,KAAK,QAAQ,IAAI,CAAC,CAAC,IAAI,EAAE,CAAC,MAAM,GAAG,CAAC,CAAC,CACzE,CAAC;IAEF,KAAK,MAAM,CAAC,IAAI,EAAE,KAAK,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE,CAAC;QAC3D,IAAI,UAAU,CAAC,GAAG,CAAC,IAAI,CAAC;YAAE,SAAS;QACnC,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC;YAC/B,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,EAAE,MAAM,EAAE,SAAS,EAAE,CAAC,CAAC;YAC3D,IAAI,CAAC,MAAM;gBAAE,OAAO,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;YACzC,SAAS;QACX,CAAC;QACD,MAAM,UAAU,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,cAAc,IAAI,KAAK,CAAC,OAAO,CAAC,CAAC;QACrE,IAAI,UAAU,GAAG,MAAM,EAAE,CAAC;YA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package/dist/infrastructure/update-check.js

@@ -2,7 +2,7 @@ import fs from 'node:fs';
 import https from 'node:https';
 import os from 'node:os';
 import path from 'node:path';
-const CACHE_PATH = process.env['CODEGRAPH_UPDATE_CACHE_PATH'] ||
+const CACHE_PATH = process.env.CODEGRAPH_UPDATE_CACHE_PATH ||
     path.join(os.homedir(), '.codegraph', 'update-check.json');
 const CACHE_TTL_MS = 24 * 60 * 60 * 1000; // 24 hours
 const FETCH_TIMEOUT_MS = 3000;
@@ -94,9 +94,9 @@ function fetchLatestVersion() {
  */
 export async function checkForUpdates(currentVersion, options = {}) {
     // Suppress in non-interactive / CI contexts
-    if (process.env['CI'])
+    if (process.env.CI)
         return null;
-    if (process.env['NO_UPDATE_CHECK'])
+    if (process.env.NO_UPDATE_CHECK)
         return null;
     if (!process.stderr.isTTY)
         return null;

package/dist/infrastructure/update-check.js.map

@@ -1 +1 @@
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package/dist/mcp/server.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"server.d.ts","sourceRoot":"","sources":["../../src/mcp/server.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAOH,OAAO,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAC;AAI5C,OAAO,KAAK,EAAE,eAAe,EAAE,gBAAgB,EAAE,MAAM,aAAa,CAAC;AAarE,MAAM,WAAW,cAAc;IAC7B,MAAM,EAAE,MAAM,GAAG,SAAS,CAAC;IAE3B,UAAU,IAAI,OAAO,CAAC,GAAG,CAAC,CAAC;IAE3B,WAAW,IAAI,GAAG,CAAC;IACnB,UAAU,EAAE,OAAO,UAAU,CAAC;IAC9B,YAAY,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;IACnC,aAAa,EAAE,MAAM,CAAC;CACvB;AAED,UAAU,wBAAyB,SAAQ,gBAAgB;IACzD,MAAM,CAAC,EAAE,eAAe,CAAC;CAC1B;AAgFD,wBAAsB,cAAc,CAClC,YAAY,CAAC,EAAE,MAAM,EACrB,OAAO,GAAE,wBAA6B,GACrC,OAAO,CAAC,IAAI,CAAC,CA2Hf"}
+{"version":3,"file":"server.d.ts","sourceRoot":"","sources":["../../src/mcp/server.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAOH,OAAO,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAC;AAI5C,OAAO,KAAK,EAAE,eAAe,EAAE,gBAAgB,EAAE,MAAM,aAAa,CAAC;AAYrE,MAAM,WAAW,cAAc;IAC7B,MAAM,EAAE,MAAM,GAAG,SAAS,CAAC;IAC3B,UAAU,IAAI,OAAO,CAAC,GAAG,CAAC,CAAC;IAC3B,WAAW,IAAI,GAAG,CAAC;IACnB,UAAU,EAAE,OAAO,UAAU,CAAC;IAC9B,YAAY,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;IACnC,aAAa,EAAE,MAAM,CAAC;CACvB;AAED,UAAU,wBAAyB,SAAQ,gBAAgB;IACzD,MAAM,CAAC,EAAE,eAAe,CAAC;CAC1B;AAgFD,wBAAsB,cAAc,CAClC,YAAY,CAAC,EAAE,MAAM,EACrB,OAAO,GAAE,wBAA6B,GACrC,OAAO,CAAC,IAAI,CAAC,CAsHf"}

package/dist/mcp/server.js

@@ -19,7 +19,6 @@ import { TOOL_HANDLERS } from './tools/index.js';
  * Because tests use vi.resetModules(), this module-level variable resets
  * on each re-import — but the process-level flag on `process` persists.
  */
-// biome-ignore lint/suspicious/noExplicitAny: MCP SDK server type is lazy-loaded
 let _activeServer = null;
 async function loadMCPSdk() {
     try {
@@ -89,12 +88,10 @@ export async function startMCPServer(customDbPath, options = {}) {
     // are still loading.  These are lazy-loaded on the first tool call
     // and cached for subsequent calls.
     const { getQueries, getDatabase } = createLazyLoaders();
-    // biome-ignore lint/suspicious/noExplicitAny: MCP SDK types are lazy-loaded and untyped
     const server = new Server({ name: 'codegraph', version: PKG_VERSION }, { capabilities: { tools: {} } });
     server.setRequestHandler(ListToolsRequestSchema, async () => ({
         tools: buildToolList(multiRepo),
     }));
-    // biome-ignore lint/suspicious/noExplicitAny: MCP SDK request type is dynamic
     server.setRequestHandler(CallToolRequestSchema, async (request) => {
         const { name, arguments: args } = request.params;
         try {
@@ -126,7 +123,6 @@ export async function startMCPServer(customDbPath, options = {}) {
             return { content: [{ type: 'text', text }], isError: true };
         }
     });
-    // biome-ignore lint/suspicious/noExplicitAny: MCP SDK types are lazy-loaded and untyped
     const transport = new StdioServerTransport();
     // Graceful shutdown — when the client disconnects (e.g. session clear),
     // close the server cleanly so the process exits without error.
@@ -136,10 +132,8 @@ export async function startMCPServer(customDbPath, options = {}) {
     // Register handlers once per process to avoid listener accumulation.
     // Use a process-level flag so it survives vi.resetModules() in tests.
     const g = globalThis;
-    // biome-ignore lint/complexity/useLiteralKeys: bracket notation required by TS noPropertyAccessFromIndexSignature
-    if (!g['__codegraph_shutdown_installed']) {
-        // biome-ignore lint/complexity/useLiteralKeys: bracket notation required by TS noPropertyAccessFromIndexSignature
-        g['__codegraph_shutdown_installed'] = true;
+    if (!g.__codegraph_shutdown_installed) {
+        g.__codegraph_shutdown_installed = true;
         const shutdown = async () => {
             try {
                 await _activeServer?.close();

package/dist/mcp/server.js.map

@@ -1 +1 @@
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package/dist/mcp/tool-registry.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"tool-registry.d.ts","sourceRoot":"","sources":["../../src/mcp/tool-registry.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAKH,UAAU,UAAU;IAClB,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,WAAW,EAAE;QACX,IAAI,EAAE,QAAQ,CAAC;QACf,UAAU,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;QACpC,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAC;KACrB,CAAC;CACH;AAwzBD;;GAEG;AACH,wBAAgB,aAAa,CAAC,SAAS,EAAE,OAAO,GAAG,UAAU,EAAE,CAY9D;AAGD,eAAO,MAAM,KAAK,EAAE,UAAU,EAAwB,CAAC"}
+{"version":3,"file":"tool-registry.d.ts","sourceRoot":"","sources":["../../src/mcp/tool-registry.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAKH,UAAU,UAAU;IAClB,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,WAAW,EAAE;QACX,IAAI,EAAE,QAAQ,CAAC;QACf,UAAU,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;QACpC,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAC;KACrB,CAAC;CACH;AA+zBD;;GAEG;AACH,wBAAgB,aAAa,CAAC,SAAS,EAAE,OAAO,GAAG,UAAU,EAAE,CAY9D;AAGD,eAAO,MAAM,KAAK,EAAE,UAAU,EAAwB,CAAC"}

package/dist/mcp/tool-registry.js

@@ -62,20 +62,25 @@ const BASE_TOOLS = [
     },
     {
         name: 'path',
-        description: 'Find shortest path between two symbols in the dependency graph',
+        description: 'Find shortest path between two symbols (or files with file_mode) in the dependency graph',
         inputSchema: {
             type: 'object',
             properties: {
-                from: { type: 'string', description: 'Source symbol name' },
-                to: { type: 'string', description: 'Target symbol name' },
+                from: { type: 'string', description: 'Source symbol name (or file path with file_mode)' },
+                to: { type: 'string', description: 'Target symbol name (or file path with file_mode)' },
                 depth: { type: 'number', description: 'Max traversal depth (default: 10)' },
                 edge_kinds: {
                     type: 'array',
                     items: { type: 'string', enum: EVERY_EDGE_KIND },
-                    description: 'Edge kinds to follow (default: ["calls"])',
+                    description: 'Edge kinds to follow (default: ["calls"] for symbols, ["imports","imports-type"] for files)',
                 },
                 from_file: { type: 'string', description: 'Disambiguate source by file' },
                 to_file: { type: 'string', description: 'Disambiguate target by file' },
+                file_mode: {
+                    type: 'boolean',
+                    description: 'Treat from/to as file paths and find file-to-file shortest path',
+                    default: false,
+                },
                 no_tests: { type: 'boolean', description: 'Exclude test files', default: false },
             },
             required: ['from', 'to'],