npm - @optave/codegraph - Versions diffs - 3.3.0 → 3.4.0 - Mend

@optave/codegraph 3.3.0 → 3.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1305) hide show

package/README.md +31 -28
package/dist/ast-analysis/engine.d.ts +15 -13
package/dist/ast-analysis/engine.d.ts.map +1 -1
package/dist/ast-analysis/engine.js +40 -26
package/dist/ast-analysis/engine.js.map +1 -1
package/dist/ast-analysis/metrics.d.ts +4 -18
package/dist/ast-analysis/metrics.d.ts.map +1 -1
package/dist/ast-analysis/metrics.js.map +1 -1
package/dist/ast-analysis/rules/csharp.d.ts +6 -23
package/dist/ast-analysis/rules/csharp.d.ts.map +1 -1
package/dist/ast-analysis/rules/csharp.js +0 -3
package/dist/ast-analysis/rules/csharp.js.map +1 -1
package/dist/ast-analysis/rules/go.d.ts +6 -23
package/dist/ast-analysis/rules/go.d.ts.map +1 -1
package/dist/ast-analysis/rules/go.js +0 -3
package/dist/ast-analysis/rules/go.js.map +1 -1
package/dist/ast-analysis/rules/index.d.ts +6 -30
package/dist/ast-analysis/rules/index.d.ts.map +1 -1
package/dist/ast-analysis/rules/index.js +0 -5
package/dist/ast-analysis/rules/index.js.map +1 -1
package/dist/ast-analysis/rules/java.d.ts +6 -23
package/dist/ast-analysis/rules/java.d.ts.map +1 -1
package/dist/ast-analysis/rules/java.js +0 -3
package/dist/ast-analysis/rules/java.js.map +1 -1
package/dist/ast-analysis/rules/javascript.d.ts +6 -30
package/dist/ast-analysis/rules/javascript.d.ts.map +1 -1
package/dist/ast-analysis/rules/javascript.js +0 -5
package/dist/ast-analysis/rules/javascript.js.map +1 -1
package/dist/ast-analysis/rules/php.d.ts +6 -23
package/dist/ast-analysis/rules/php.d.ts.map +1 -1
package/dist/ast-analysis/rules/php.js +0 -3
package/dist/ast-analysis/rules/php.js.map +1 -1
package/dist/ast-analysis/rules/python.d.ts +6 -23
package/dist/ast-analysis/rules/python.d.ts.map +1 -1
package/dist/ast-analysis/rules/python.js +0 -3
package/dist/ast-analysis/rules/python.js.map +1 -1
package/dist/ast-analysis/rules/ruby.d.ts +6 -23
package/dist/ast-analysis/rules/ruby.d.ts.map +1 -1
package/dist/ast-analysis/rules/ruby.js +0 -3
package/dist/ast-analysis/rules/ruby.js.map +1 -1
package/dist/ast-analysis/rules/rust.d.ts +6 -23
package/dist/ast-analysis/rules/rust.d.ts.map +1 -1
package/dist/ast-analysis/rules/rust.js +0 -3
package/dist/ast-analysis/rules/rust.js.map +1 -1
package/dist/ast-analysis/shared.d.ts +11 -105
package/dist/ast-analysis/shared.d.ts.map +1 -1
package/dist/ast-analysis/shared.js +1 -27
package/dist/ast-analysis/shared.js.map +1 -1
package/dist/ast-analysis/visitor-utils.d.ts +36 -11
package/dist/ast-analysis/visitor-utils.d.ts.map +1 -1
package/dist/ast-analysis/visitor-utils.js.map +1 -1
package/dist/ast-analysis/visitor.d.ts +2 -94
package/dist/ast-analysis/visitor.d.ts.map +1 -1
package/dist/ast-analysis/visitor.js +0 -16
package/dist/ast-analysis/visitor.js.map +1 -1
package/dist/ast-analysis/visitors/ast-store-visitor.d.ts +2 -10
package/dist/ast-analysis/visitors/ast-store-visitor.d.ts.map +1 -1
package/dist/ast-analysis/visitors/ast-store-visitor.js +10 -20
package/dist/ast-analysis/visitors/ast-store-visitor.js.map +1 -1
package/dist/ast-analysis/visitors/cfg-visitor.d.ts +4 -7
package/dist/ast-analysis/visitors/cfg-visitor.d.ts.map +1 -1
package/dist/ast-analysis/visitors/cfg-visitor.js +20 -65
package/dist/ast-analysis/visitors/cfg-visitor.js.map +1 -1
package/dist/ast-analysis/visitors/complexity-visitor.d.ts +6 -15
package/dist/ast-analysis/visitors/complexity-visitor.d.ts.map +1 -1
package/dist/ast-analysis/visitors/complexity-visitor.js +6 -41
package/dist/ast-analysis/visitors/complexity-visitor.js.map +1 -1
package/dist/ast-analysis/visitors/dataflow-visitor.d.ts +4 -7
package/dist/ast-analysis/visitors/dataflow-visitor.d.ts.map +1 -1
package/dist/ast-analysis/visitors/dataflow-visitor.js +19 -33
package/dist/ast-analysis/visitors/dataflow-visitor.js.map +1 -1
package/dist/cli/commands/ast.d.ts +2 -8
package/dist/cli/commands/ast.d.ts.map +1 -1
package/dist/cli/commands/ast.js +1 -1
package/dist/cli/commands/ast.js.map +1 -1
package/dist/cli/commands/audit.d.ts +2 -8
package/dist/cli/commands/audit.d.ts.map +1 -1
package/dist/cli/commands/audit.js.map +1 -1
package/dist/cli/commands/batch.d.ts +2 -8
package/dist/cli/commands/batch.d.ts.map +1 -1
package/dist/cli/commands/batch.js +9 -3
package/dist/cli/commands/batch.js.map +1 -1
package/dist/cli/commands/branch-compare.d.ts +2 -6
package/dist/cli/commands/branch-compare.d.ts.map +1 -1
package/dist/cli/commands/branch-compare.js +1 -1
package/dist/cli/commands/branch-compare.js.map +1 -1
package/dist/cli/commands/brief.d.ts +2 -6
package/dist/cli/commands/brief.d.ts.map +1 -1
package/dist/cli/commands/brief.js.map +1 -1
package/dist/cli/commands/build.d.ts +2 -6
package/dist/cli/commands/build.d.ts.map +1 -1
package/dist/cli/commands/build.js +2 -2
package/dist/cli/commands/build.js.map +1 -1
package/dist/cli/commands/cfg.d.ts +2 -9
package/dist/cli/commands/cfg.d.ts.map +1 -1
package/dist/cli/commands/cfg.js.map +1 -1
package/dist/cli/commands/check.d.ts +2 -7
package/dist/cli/commands/check.d.ts.map +1 -1
package/dist/cli/commands/check.js.map +1 -1
package/dist/cli/commands/children.d.ts +2 -8
package/dist/cli/commands/children.d.ts.map +1 -1
package/dist/cli/commands/children.js.map +1 -1
package/dist/cli/commands/co-change.d.ts +2 -6
package/dist/cli/commands/co-change.d.ts.map +1 -1
package/dist/cli/commands/co-change.js +9 -5
package/dist/cli/commands/co-change.js.map +1 -1
package/dist/cli/commands/communities.d.ts +2 -7
package/dist/cli/commands/communities.d.ts.map +1 -1
package/dist/cli/commands/communities.js.map +1 -1
package/dist/cli/commands/complexity.d.ts +2 -8
package/dist/cli/commands/complexity.d.ts.map +1 -1
package/dist/cli/commands/complexity.js.map +1 -1
package/dist/cli/commands/context.d.ts +2 -9
package/dist/cli/commands/context.d.ts.map +1 -1
package/dist/cli/commands/context.js.map +1 -1
package/dist/cli/commands/cycles.d.ts +2 -6
package/dist/cli/commands/cycles.d.ts.map +1 -1
package/dist/cli/commands/cycles.js.map +1 -1
package/dist/cli/commands/dataflow.d.ts +2 -9
package/dist/cli/commands/dataflow.d.ts.map +1 -1
package/dist/cli/commands/dataflow.js.map +1 -1
package/dist/cli/commands/deps.d.ts +2 -7
package/dist/cli/commands/deps.d.ts.map +1 -1
package/dist/cli/commands/deps.js.map +1 -1
package/dist/cli/commands/diff-impact.d.ts +2 -6
package/dist/cli/commands/diff-impact.d.ts.map +1 -1
package/dist/cli/commands/diff-impact.js.map +1 -1
package/dist/cli/commands/embed.d.ts +2 -7
package/dist/cli/commands/embed.d.ts.map +1 -1
package/dist/cli/commands/embed.js +2 -1
package/dist/cli/commands/embed.js.map +1 -1
package/dist/cli/commands/export.d.ts +2 -6
package/dist/cli/commands/export.d.ts.map +1 -1
package/dist/cli/commands/export.js.map +1 -1
package/dist/cli/commands/exports.d.ts +2 -7
package/dist/cli/commands/exports.d.ts.map +1 -1
package/dist/cli/commands/exports.js.map +1 -1
package/dist/cli/commands/flow.d.ts +2 -9
package/dist/cli/commands/flow.d.ts.map +1 -1
package/dist/cli/commands/flow.js.map +1 -1
package/dist/cli/commands/fn-impact.d.ts +2 -9
package/dist/cli/commands/fn-impact.d.ts.map +1 -1
package/dist/cli/commands/fn-impact.js.map +1 -1
package/dist/cli/commands/impact.d.ts +2 -6
package/dist/cli/commands/impact.d.ts.map +1 -1
package/dist/cli/commands/impact.js.map +1 -1
package/dist/cli/commands/implementations.d.ts +2 -9
package/dist/cli/commands/implementations.d.ts.map +1 -1
package/dist/cli/commands/implementations.js.map +1 -1
package/dist/cli/commands/info.d.ts +2 -5
package/dist/cli/commands/info.d.ts.map +1 -1
package/dist/cli/commands/info.js +3 -2
package/dist/cli/commands/info.js.map +1 -1
package/dist/cli/commands/interfaces.d.ts +2 -9
package/dist/cli/commands/interfaces.d.ts.map +1 -1
package/dist/cli/commands/interfaces.js.map +1 -1
package/dist/cli/commands/map.d.ts +2 -6
package/dist/cli/commands/map.d.ts.map +1 -1
package/dist/cli/commands/map.js.map +1 -1
package/dist/cli/commands/mcp.d.ts +2 -6
package/dist/cli/commands/mcp.d.ts.map +1 -1
package/dist/cli/commands/mcp.js +4 -5
package/dist/cli/commands/mcp.js.map +1 -1
package/dist/cli/commands/models.d.ts +2 -5
package/dist/cli/commands/models.d.ts.map +1 -1
package/dist/cli/commands/models.js +5 -3
package/dist/cli/commands/models.js.map +1 -1
package/dist/cli/commands/owners.d.ts +2 -7
package/dist/cli/commands/owners.d.ts.map +1 -1
package/dist/cli/commands/owners.js.map +1 -1
package/dist/cli/commands/path.d.ts +2 -7
package/dist/cli/commands/path.d.ts.map +1 -1
package/dist/cli/commands/path.js.map +1 -1
package/dist/cli/commands/plot.d.ts +2 -6
package/dist/cli/commands/plot.d.ts.map +1 -1
package/dist/cli/commands/plot.js +3 -1
package/dist/cli/commands/plot.js.map +1 -1
package/dist/cli/commands/query.d.ts +2 -9
package/dist/cli/commands/query.d.ts.map +1 -1
package/dist/cli/commands/query.js.map +1 -1
package/dist/cli/commands/registry.d.ts +2 -15
package/dist/cli/commands/registry.d.ts.map +1 -1
package/dist/cli/commands/registry.js.map +1 -1
package/dist/cli/commands/roles.d.ts +2 -8
package/dist/cli/commands/roles.d.ts.map +1 -1
package/dist/cli/commands/roles.js.map +1 -1
package/dist/cli/commands/search.d.ts +2 -8
package/dist/cli/commands/search.d.ts.map +1 -1
package/dist/cli/commands/search.js +1 -5
package/dist/cli/commands/search.js.map +1 -1
package/dist/cli/commands/sequence.d.ts +2 -9
package/dist/cli/commands/sequence.d.ts.map +1 -1
package/dist/cli/commands/sequence.js.map +1 -1
package/dist/cli/commands/snapshot.d.ts +2 -10
package/dist/cli/commands/snapshot.d.ts.map +1 -1
package/dist/cli/commands/snapshot.js.map +1 -1
package/dist/cli/commands/stats.d.ts +2 -6
package/dist/cli/commands/stats.d.ts.map +1 -1
package/dist/cli/commands/stats.js.map +1 -1
package/dist/cli/commands/structure.d.ts +2 -6
package/dist/cli/commands/structure.d.ts.map +1 -1
package/dist/cli/commands/structure.js.map +1 -1
package/dist/cli/commands/triage.d.ts +2 -7
package/dist/cli/commands/triage.d.ts.map +1 -1
package/dist/cli/commands/triage.js.map +1 -1
package/dist/cli/commands/watch.d.ts +2 -5
package/dist/cli/commands/watch.d.ts.map +1 -1
package/dist/cli/commands/watch.js +1 -1
package/dist/cli/commands/watch.js.map +1 -1
package/dist/cli/commands/where.d.ts +2 -8
package/dist/cli/commands/where.d.ts.map +1 -1
package/dist/cli/commands/where.js +1 -1
package/dist/cli/commands/where.js.map +1 -1
package/dist/cli/index.d.ts +8 -17
package/dist/cli/index.d.ts.map +1 -1
package/dist/cli/index.js +27 -7
package/dist/cli/index.js.map +1 -1
package/dist/cli/shared/open-graph.d.ts +4 -7
package/dist/cli/shared/open-graph.d.ts.map +1 -1
package/dist/cli/shared/open-graph.js +0 -4
package/dist/cli/shared/open-graph.js.map +1 -1
package/dist/cli/shared/options.d.ts +8 -15
package/dist/cli/shared/options.d.ts.map +1 -1
package/dist/cli/shared/options.js +0 -2
package/dist/cli/shared/options.js.map +1 -1
package/dist/cli/shared/output.d.ts +1 -1
package/dist/cli/shared/output.d.ts.map +1 -1
package/dist/cli/shared/output.js.map +1 -1
package/dist/cli/types.d.ts +30 -0
package/dist/cli/types.d.ts.map +1 -0
package/dist/cli/types.js +2 -0
package/dist/cli/types.js.map +1 -0
package/dist/cli.d.ts.map +1 -1
package/dist/cli.js +2 -1
package/dist/cli.js.map +1 -1
package/dist/db/connection.d.ts +15 -19
package/dist/db/connection.d.ts.map +1 -1
package/dist/db/connection.js +2 -10
package/dist/db/connection.js.map +1 -1
package/dist/db/index.d.ts +5 -4
package/dist/db/index.d.ts.map +1 -1
package/dist/db/index.js +1 -1
package/dist/db/index.js.map +1 -1
package/dist/db/migrations.d.ts +8 -5
package/dist/db/migrations.d.ts.map +1 -1
package/dist/db/migrations.js +6 -3
package/dist/db/migrations.js.map +1 -1
package/dist/db/query-builder.d.ts +28 -46
package/dist/db/query-builder.d.ts.map +1 -1
package/dist/db/query-builder.js +2 -21
package/dist/db/query-builder.js.map +1 -1
package/dist/db/repository/base.d.ts +38 -101
package/dist/db/repository/base.d.ts.map +1 -1
package/dist/db/repository/base.js +6 -38
package/dist/db/repository/base.js.map +1 -1
package/dist/db/repository/build-stmts.d.ts +7 -16
package/dist/db/repository/build-stmts.d.ts.map +1 -1
package/dist/db/repository/build-stmts.js +0 -17
package/dist/db/repository/build-stmts.js.map +1 -1
package/dist/db/repository/cached-stmt.d.ts +2 -6
package/dist/db/repository/cached-stmt.d.ts.map +1 -1
package/dist/db/repository/cached-stmt.js +0 -5
package/dist/db/repository/cached-stmt.js.map +1 -1
package/dist/db/repository/cfg.d.ts +21 -14
package/dist/db/repository/cfg.d.ts.map +1 -1
package/dist/db/repository/cfg.js +0 -11
package/dist/db/repository/cfg.js.map +1 -1
package/dist/db/repository/cochange.d.ts +4 -10
package/dist/db/repository/cochange.d.ts.map +1 -1
package/dist/db/repository/cochange.js +0 -7
package/dist/db/repository/cochange.js.map +1 -1
package/dist/db/repository/complexity.d.ts +2 -10
package/dist/db/repository/complexity.d.ts.map +1 -1
package/dist/db/repository/complexity.js +0 -3
package/dist/db/repository/complexity.js.map +1 -1
package/dist/db/repository/dataflow.d.ts +2 -3
package/dist/db/repository/dataflow.d.ts.map +1 -1
package/dist/db/repository/dataflow.js +2 -3
package/dist/db/repository/dataflow.js.map +1 -1
package/dist/db/repository/edges.d.ts +25 -132
package/dist/db/repository/edges.d.ts.map +1 -1
package/dist/db/repository/edges.js +2 -58
package/dist/db/repository/edges.js.map +1 -1
package/dist/db/repository/embeddings.d.ts +4 -10
package/dist/db/repository/embeddings.d.ts.map +1 -1
package/dist/db/repository/embeddings.js +1 -8
package/dist/db/repository/embeddings.js.map +1 -1
package/dist/db/repository/graph-read.d.ts +5 -28
package/dist/db/repository/graph-read.d.ts.map +1 -1
package/dist/db/repository/graph-read.js +0 -8
package/dist/db/repository/graph-read.js.map +1 -1
package/dist/db/repository/in-memory-repository.d.ts +73 -141
package/dist/db/repository/in-memory-repository.d.ts.map +1 -1
package/dist/db/repository/in-memory-repository.js +28 -20
package/dist/db/repository/in-memory-repository.js.map +1 -1
package/dist/db/repository/index.d.ts +13 -13
package/dist/db/repository/index.d.ts.map +1 -1
package/dist/db/repository/index.js +1 -1
package/dist/db/repository/index.js.map +1 -1
package/dist/db/repository/nodes.d.ts +40 -105
package/dist/db/repository/nodes.d.ts.map +1 -1
package/dist/db/repository/nodes.js +29 -74
package/dist/db/repository/nodes.js.map +1 -1
package/dist/db/repository/sqlite-repository.d.ts +48 -93
package/dist/db/repository/sqlite-repository.d.ts.map +1 -1
package/dist/db/repository/sqlite-repository.js +7 -2
package/dist/db/repository/sqlite-repository.js.map +1 -1
package/dist/domain/analysis/brief.d.ts +16 -7
package/dist/domain/analysis/brief.d.ts.map +1 -1
package/dist/domain/analysis/brief.js +3 -8
package/dist/domain/analysis/brief.js.map +1 -1
package/dist/domain/analysis/context.d.ts +240 -2
package/dist/domain/analysis/context.d.ts.map +1 -1
package/dist/domain/analysis/context.js +39 -32
package/dist/domain/analysis/context.js.map +1 -1
package/dist/domain/analysis/dependencies.d.ts +113 -37
package/dist/domain/analysis/dependencies.d.ts.map +1 -1
package/dist/domain/analysis/dependencies.js +20 -27
package/dist/domain/analysis/dependencies.js.map +1 -1
package/dist/domain/analysis/exports.d.ts +7 -1
package/dist/domain/analysis/exports.d.ts.map +1 -1
package/dist/domain/analysis/exports.js +48 -33
package/dist/domain/analysis/exports.js.map +1 -1
package/dist/domain/analysis/impact.d.ts +128 -16
package/dist/domain/analysis/impact.d.ts.map +1 -1
package/dist/domain/analysis/impact.js +31 -56
package/dist/domain/analysis/impact.js.map +1 -1
package/dist/domain/analysis/implementations.d.ts +28 -28
package/dist/domain/analysis/implementations.d.ts.map +1 -1
package/dist/domain/analysis/implementations.js +0 -10
package/dist/domain/analysis/implementations.js.map +1 -1
package/dist/domain/analysis/module-map.d.ts +44 -24
package/dist/domain/analysis/module-map.d.ts.map +1 -1
package/dist/domain/analysis/module-map.js +19 -7
package/dist/domain/analysis/module-map.js.map +1 -1
package/dist/domain/analysis/roles.d.ts +13 -1
package/dist/domain/analysis/roles.d.ts.map +1 -1
package/dist/domain/analysis/roles.js +10 -2
package/dist/domain/analysis/roles.js.map +1 -1
package/dist/domain/analysis/symbol-lookup.d.ts +120 -7
package/dist/domain/analysis/symbol-lookup.d.ts.map +1 -1
package/dist/domain/analysis/symbol-lookup.js +11 -7
package/dist/domain/analysis/symbol-lookup.js.map +1 -1
package/dist/domain/graph/builder/context.d.ts +32 -67
package/dist/domain/graph/builder/context.d.ts.map +1 -1
package/dist/domain/graph/builder/context.js +0 -36
package/dist/domain/graph/builder/context.js.map +1 -1
package/dist/domain/graph/builder/helpers.d.ts +14 -14
package/dist/domain/graph/builder/helpers.d.ts.map +1 -1
package/dist/domain/graph/builder/helpers.js +62 -23
package/dist/domain/graph/builder/helpers.js.map +1 -1
package/dist/domain/graph/builder/incremental.d.ts +50 -13
package/dist/domain/graph/builder/incremental.d.ts.map +1 -1
package/dist/domain/graph/builder/incremental.js +246 -20
package/dist/domain/graph/builder/incremental.js.map +1 -1
package/dist/domain/graph/builder/pipeline.d.ts +2 -7
package/dist/domain/graph/builder/pipeline.d.ts.map +1 -1
package/dist/domain/graph/builder/pipeline.js +21 -19
package/dist/domain/graph/builder/pipeline.js.map +1 -1
package/dist/domain/graph/builder/stages/build-edges.d.ts +2 -4
package/dist/domain/graph/builder/stages/build-edges.d.ts.map +1 -1
package/dist/domain/graph/builder/stages/build-edges.js +6 -12
package/dist/domain/graph/builder/stages/build-edges.js.map +1 -1
package/dist/domain/graph/builder/stages/build-structure.d.ts +2 -4
package/dist/domain/graph/builder/stages/build-structure.d.ts.map +1 -1
package/dist/domain/graph/builder/stages/build-structure.js +8 -8
package/dist/domain/graph/builder/stages/build-structure.js.map +1 -1
package/dist/domain/graph/builder/stages/collect-files.d.ts +2 -4
package/dist/domain/graph/builder/stages/collect-files.d.ts.map +1 -1
package/dist/domain/graph/builder/stages/collect-files.js +0 -3
package/dist/domain/graph/builder/stages/collect-files.js.map +1 -1
package/dist/domain/graph/builder/stages/detect-changes.d.ts +2 -4
package/dist/domain/graph/builder/stages/detect-changes.d.ts.map +1 -1
package/dist/domain/graph/builder/stages/detect-changes.js +38 -45
package/dist/domain/graph/builder/stages/detect-changes.js.map +1 -1
package/dist/domain/graph/builder/stages/finalize.d.ts +2 -4
package/dist/domain/graph/builder/stages/finalize.d.ts.map +1 -1
package/dist/domain/graph/builder/stages/finalize.js +45 -26
package/dist/domain/graph/builder/stages/finalize.js.map +1 -1
package/dist/domain/graph/builder/stages/insert-nodes.d.ts +2 -4
package/dist/domain/graph/builder/stages/insert-nodes.d.ts.map +1 -1
package/dist/domain/graph/builder/stages/insert-nodes.js +57 -33
package/dist/domain/graph/builder/stages/insert-nodes.js.map +1 -1
package/dist/domain/graph/builder/stages/parse-files.d.ts +2 -4
package/dist/domain/graph/builder/stages/parse-files.d.ts.map +1 -1
package/dist/domain/graph/builder/stages/parse-files.js +0 -3
package/dist/domain/graph/builder/stages/parse-files.js.map +1 -1
package/dist/domain/graph/builder/stages/resolve-imports.d.ts +5 -17
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package/src/ast-analysis/{engine.js → engine.ts} +151 -64
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package/src/ast-analysis/rules/{index.js → index.ts} +14 -14
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package/src/ast-analysis/rules/{javascript.js → javascript.ts} +11 -11
package/src/ast-analysis/rules/{php.js → php.ts} +11 -9
package/src/ast-analysis/rules/{python.js → python.ts} +11 -9
package/src/ast-analysis/rules/{ruby.js → ruby.ts} +11 -9
package/src/ast-analysis/rules/{rust.js → rust.ts} +11 -9
package/src/ast-analysis/{shared.js → shared.ts} +44 -43
package/src/ast-analysis/{visitor-utils.js → visitor-utils.ts} +49 -12
package/src/ast-analysis/{visitor.js → visitor.ts} +29 -31
package/src/ast-analysis/visitors/{ast-store-visitor.js → ast-store-visitor.ts} +44 -36
package/src/ast-analysis/visitors/{cfg-visitor.js → cfg-visitor.ts} +251 -155
package/src/ast-analysis/visitors/{complexity-visitor.js → complexity-visitor.ts} +74 -61
package/src/ast-analysis/visitors/{dataflow-visitor.js → dataflow-visitor.ts} +149 -63
package/src/cli/commands/{ast.js → ast.ts} +4 -3
package/src/cli/commands/{audit.js → audit.ts} +7 -6
package/src/cli/commands/{batch.js → batch.ts} +30 -14
package/src/cli/commands/{branch-compare.js → branch-compare.ts} +6 -4
package/src/cli/commands/{brief.js → brief.ts} +3 -2
package/src/cli/commands/{build.js → build.ts} +10 -8
package/src/cli/commands/{cfg.js → cfg.ts} +4 -3
package/src/cli/commands/{check.js → check.ts} +7 -6
package/src/cli/commands/{children.js → children.ts} +4 -3
package/src/cli/commands/{co-change.js → co-change.ts} +17 -12
package/src/cli/commands/{communities.js → communities.ts} +4 -2
package/src/cli/commands/{complexity.js → complexity.ts} +5 -4
package/src/cli/commands/{context.js → context.ts} +5 -4
package/src/cli/commands/{cycles.js → cycles.ts} +4 -3
package/src/cli/commands/{dataflow.js → dataflow.ts} +5 -4
package/src/cli/commands/{deps.js → deps.ts} +4 -3
package/src/cli/commands/{diff-impact.js → diff-impact.ts} +3 -2
package/src/cli/commands/{embed.js → embed.ts} +6 -4
package/src/cli/commands/{export.js → export.ts} +8 -7
package/src/cli/commands/{exports.js → exports.ts} +3 -2
package/src/cli/commands/{flow.js → flow.ts} +4 -3
package/src/cli/commands/{fn-impact.js → fn-impact.ts} +5 -4
package/src/cli/commands/{impact.js → impact.ts} +3 -2
package/src/cli/commands/{implementations.js → implementations.ts} +4 -3
package/src/cli/commands/{info.js → info.ts} +7 -4
package/src/cli/commands/{interfaces.js → interfaces.ts} +4 -3
package/src/cli/commands/{map.js → map.ts} +3 -2
package/src/cli/commands/{mcp.js → mcp.ts} +8 -7
package/src/cli/commands/models.ts +29 -0
package/src/cli/commands/{owners.js → owners.ts} +3 -2
package/src/cli/commands/{path.js → path.ts} +6 -5
package/src/cli/commands/{plot.js → plot.ts} +35 -14
package/src/cli/commands/{query.js → query.ts} +8 -7
package/src/cli/commands/{registry.js → registry.ts} +12 -6
package/src/cli/commands/{roles.js → roles.ts} +3 -2
package/src/cli/commands/{search.js → search.ts} +12 -15
package/src/cli/commands/{sequence.js → sequence.ts} +5 -4
package/src/cli/commands/{snapshot.js → snapshot.ts} +5 -4
package/src/cli/commands/{stats.js → stats.ts} +2 -1
package/src/cli/commands/{structure.js → structure.ts} +4 -2
package/src/cli/commands/{triage.js → triage.ts} +14 -13
package/src/cli/commands/{watch.js → watch.ts} +3 -2
package/src/cli/commands/{where.js → where.ts} +3 -2
package/src/cli/{index.js → index.ts} +40 -15
package/src/cli/shared/{open-graph.js → open-graph.ts} +5 -5
package/src/cli/shared/{options.js → options.ts} +6 -6
package/src/cli/types.ts +33 -0
package/src/{cli.js → cli.ts} +3 -2
package/src/db/{connection.js → connection.ts} +46 -37
package/src/db/{index.js → index.ts} +4 -0
package/src/db/{migrations.js → migrations.ts} +33 -11
package/src/db/{query-builder.js → query-builder.ts} +50 -65
package/src/db/repository/base.ts +192 -0
package/src/db/repository/{build-stmts.js → build-stmts.ts} +28 -22
package/src/db/repository/{cached-stmt.js → cached-stmt.ts} +8 -7
package/src/db/repository/{cfg.js → cfg.ts} +27 -18
package/src/db/repository/{cochange.js → cochange.ts} +8 -14
package/src/db/repository/{complexity.js → complexity.ts} +6 -5
package/src/db/repository/dataflow.ts +19 -0
package/src/db/repository/{edges.js → edges.ts} +57 -95
package/src/db/repository/{embeddings.js → embeddings.ts} +10 -14
package/src/db/repository/{graph-read.js → graph-read.ts} +17 -17
package/src/db/repository/{in-memory-repository.js → in-memory-repository.ts} +155 -93
package/src/db/repository/{index.js → index.ts} +2 -0
package/src/db/repository/{nodes.js → nodes.ts} +120 -106
package/src/db/repository/{sqlite-repository.js → sqlite-repository.ts} +71 -42
package/src/domain/analysis/{brief.js → brief.ts} +34 -19
package/src/domain/analysis/{context.js → context.ts} +179 -79
package/src/domain/analysis/{dependencies.js → dependencies.ts} +149 -61
package/src/domain/analysis/{exports.js → exports.ts} +101 -54
package/src/domain/analysis/{impact.js → impact.ts} +193 -131
package/src/domain/analysis/{implementations.js → implementations.ts} +13 -14
package/src/domain/analysis/{module-map.js → module-map.ts} +128 -61
package/src/domain/analysis/{roles.js → roles.ts} +24 -6
package/src/domain/analysis/{symbol-lookup.js → symbol-lookup.ts} +78 -34
package/src/domain/graph/builder/context.ts +81 -0
package/src/domain/graph/builder/helpers.ts +289 -0
package/src/domain/graph/builder/incremental.ts +618 -0
package/src/domain/graph/builder/{pipeline.js → pipeline.ts} +33 -27
package/src/domain/graph/builder/stages/{build-edges.js → build-edges.ts} +174 -56
package/src/domain/graph/builder/stages/{build-structure.js → build-structure.ts} +34 -17
package/src/domain/graph/builder/stages/{collect-files.js → collect-files.ts} +6 -8
package/src/domain/graph/builder/stages/{detect-changes.js → detect-changes.ts} +156 -123
package/src/domain/graph/builder/stages/{finalize.js → finalize.ts} +79 -41
package/src/domain/graph/builder/stages/{insert-nodes.js → insert-nodes.ts} +102 -47
package/src/domain/graph/builder/stages/{parse-files.js → parse-files.ts} +2 -4
package/src/domain/graph/builder/stages/{resolve-imports.js → resolve-imports.ts} +26 -39
package/src/domain/graph/builder/stages/{run-analyses.js → run-analyses.ts} +10 -7
package/src/domain/graph/{change-journal.js → change-journal.ts} +48 -37
package/src/domain/graph/cycles.ts +66 -0
package/src/domain/graph/{journal.js → journal.ts} +22 -26
package/src/domain/graph/{resolve.js → resolve.ts} +125 -35
package/src/domain/graph/{watcher.js → watcher.ts} +45 -19
package/src/domain/{parser.js → parser.ts} +185 -102
package/src/domain/{queries.js → queries.ts} +1 -1
package/src/domain/search/{generator.js → generator.ts} +28 -21
package/src/domain/search/{index.js → index.ts} +2 -0
package/src/domain/search/{models.js → models.ts} +62 -38
package/src/domain/search/search/{cli-formatter.js → cli-formatter.ts} +22 -21
package/src/domain/search/search/{filters.js → filters.ts} +7 -19
package/src/domain/search/search/{hybrid.js → hybrid.ts} +69 -25
package/src/domain/search/search/{keyword.js → keyword.ts} +42 -16
package/src/domain/search/search/{prepare.js → prepare.ts} +34 -13
package/src/domain/search/search/{semantic.js → semantic.ts} +73 -37
package/src/domain/search/stores/{fts5.js → fts5.ts} +8 -8
package/src/domain/search/stores/sqlite-blob.ts +15 -0
package/src/domain/search/strategies/{source.js → source.ts} +6 -1
package/src/domain/search/strategies/{structured.js → structured.ts} +12 -7
package/src/domain/search/strategies/{text-utils.js → text-utils.ts} +9 -11
package/src/extractors/{csharp.js → csharp.ts} +71 -42
package/src/extractors/{go.js → go.ts} +105 -30
package/src/extractors/{hcl.js → hcl.ts} +52 -27
package/src/extractors/{helpers.js → helpers.ts} +20 -15
package/src/extractors/{java.js → java.ts} +43 -24
package/src/extractors/{javascript.js → javascript.ts} +165 -133
package/src/extractors/{php.js → php.ts} +45 -32
package/src/extractors/{python.js → python.ts} +63 -36
package/src/extractors/{ruby.js → ruby.ts} +40 -25
package/src/extractors/{rust.js → rust.ts} +41 -31
package/src/features/{ast.js → ast.ts} +117 -72
package/src/features/{audit.js → audit.ts} +173 -54
package/src/features/batch.ts +182 -0
package/src/features/{boundaries.js → boundaries.ts} +101 -116
package/src/features/{branch-compare.js → branch-compare.ts} +153 -81
package/src/features/{cfg.js → cfg.ts} +230 -88
package/src/features/{check.js → check.ts} +143 -70
package/src/features/{cochange.js → cochange.ts} +117 -97
package/src/features/{communities.js → communities.ts} +85 -57
package/src/features/{complexity.js → complexity.ts} +256 -156
package/src/features/{dataflow.js → dataflow.ts} +242 -143
package/src/features/{export.js → export.ts} +164 -52
package/src/features/{flow.js → flow.ts} +63 -45
package/src/features/{graph-enrichment.js → graph-enrichment.ts} +138 -49
package/src/features/{manifesto.js → manifesto.ts} +138 -77
package/src/features/{owners.js → owners.ts} +88 -73
package/src/features/{sequence.js → sequence.ts} +114 -65
package/src/features/shared/{find-nodes.js → find-nodes.ts} +10 -13
package/src/features/{snapshot.js → snapshot.ts} +28 -47
package/src/features/{structure.js → structure.ts} +309 -130
package/src/features/{triage.js → triage.ts} +80 -42
package/src/graph/algorithms/{bfs.js → bfs.ts} +18 -10
package/src/graph/algorithms/{centrality.js → centrality.ts} +9 -5
package/src/graph/algorithms/{index.js → index.ts} +1 -0
package/src/graph/algorithms/leiden/LICENSE +24 -0
package/src/graph/algorithms/leiden/adapter.ts +204 -0
package/src/graph/algorithms/leiden/cpm.ts +77 -0
package/src/graph/algorithms/leiden/index.ts +185 -0
package/src/graph/algorithms/leiden/modularity.ts +122 -0
package/src/graph/algorithms/leiden/optimiser.ts +598 -0
package/src/graph/algorithms/leiden/partition.ts +479 -0
package/src/graph/algorithms/leiden/rng.ts +20 -0
package/src/graph/algorithms/louvain.ts +47 -0
package/src/graph/algorithms/{shortest-path.js → shortest-path.ts} +9 -10
package/src/graph/algorithms/{tarjan.js → tarjan.ts} +15 -14
package/src/graph/builders/{dependency.js → dependency.ts} +43 -17
package/src/graph/builders/structure.ts +58 -0
package/src/graph/builders/temporal.ts +51 -0
package/src/graph/classifiers/{risk.js → risk.ts} +52 -22
package/src/graph/classifiers/{roles.js → roles.ts} +32 -16
package/src/graph/{model.js → model.ts} +49 -58
package/src/index.cjs +1 -1
package/src/infrastructure/{config.js → config.ts} +102 -54
package/src/infrastructure/{logger.js → logger.ts} +6 -6
package/src/infrastructure/{native.js → native.ts} +16 -15
package/src/infrastructure/{registry.js → registry.ts} +48 -16
package/src/infrastructure/{test-filter.js → test-filter.ts} +1 -1
package/src/infrastructure/{update-check.js → update-check.ts} +30 -16
package/src/mcp/{middleware.js → middleware.ts} +6 -12
package/src/mcp/server.ts +249 -0
package/src/mcp/{tool-registry.js → tool-registry.ts} +16 -9
package/src/mcp/tools/{ast-query.js → ast-query.ts} +12 -1
package/src/mcp/tools/{audit.js → audit.ts} +14 -2
package/src/mcp/tools/batch-query.ts +22 -0
package/src/mcp/tools/{branch-compare.js → branch-compare.ts} +11 -1
package/src/mcp/tools/brief.ts +15 -0
package/src/mcp/tools/{cfg.js → cfg.ts} +13 -2
package/src/mcp/tools/{check.js → check.ts} +20 -3
package/src/mcp/tools/{co-changes.js → co-changes.ts} +10 -1
package/src/mcp/tools/code-owners.ts +22 -0
package/src/mcp/tools/{communities.js → communities.ts} +11 -1
package/src/mcp/tools/{complexity.js → complexity.ts} +14 -2
package/src/mcp/tools/{context.js → context.ts} +14 -1
package/src/mcp/tools/{dataflow.js → dataflow.ts} +15 -3
package/src/mcp/tools/{diff-impact.js → diff-impact.ts} +12 -1
package/src/mcp/tools/{execution-flow.js → execution-flow.ts} +13 -1
package/src/mcp/tools/{export-graph.js → export-graph.ts} +13 -3
package/src/mcp/tools/{file-deps.js → file-deps.ts} +9 -1
package/src/mcp/tools/{file-exports.js → file-exports.ts} +10 -1
package/src/mcp/tools/{find-cycles.js → find-cycles.ts} +5 -1
package/src/mcp/tools/{fn-impact.js → fn-impact.ts} +12 -1
package/src/mcp/tools/impact-analysis.ts +15 -0
package/src/mcp/tools/{implementations.js → implementations.ts} +11 -1
package/src/mcp/tools/{index.js → index.ts} +11 -3
package/src/mcp/tools/{interfaces.js → interfaces.ts} +11 -1
package/src/mcp/tools/{list-functions.js → list-functions.ts} +10 -1
package/src/mcp/tools/list-repos.ts +17 -0
package/src/mcp/tools/module-map.ts +13 -0
package/src/mcp/tools/{node-roles.js → node-roles.ts} +10 -1
package/src/mcp/tools/path.ts +24 -0
package/src/mcp/tools/{query.js → query.ts} +19 -2
package/src/mcp/tools/{semantic-search.js → semantic-search.ts} +16 -7
package/src/mcp/tools/{sequence.js → sequence.ts} +15 -2
package/src/mcp/tools/{structure.js → structure.ts} +11 -1
package/src/mcp/tools/symbol-children.ts +24 -0
package/src/mcp/tools/{triage.js → triage.ts} +20 -5
package/src/mcp/tools/{where.js → where.ts} +10 -1
package/src/presentation/{audit.js → audit.ts} +23 -6
package/src/presentation/batch.ts +49 -0
package/src/presentation/{branch-compare.js → branch-compare.ts} +59 -12
package/src/presentation/{brief.js → brief.ts} +26 -14
package/src/presentation/{cfg.js → cfg.ts} +37 -5
package/src/presentation/{check.js → check.ts} +61 -5
package/src/presentation/{cochange.js → cochange.ts} +30 -10
package/src/presentation/{colors.js → colors.ts} +8 -3
package/src/presentation/{communities.js → communities.ts} +45 -5
package/src/presentation/{complexity.js → complexity.ts} +49 -5
package/src/presentation/dataflow.ts +173 -0
package/src/presentation/{export.js → export.ts} +160 -95
package/src/presentation/{flow.js → flow.ts} +39 -8
package/src/presentation/{manifesto.js → manifesto.ts} +26 -7
package/src/presentation/{owners.js → owners.ts} +43 -6
package/src/presentation/queries-cli/{exports.js → exports.ts} +49 -8
package/src/presentation/queries-cli/{impact.js → impact.ts} +139 -23
package/src/presentation/queries-cli/{inspect.js → inspect.ts} +209 -28
package/src/presentation/queries-cli/{overview.js → overview.ts} +151 -30
package/src/presentation/queries-cli/{path.js → path.ts} +53 -9
package/src/presentation/{query.js → query.ts} +0 -4
package/src/presentation/{result-formatter.js → result-formatter.ts} +44 -48
package/src/presentation/sequence-renderer.ts +46 -0
package/src/presentation/{sequence.js → sequence.ts} +16 -5
package/src/presentation/{structure.js → structure.ts} +62 -5
package/src/presentation/{table.js → table.ts} +14 -8
package/src/presentation/{triage.js → triage.ts} +44 -8
package/src/presentation/{viewer.js → viewer.ts} +96 -54
package/src/shared/{constants.js → constants.ts} +4 -4
package/src/shared/{errors.js → errors.ts} +16 -20
package/src/shared/{file-utils.js → file-utils.ts} +55 -23
package/src/shared/{generators.js → generators.ts} +78 -31
package/src/shared/{hierarchy.js → hierarchy.ts} +12 -6
package/src/shared/{kinds.js → kinds.ts} +34 -12
package/src/shared/{normalize.js → normalize.ts} +37 -10
package/src/shared/{paginate.js → paginate.ts} +30 -19
package/src/types.ts +258 -17
package/src/vendor.d.ts +39 -0
package/dist/index.cjs.map +0 -1
package/dist/index.d.cts +0 -3
package/dist/index.d.cts.map +0 -1
package/src/cli/commands/models.js +0 -19
package/src/db/repository/base.js +0 -201
package/src/db/repository/dataflow.js +0 -17
package/src/domain/graph/builder/context.js +0 -85
package/src/domain/graph/builder/helpers.js +0 -218
package/src/domain/graph/builder/incremental.js +0 -224
package/src/domain/graph/cycles.js +0 -82
package/src/domain/search/stores/sqlite-blob.js +0 -24
package/src/features/batch.js +0 -156
package/src/graph/algorithms/louvain.js +0 -26
package/src/graph/builders/structure.js +0 -40
package/src/graph/builders/temporal.js +0 -33
package/src/mcp/server.js +0 -143
package/src/mcp/tools/batch-query.js +0 -11
package/src/mcp/tools/brief.js +0 -8
package/src/mcp/tools/code-owners.js +0 -12
package/src/mcp/tools/impact-analysis.js +0 -12
package/src/mcp/tools/list-repos.js +0 -11
package/src/mcp/tools/module-map.js +0 -6
package/src/mcp/tools/path.js +0 -12
package/src/mcp/tools/symbol-children.js +0 -14
package/src/presentation/batch.js +0 -26
package/src/presentation/dataflow.js +0 -110
package/src/presentation/sequence-renderer.js +0 -43
/package/src/cli/shared/{output.js → output.ts} +0 -0
/package/src/domain/graph/{builder.js → builder.ts} +0 -0
/package/src/extractors/{index.js → index.ts} +0 -0
/package/src/graph/builders/{index.js → index.ts} +0 -0
/package/src/graph/classifiers/{index.js → index.ts} +0 -0
/package/src/graph/{index.js → index.ts} +0 -0
/package/src/{index.js → index.ts} +0 -0
/package/src/infrastructure/{result-formatter.js → result-formatter.ts} +0 -0
/package/src/mcp/{index.js → index.ts} +0 -0
/package/src/presentation/queries-cli/{index.js → index.ts} +0 -0
/package/src/presentation/{queries-cli.js → queries-cli.ts} +0 -0

package/dist/presentation/viewer.js CHANGED Viewed

@@ -1,16 +1,3 @@
-/**
- * Interactive HTML viewer — presentation layer.
- *
- * Exports two concerns:
- * - renderPlotHTML(): pure data → HTML transform (no I/O) that receives
- *   prepared graph data and config, returns a self-contained HTML string
- *   with vis-network. All graph data must be pre-loaded via prepareGraphData().
- * - loadPlotConfig(): reads .plotDotCfg / .plotDotCfg.json files from disk
- *   and merges them with defaults. This performs filesystem I/O.
- *
- * Color constants are defined in ./colors.js and re-exported here for
- * backward compatibility.
- */
 import fs from 'node:fs';
 import path from 'node:path';
 import { COMMUNITY_COLORS, DEFAULT_NODE_COLORS, DEFAULT_ROLE_COLORS } from './colors.js';
@@ -33,10 +20,6 @@ export const DEFAULT_CONFIG = {
     riskThresholds: { highBlastRadius: 10, lowMI: 40 },
 };
 // ─── Config Loading ──────────────────────────────────────────────────
-/**
- * Load .plotDotCfg or .plotDotCfg.json from given directory.
- * Returns merged config with defaults.
- */
 export function loadPlotConfig(dir) {
     for (const name of ['.plotDotCfg', '.plotDotCfg.json']) {
         const p = path.join(dir, name);
@@ -94,14 +77,14 @@ export function buildLayoutOptions(cfg) {
         },
         edges: {
             arrows: 'to',
-            color: cfg.edgeStyle.color || '#666',
-            smooth: cfg.edgeStyle.smooth !== false,
+            color: cfg.edgeStyle?.color || '#666',
+            smooth: cfg.edgeStyle?.smooth !== false,
         },
         physics: {
-            enabled: cfg.physics.enabled !== false,
+            enabled: cfg.physics?.enabled !== false,
             barnesHut: {
                 gravitationalConstant: -3000,
-                springLength: cfg.physics.nodeDistance || 150,
+                springLength: cfg.physics?.nodeDistance || 150,
             },
         },
         interaction: {
@@ -109,32 +92,27 @@ export function buildLayoutOptions(cfg) {
             hover: true,
         },
     };
-    if (cfg.layout.algorithm === 'hierarchical') {
+    if (cfg.layout?.algorithm === 'hierarchical') {
         opts.layout = {
             hierarchical: {
                 enabled: true,
-                direction: cfg.layout.direction || 'LR',
+                direction: cfg.layout?.direction || 'LR',
                 sortMethod: 'directed',
-                nodeSpacing: cfg.physics.nodeDistance || 150,
+                nodeSpacing: cfg.physics?.nodeDistance || 150,
             },
         };
     }
     return opts;
 }
-// ─── HTML Renderer ───────────────────────────────────────────────────
-/**
- * Render a self-contained interactive HTML file with vis-network.
- *
- * Pure transform: prepared graph data + config → HTML string.
- *
- * @param {{ nodes: Array, edges: Array, seedNodeIds: Array }} data - From prepareGraphData()
- * @param {object} cfg - Viewer config (from loadPlotConfig or DEFAULT_CONFIG)
- * @returns {string} Complete HTML document
- */
 export function renderPlotHTML(data, cfg) {
     const layoutOpts = buildLayoutOptions(cfg);
     const title = cfg.title || 'Codegraph';
     // Resolve effective colorBy (overlays.complexity overrides)
+    const layoutAlgorithm = cfg.layout?.algorithm || 'hierarchical';
+    const layoutDirection = cfg.layout?.direction || 'LR';
+    const physicsEnabled = cfg.physics?.enabled !== false;
+    const sizeBy = cfg.sizeBy || 'uniform';
+    const clusterBy = cfg.clusterBy || 'none';
     const effectiveColorBy = cfg.overlays?.complexity && cfg.colorBy === 'kind' ? 'complexity' : cfg.colorBy || 'kind';
     const effectiveRisk = cfg.overlays?.risk || false;
     return `<!DOCTYPE html>
@@ -178,12 +156,12 @@ export function renderPlotHTML(data, cfg) {
 <div id="controls">
   <label>Layout:
     <select id="layoutSelect">
-      <option value="hierarchical"${cfg.layout.algorithm === 'hierarchical' ? ' selected' : ''}>Hierarchical</option>
-      <option value="force"${cfg.layout.algorithm === 'force' ? ' selected' : ''}>Force</option>
-      <option value="radial"${cfg.layout.algorithm === 'radial' ? ' selected' : ''}>Radial</option>
+      <option value="hierarchical"${layoutAlgorithm === 'hierarchical' ? ' selected' : ''}>Hierarchical</option>
+      <option value="force"${layoutAlgorithm === 'force' ? ' selected' : ''}>Force</option>
+      <option value="radial"${layoutAlgorithm === 'radial' ? ' selected' : ''}>Radial</option>
     </select>
   </label>
-  <label>Physics: <input type="checkbox" id="physicsToggle"${cfg.physics.enabled ? ' checked' : ''}></label>
+  <label>Physics: <input type="checkbox" id="physicsToggle"${physicsEnabled ? ' checked' : ''}></label>
   <label>Search: <input type="text" id="searchInput" placeholder="Filter nodes..."></label>
   <label>Color by:
     <select id="colorBySelect">
@@ -195,17 +173,17 @@ export function renderPlotHTML(data, cfg) {
   </label>
   <label>Size by:
     <select id="sizeBySelect">
-      <option value="uniform"${(cfg.sizeBy || 'uniform') === 'uniform' ? ' selected' : ''}>Uniform</option>
-      <option value="fan-in"${cfg.sizeBy === 'fan-in' ? ' selected' : ''}>Fan-in</option>
-      <option value="fan-out"${cfg.sizeBy === 'fan-out' ? ' selected' : ''}>Fan-out</option>
-      <option value="complexity"${cfg.sizeBy === 'complexity' ? ' selected' : ''}>Complexity</option>
+      <option value="uniform"${sizeBy === 'uniform' ? ' selected' : ''}>Uniform</option>
+      <option value="fan-in"${sizeBy === 'fan-in' ? ' selected' : ''}>Fan-in</option>
+      <option value="fan-out"${sizeBy === 'fan-out' ? ' selected' : ''}>Fan-out</option>
+      <option value="complexity"${sizeBy === 'complexity' ? ' selected' : ''}>Complexity</option>
     </select>
   </label>
   <label>Cluster by:
     <select id="clusterBySelect">
-      <option value="none"${(cfg.clusterBy || 'none') === 'none' ? ' selected' : ''}>None</option>
-      <option value="community"${cfg.clusterBy === 'community' ? ' selected' : ''}>Community</option>
-      <option value="directory"${cfg.clusterBy === 'directory' ? ' selected' : ''}>Directory</option>
+      <option value="none"${clusterBy === 'none' ? ' selected' : ''}>None</option>
+      <option value="community"${clusterBy === 'community' ? ' selected' : ''}>Community</option>
+      <option value="directory"${clusterBy === 'directory' ? ' selected' : ''}>Directory</option>
     </select>
   </label>
   <label>Risk: <input type="checkbox" id="riskToggle"${effectiveRisk ? ' checked' : ''}></label>
@@ -567,7 +545,7 @@ network.on('doubleClick', function(params) {
 document.getElementById('layoutSelect').addEventListener('change', function(e) {
   var val = e.target.value;
   if (val === 'hierarchical') {
-    network.setOptions({ layout: { hierarchical: { enabled: true, direction: ${JSON.stringify(cfg.layout.direction || 'LR')} } }, physics: { enabled: document.getElementById('physicsToggle').checked } });
+    network.setOptions({ layout: { hierarchical: { enabled: true, direction: ${JSON.stringify(layoutDirection)} } }, physics: { enabled: document.getElementById('physicsToggle').checked } });
   } else if (val === 'radial') {
     network.setOptions({ layout: { hierarchical: false, improvedLayout: true }, physics: { enabled: true, solver: 'repulsion', repulsion: { nodeDistance: 200 } } });
   } else {
@@ -613,7 +591,7 @@ document.getElementById('detailClose').addEventListener('click', hideDetail);
 /* ── Init ──────────────────────────────────────────────────────────── */
 refreshNodeAppearance();
 updateLegend(${JSON.stringify(effectiveColorBy)});
-${(cfg.clusterBy || 'none') !== 'none' ? `applyClusterBy(${JSON.stringify(cfg.clusterBy)});` : ''}
+${clusterBy !== 'none' ? `applyClusterBy(${JSON.stringify(clusterBy)});` : ''}
 </script>
 </body>
 </html>`;

package/dist/presentation/viewer.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/shared/constants.d.ts CHANGED Viewed

@@ -1,11 +1,11 @@
-export function shouldIgnore(dirName: any): any;
-export function isSupportedFile(filePath: any): boolean;
+import { SUPPORTED_EXTENSIONS } from '../domain/parser.js';
+export declare const IGNORE_DIRS: Set<string>;
+export { SUPPORTED_EXTENSIONS as EXTENSIONS };
+export declare function shouldIgnore(dirName: string): boolean;
+export declare function isSupportedFile(filePath: string): boolean;
 /**
  * Normalize a file path to always use forward slashes.
  * Ensures cross-platform consistency in the SQLite database.
  */
-export function normalizePath(filePath: any): any;
-export const IGNORE_DIRS: Set<string>;
-export { SUPPORTED_EXTENSIONS as EXTENSIONS };
-import { SUPPORTED_EXTENSIONS } from '../domain/parser.js';
+export declare function normalizePath(filePath: string): string;
 //# sourceMappingURL=constants.d.ts.map

package/dist/shared/constants.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/shared/constants.js.map CHANGED Viewed

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package/dist/shared/errors.d.ts CHANGED Viewed

@@ -5,43 +5,35 @@
  * bare Error instances. The CLI top-level catch formats them for humans;
  * MCP returns structured { isError, code } responses.
  */
-export class CodegraphError extends Error {
-    /**
-     * @param {string} message
-     * @param {object} [opts]
-     * @param {string} [opts.code]
-     * @param {string} [opts.file]  - Related file path, if applicable
-     * @param {Error}  [opts.cause] - Original error that triggered this one
-     */
-    constructor(message: string, { code, file, cause }?: {
-        code?: string | undefined;
-        file?: string | undefined;
-        cause?: Error | undefined;
-    });
-    /** @type {string} */
+export interface CodegraphErrorOpts {
+    code?: string;
+    file?: string;
+    cause?: Error;
+}
+export declare class CodegraphError extends Error {
     code: string;
-    /** @type {string|undefined} */
     file: string | undefined;
+    constructor(message: string, { code, file, cause }?: CodegraphErrorOpts);
 }
-export class ParseError extends CodegraphError {
-    constructor(message: any, opts?: {});
+export declare class ParseError extends CodegraphError {
+    constructor(message: string, opts?: CodegraphErrorOpts);
 }
-export class DbError extends CodegraphError {
-    constructor(message: any, opts?: {});
+export declare class DbError extends CodegraphError {
+    constructor(message: string, opts?: CodegraphErrorOpts);
 }
-export class ConfigError extends CodegraphError {
-    constructor(message: any, opts?: {});
+export declare class ConfigError extends CodegraphError {
+    constructor(message: string, opts?: CodegraphErrorOpts);
 }
-export class ResolutionError extends CodegraphError {
-    constructor(message: any, opts?: {});
+export declare class ResolutionError extends CodegraphError {
+    constructor(message: string, opts?: CodegraphErrorOpts);
 }
-export class EngineError extends CodegraphError {
-    constructor(message: any, opts?: {});
+export declare class EngineError extends CodegraphError {
+    constructor(message: string, opts?: CodegraphErrorOpts);
 }
-export class AnalysisError extends CodegraphError {
-    constructor(message: any, opts?: {});
+export declare class AnalysisError extends CodegraphError {
+    constructor(message: string, opts?: CodegraphErrorOpts);
 }
-export class BoundaryError extends CodegraphError {
-    constructor(message: any, opts?: {});
+export declare class BoundaryError extends CodegraphError {
+    constructor(message: string, opts?: CodegraphErrorOpts);
 }
 //# sourceMappingURL=errors.d.ts.map

package/dist/shared/errors.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/shared/errors.js CHANGED Viewed

@@ -6,17 +6,8 @@
  * MCP returns structured { isError, code } responses.
  */
 export class CodegraphError extends Error {
-    /** @type {string} */
     code;
-    /** @type {string|undefined} */
     file;
-    /**
-     * @param {string} message
-     * @param {object} [opts]
-     * @param {string} [opts.code]
-     * @param {string} [opts.file]  - Related file path, if applicable
-     * @param {Error}  [opts.cause] - Original error that triggered this one
-     */
     constructor(message, { code = 'CODEGRAPH_ERROR', file, cause } = {}) {
         super(message, { cause });
         this.name = 'CodegraphError';

package/dist/shared/errors.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/shared/file-utils.d.ts CHANGED Viewed

@@ -2,13 +2,26 @@
  * Resolve a file path relative to repoRoot, rejecting traversal outside the repo.
  * Returns null if the resolved path escapes repoRoot.
  */
-export function safePath(repoRoot: any, file: any): string | null;
-export function readSourceRange(repoRoot: any, file: any, startLine: any, endLine: any, opts?: {}): string | null;
-export function extractSummary(fileLines: any, line: any, opts?: {}): any;
-export function extractSignature(fileLines: any, line: any, opts?: {}): {
-    params: any;
-    returnType: any;
-} | null;
-export function createFileLinesReader(repoRoot: any): (file: any) => any;
-export function isFileLikeTarget(target: any): boolean;
+export declare function safePath(repoRoot: string, file: string): string | null;
+interface ReadSourceRangeOpts {
+    excerptLines?: number;
+}
+export declare function readSourceRange(repoRoot: string, file: string, startLine: number | undefined, endLine: number | undefined, opts?: ReadSourceRangeOpts): string | null;
+interface ExtractSummaryOpts {
+    jsdocEndScanLines?: number;
+    jsdocOpenScanLines?: number;
+    summaryMaxChars?: number;
+}
+export declare function extractSummary(fileLines: string[] | null, line: number | undefined, opts?: ExtractSummaryOpts): string | null;
+interface ExtractSignatureOpts {
+    signatureGatherLines?: number;
+}
+export interface Signature {
+    params: string | null;
+    returnType: string | null;
+}
+export declare function extractSignature(fileLines: string[] | null, line: number | undefined, opts?: ExtractSignatureOpts): Signature | null;
+export declare function createFileLinesReader(repoRoot: string): (file: string) => string[] | null;
+export declare function isFileLikeTarget(target: string): boolean;
+export {};
 //# sourceMappingURL=file-utils.d.ts.map

package/dist/shared/file-utils.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"file-utils.d.ts","sourceRoot":"","sources":["../../src/shared/file-utils.ts"],"names":[],"mappings":"AAKA;;;GAGG;AACH,wBAAgB,QAAQ,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAItE;AAED,UAAU,mBAAmB;IAC3B,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB;AAED,wBAAgB,eAAe,CAC7B,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE,MAAM,EACZ,SAAS,EAAE,MAAM,GAAG,SAAS,EAC7B,OAAO,EAAE,MAAM,GAAG,SAAS,EAC3B,IAAI,GAAE,mBAAwB,GAC7B,MAAM,GAAG,IAAI,CAcf;AAED,UAAU,kBAAkB;IAC1B,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B,kBAAkB,CAAC,EAAE,MAAM,CAAC;IAC5B,eAAe,CAAC,EAAE,MAAM,CAAC;CAC1B;AAED,wBAAgB,cAAc,CAC5B,SAAS,EAAE,MAAM,EAAE,GAAG,IAAI,EAC1B,IAAI,EAAE,MAAM,GAAG,SAAS,EACxB,IAAI,GAAE,kBAAuB,GAC5B,MAAM,GAAG,IAAI,CA4Cf;AAED,UAAU,oBAAoB;IAC5B,oBAAoB,CAAC,EAAE,MAAM,CAAC;CAC/B;AAED,MAAM,WAAW,SAAS;IACxB,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;IACtB,UAAU,EAAE,MAAM,GAAG,IAAI,CAAC;CAC3B;AAED,wBAAgB,gBAAgB,CAC9B,SAAS,EAAE,MAAM,EAAE,GAAG,IAAI,EAC1B,IAAI,EAAE,MAAM,GAAG,SAAS,EACxB,IAAI,GAAE,oBAAyB,GAC9B,SAAS,GAAG,IAAI,CAoDlB;AAED,wBAAgB,qBAAqB,CAAC,QAAQ,EAAE,MAAM,GAAG,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,EAAE,GAAG,IAAI,CAmBzF;AAED,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAQxD"}

package/dist/shared/file-utils.js CHANGED Viewed

@@ -21,7 +21,7 @@ export function readSourceRange(repoRoot, file, startLine, endLine, opts = {}) {
         const lines = content.split('\n');
         const excerptLines = opts.excerptLines ?? 50;
         const start = Math.max(0, (startLine || 1) - 1);
-        const end = Math.min(lines.length, endLine || startLine + excerptLines);
+        const end = Math.min(lines.length, endLine || (startLine || 1) + excerptLines);
         return lines.slice(start, end).join('\n');
     }
     catch (e) {
@@ -61,8 +61,7 @@ export function extractSummary(fileLines, line, opts = {}) {
             if (fileLines[i].trim().startsWith('/**')) {
                 // Extract first non-tag, non-empty line
                 for (let j = i + 1; j <= jsdocEnd; j++) {
-                    const docLine = fileLines[j]
-                        .trim()
+                    const docLine = fileLines[j].trim()
                         .replace(/^\*\s?/, '')
                         .trim();
                     if (docLine && !docLine.startsWith('@') && docLine !== '/' && docLine !== '*/') {

package/dist/shared/file-utils.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/shared/generators.d.ts CHANGED Viewed

@@ -1,62 +1,57 @@
+interface ListFunctionResult {
+    name: string;
+    kind: string;
+    file: string;
+    line: number;
+    endLine: number | null;
+    role: string | null;
+}
+interface IterListOpts {
+    noTests?: boolean;
+    file?: string;
+    pattern?: string;
+}
 /**
  * Generator: stream functions one-by-one using .iterate() for memory efficiency.
- * @param {string} [customDbPath]
- * @param {object} [opts]
- * @param {boolean} [opts.noTests]
- * @param {string} [opts.file]
- * @param {string} [opts.pattern]
- * @yields {{ name: string, kind: string, file: string, line: number, role: string|null }}
  */
-export function iterListFunctions(customDbPath?: string, opts?: {
-    noTests?: boolean | undefined;
-    file?: string | undefined;
-    pattern?: string | undefined;
-}): Generator<{
-    name: any;
-    kind: any;
-    file: any;
-    line: any;
-    endLine: any;
-    role: any;
-}, void, unknown>;
+export declare function iterListFunctions(customDbPath?: string, opts?: IterListOpts): Generator<ListFunctionResult>;
+interface RoleResult {
+    name: string;
+    kind: string;
+    file: string;
+    line: number;
+    endLine: number | null;
+    role: string | null;
+}
+interface IterRolesOpts {
+    noTests?: boolean;
+    role?: string;
+    file?: string;
+}
 /**
  * Generator: stream role-classified symbols one-by-one.
- * @param {string} [customDbPath]
- * @param {object} [opts]
- * @param {boolean} [opts.noTests]
- * @param {string} [opts.role]
- * @param {string} [opts.file]
- * @yields {{ name: string, kind: string, file: string, line: number, endLine: number|null, role: string }}
  */
-export function iterRoles(customDbPath?: string, opts?: {
-    noTests?: boolean | undefined;
-    role?: string | undefined;
-    file?: string | undefined;
-}): Generator<{
-    name: any;
-    kind: any;
-    file: any;
-    line: any;
-    endLine: any;
-    role: any;
-}, void, unknown>;
+export declare function iterRoles(customDbPath?: string, opts?: IterRolesOpts): Generator<RoleResult>;
+interface WhereUse {
+    name: string;
+    file: string;
+    line: number;
+}
+interface WhereResult {
+    name: string;
+    kind: string;
+    file: string;
+    line: number;
+    role: string | null;
+    exported: boolean;
+    uses: WhereUse[];
+}
+interface IterWhereOpts {
+    noTests?: boolean;
+}
 /**
  * Generator: stream symbol lookup results one-by-one.
- * @param {string} target - Symbol name to search for (partial match)
- * @param {string} [customDbPath]
- * @param {object} [opts]
- * @param {boolean} [opts.noTests]
- * @yields {{ name: string, kind: string, file: string, line: number, role: string|null, exported: boolean, uses: object[] }}
  */
-export function iterWhere(target: string, customDbPath?: string, opts?: {
-    noTests?: boolean | undefined;
-}): Generator<{
-    name: any;
-    kind: any;
-    file: any;
-    line: any;
-    role: any;
-    exported: boolean;
-    uses: any;
-}, void, unknown>;
+export declare function iterWhere(target: string, customDbPath?: string, opts?: IterWhereOpts): Generator<WhereResult>;
+export {};
 //# sourceMappingURL=generators.d.ts.map

package/dist/shared/generators.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"generators.d.ts","sourceRoot":"","sources":["../../src/shared/generators.ts"],"names":[],"mappings":"AAMA,UAAU,kBAAkB;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;IACvB,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;CACrB;AAED,UAAU,YAAY;IACpB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAED;;GAEG;AACH,wBAAiB,iBAAiB,CAChC,YAAY,CAAC,EAAE,MAAM,EACrB,IAAI,GAAE,YAAiB,GACtB,SAAS,CAAC,kBAAkB,CAAC,CAsB/B;AAED,UAAU,UAAU;IAClB,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;IACvB,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;CACrB;AAED,UAAU,aAAa;IACrB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED;;GAEG;AACH,wBAAiB,SAAS,CAAC,YAAY,CAAC,EAAE,MAAM,EAAE,IAAI,GAAE,aAAkB,GAAG,SAAS,CAAC,UAAU,CAAC,CAoCjG;AAED,UAAU,QAAQ;IAChB,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;CACd;AAED,UAAU,WAAW;IACnB,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;IACpB,QAAQ,EAAE,OAAO,CAAC;IAClB,IAAI,EAAE,QAAQ,EAAE,CAAC;CAClB;AAED,UAAU,aAAa;IACrB,OAAO,CAAC,EAAE,OAAO,CAAC;CACnB;AAED;;GAEG;AACH,wBAAiB,SAAS,CACxB,MAAM,EAAE,MAAM,EACd,YAAY,CAAC,EAAE,MAAM,EACrB,IAAI,GAAE,aAAkB,GACvB,SAAS,CAAC,WAAW,CAAC,CAyCxB"}

package/dist/shared/generators.js CHANGED Viewed

@@ -4,18 +4,15 @@ import { isTestFile } from '../infrastructure/test-filter.js';
 import { ALL_SYMBOL_KINDS } from './kinds.js';
 /**
  * Generator: stream functions one-by-one using .iterate() for memory efficiency.
- * @param {string} [customDbPath]
- * @param {object} [opts]
- * @param {boolean} [opts.noTests]
- * @param {string} [opts.file]
- * @param {string} [opts.pattern]
- * @yields {{ name: string, kind: string, file: string, line: number, role: string|null }}
  */
 export function* iterListFunctions(customDbPath, opts = {}) {
     const db = openReadonlyOrFail(customDbPath);
     try {
         const noTests = opts.noTests || false;
-        for (const row of iterateFunctionNodes(db, { file: opts.file, pattern: opts.pattern })) {
+        for (const row of iterateFunctionNodes(db, {
+            file: opts.file,
+            pattern: opts.pattern,
+        })) {
             if (noTests && isTestFile(row.file))
                 continue;
             yield {
@@ -34,12 +31,6 @@ export function* iterListFunctions(customDbPath, opts = {}) {
 }
 /**
  * Generator: stream role-classified symbols one-by-one.
- * @param {string} [customDbPath]
- * @param {object} [opts]
- * @param {boolean} [opts.noTests]
- * @param {string} [opts.role]
- * @param {string} [opts.file]
- * @yields {{ name: string, kind: string, file: string, line: number, endLine: number|null, role: string }}
  */
 export function* iterRoles(customDbPath, opts = {}) {
     const db = openReadonlyOrFail(customDbPath);
@@ -52,7 +43,7 @@ export function* iterRoles(customDbPath, opts = {}) {
             params.push(opts.role);
         }
         {
-            const fc = buildFileConditionSQL(opts.file, 'file');
+            const fc = buildFileConditionSQL(opts.file ?? '', 'file');
             if (fc.sql) {
                 conditions.push(fc.sql.replace(/^ AND /, ''));
                 params.push(...fc.params);
@@ -78,11 +69,6 @@ export function* iterRoles(customDbPath, opts = {}) {
 }
 /**
  * Generator: stream symbol lookup results one-by-one.
- * @param {string} target - Symbol name to search for (partial match)
- * @param {string} [customDbPath]
- * @param {object} [opts]
- * @param {boolean} [opts.noTests]
- * @yields {{ name: string, kind: string, file: string, line: number, role: string|null, exported: boolean, uses: object[] }}
  */
 export function* iterWhere(target, customDbPath, opts = {}) {
     const db = openReadonlyOrFail(customDbPath);

package/dist/shared/generators.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/shared/hierarchy.d.ts CHANGED Viewed

@@ -1,2 +1,3 @@
-export function resolveMethodViaHierarchy(db: any, methodName: any): any[];
+import type { BetterSqlite3Database, NodeRow } from '../types.js';
+export declare function resolveMethodViaHierarchy(db: BetterSqlite3Database, methodName: string): NodeRow[];
 //# sourceMappingURL=hierarchy.d.ts.map