@opentrons/step-generation 0.3.12-alpha.0 → 0.3.13-alpha.0

package/README.md

@@ -8,7 +8,7 @@
 
 ## Version
 
-`0.3.12-alpha.0`
+`0.3.13-alpha.0`
 
 ## License
 

package/lib/index.cjs

@@ -52,7 +52,7 @@ ${K(m.join(`,
 )`;return{commands:p,python:_}},fI=(e,t,r)=>{const{axes:n,skipIfMountPositionOk:a}=e,s={commandType:"home",key:D(),params:{axes:n,skipIfMountPositionOk:a}},o=[...n!=null?[`axes=${Ls(n)},
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b of o){const T=a[b].labwareDefURI;if(T===u)f.push({primaryLabwareId:b,adapterLabwareId:null,lidLabwareId:null});else if(T===p){const y=f[f.length-1];y&&(y.adapterLabwareId=b)}else if(T===d){const y=f[f.length-1];y&&(y.lidLabwareId=b)}}const h=[Ze,s,i];for(const b of f){const T=[b.adapterLabwareId,b.primaryLabwareId,b.lidLabwareId,...h].filter(A=>A!=null);n.labware[b.primaryLabwareId]={...n.labware[b.primaryLabwareId],stack:T.slice(T.indexOf(b.primaryLabwareId))},b.adapterLabwareId!=null&&(n.labware[b.adapterLabwareId]={...n.labware[b.adapterLabwareId],stack:T.slice(T.indexOf(b.adapterLabwareId))}),b.lidLabwareId!=null&&(n.labware[b.lidLabwareId]={...n.labware[b.lidLabwareId],stack:T.slice(T.indexOf(b.lidLabwareId))});let y=null;for(const A of T)a[A]!=null&&(y==null?n.labware[A].stackedOnNode={kind:"inStackerHopper",moduleId:s}:n.labware[A].stackedOnNode={labwareId:y},y=A)}const 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y},m),b=s.reduce((y,A)=>{const{id:S,pipetteName:I}=A,w=c.getPipetteSpecsV2(I),E=o.filter(v=>v.commandType==="pickUpTip"&&v.params.pipetteId===S).map(v=>_[v.params.labwareId]),g=Array.from(new Set(E.map(v=>v.labwareDefURI))),k=Array.from(new Set(E.map(v=>v.def)));return w==null||(y[S]={name:I,id:S,tiprackLabwareDef:k,tiprackDefURI:g,spec:w,pythonName:"n/a"}),y},{}),T=o.reduce((y,A)=>{if(A.commandType==="loadLidStack"&&A.result!=null){const{params:S}=A,I=Yu(S);return{...y,stagingAreaEntities:{...y.stagingAreaEntities,...I}}}else if((A.commandType==="loadLabware"||A.commandType==="loadLid")&&A.result!=null){const{params:S}=A,I=Yu(S);return{...y,stagingAreaEntities:{...y.stagingAreaEntities,...I}}}else if(A.commandType==="moveToAddressableArea"||A.commandType==="moveToAddressableAreaForDropTip"){const S=A.params.addressableAreaName,I=`${D()}:${S}`;let 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w=Hh;S==="fixedTrash"?w="cutout12":S.includes("WasteChute")?w="cutoutD3":S.includes("movableTrash")&&(w=`cutout${S.split("movableTrash")[1]}`);let L=y.trashBinEntities;Object.values(y.trashBinEntities).some(g=>g.location===w)||(S.includes("movableTrash")?L={...y.trashBinEntities,[I]:{pythonName:"trash_bin_1",id:I,location:w}}:S==="fixedTrash"&&(L={...y.trashBinEntities,[I]:{pythonName:"trash_bin_1",id:I,location:w}}));let E=y.wasteChuteEntities;return S.includes("WasteChute")&&(E={[I]:{pythonName:"waste_chute",id:I,location:w}}),{...y,trashBinEntities:L,wasteChuteEntities:E}}return y},{wasteChuteEntities:{},trashBinEntities:{},stagingAreaEntities:{},gripperEntities:{},config:{OT_PD_DISABLE_MODULE_RESTRICTIONS:!0}});return{labwareEntities:_,pipetteEntities:b,moduleEntities:h,liquidEntities:u||p?f:{},...T}}const aw={A3:"A4",B3:"B4",C3:"C4",D3:"D4"};function sw(e,t){const r=e.reduce((o,i)=>i.commandType==="loadPipette"&&i.result!=null?{...o,[i.result.pipetteId]:{mount:i.params.mount}}:o,{}),n=e.reduce((o,i)=>{if(i.commandType==="loadModule"&&i.result!=null){const l=c.getModuleDef(i.params.model).moduleType;return{...o,[i.result.moduleId]:{slot:l===c.FLEX_STACKER_MODULE_TYPE?aw[i.params.location.slotName]:i.params.location.slotName,moduleState:xh[l]}}}return o},{}),a=e.reduce((o,i)=>{if(i.commandType==="loadLidStack"&&i.result!=null){const{result:l}=i,u=l.locationSequences,p=l.labwareIds,d=l.stackLabwareId,f=l.stackLocationSequence,h=m=>{if(c.locationIsOffDeck(m))return[m];if("slotName"in m)return[m.slotName];if("moduleId"in m){const _=n[m.moduleId]?.slot??"offDeck";return[m.moduleId,_]}else if("addressableAreaName"in m)return[m.addressableAreaName];return["offDeck"]};if(u!=null){const m=u.reduce((T,y)=>{const A=y.find(S=>S.kind==="onLabware");return A!=null&&(T[A.labwareId]=y),T},{}),_=p.reduce((T,y,A)=>{const S=m[y]??u[A];if(S!=null){const I=Wu(S);T[y]={stack:I[0]===y?I:[y,...I]}}else{const I=i.params.location;c.locationIsOffDeck(I)?T[y]={stack:[y,I]}:"slotName"in I?T[y]={stack:[y,I.slotName]}:T[y]={stack:[y,"offDeck"]}}return T},{}),b=d!=null&&f!=null?[d,...Wu(f)]:null;return{...o,..._,...d!=null&&b!=null?{[d]:{stack:b}}:{}}}else{const m=i.params.location,_=p.reduce((T,y)=>{if(c.locationIsOffDeck(m))T[y]={stack:[y,m]};else if("slotName"in m)T[y]={stack:[y,m.slotName]};else if("moduleId"in m){const A=m.moduleId;T[y]={stack:[y,A,n[A].slot]}}else T[y]={stack:[y,"offDeck"]};return T},{}),b=d!=null?[d,...h(m)]:null;return{...o,..._,...d!=null&&b!=null?{[d]:{stack:b}}:{}}}}else if((i.commandType==="loadLabware"||i.commandType==="loadLid")&&i.result!=null){const l=[i.result.labwareId];if(c.locationIsOffDeck(i.params.location))l.push(i.params.location);else if("slotName"in i.params.location)l.push(i.params.location.slotName);else if("moduleId"in i.params.location){const u=i.params.location.moduleId;if(n[u]==null)return console.warn(`Module ${u} not found when processing loadLabware/loadLid command. `),o;l.push(i.params.location.moduleId,n[i.params.location.moduleId].slot)}else if("labwareId"in i.params.location){const u=i.params.location.labwareId;o[u]==null&&(console.warn(`Parent labware ${u} not found when processing loadLabware/loadLid command. `),o[u]={stack:[u,"offDeck"]});const p=o[u].stack;l.push(u,...p)}else l.push(i.params.location.addressableAreaName);return{...o,[i.result.labwareId]:{stack:l}}}else{if(i.commandType==="flexStacker/setStoredLabware")return ah(i).forEach(u=>{nh(o,u,"setStoredLabwareCount")}),o;if(i.commandType==="flexStacker/fill")return ah(i).forEach(u=>{nh(o,u,"fillCount")}),o}return o},{}),s=Vc({invariantContext:t,labwareLocations:a,moduleLocations:n,pipetteLocations:r});return{frame:{...op(e,t,s),command:e[e.length-1]},invariantContext:t}}const nh=(e,t,r)=>{const n=e[t]??{stack:[t,"offDeck"]};e[t]={...n,[r]:(n[r]??0)+1}},ah=e=>e.result?.storedLabware?.flatMap(r=>[r.primaryLabwareId,r.adapterLabwareId,r.lidLabwareId].filter(n=>n!=null))??[],ip=(e,t)=>e??(t.channels===1?c.SINGLE:t.channels===96?c.ALL:c.COLUMN);var Au,sh;function ow(){if(sh)return Au;sh=1;var e=wc();function t(r,n){var a;return e(r,function(s,o,i){return a=n(s,o,i),!a}),!!a}return Au=t,Au}var Lu,oh;function iw(){if(oh)return Lu;oh=1;var e=Jh(),t=Nn(),r=ow(),n=Qe(),a=Lc();function s(o,i,l){var u=n(o)?e:r;return l&&a(o,i,l)&&(i=void 0),u(o,t(i,3))}return Lu=s,Lu}var lw=iw();const Ba=xe(lw),Bn=(e,t)=>Ba(e,r=>r.moduleState.type===c.HEATERSHAKER_MODULE_TYPE&&r.moduleState.latchOpen!==!1&&c.getAreSlotsHorizontallyAdjacent(r.slot,t)),xn=(e,t,r)=>r.channels!==1&&Ba(e,n=>n.moduleState.type===c.HEATERSHAKER_MODULE_TYPE&&c.getAreSlotsHorizontallyAdjacent(n.slot,t)),xa=(e,t,r,n)=>r.channels!==1&&!n.def.parameters.isTiprack&&Ba(e,a=>a.moduleState.type===c.HEATERSHAKER_MODULE_TYPE&&c.getAreSlotsVerticallyAdjacent(a.slot,t)),My=(e,t,r)=>Ba(e,(a,s)=>c.getAreSlotsHorizontallyAdjacent(r,G(a.stack))&&c.getIsLabwareAboveHeight(t[s].def,c.MAX_LABWARE_HEIGHT_EAST_WEST_HEATER_SHAKER_MM)),Ha=(e,t,r)=>{const n=Fa(e,t[r]?.stack),a=n!=null?e[n].moduleState:null;return!!(a&&a.type===c.HEATERSHAKER_MODULE_TYPE&&a.latchOpen!==!1)},Hn=(e,t,r)=>Ba(e,n=>n.moduleState.type===c.HEATERSHAKER_MODULE_TYPE&&n.moduleState.targetSpeed!=null&&n.moduleState.targetSpeed>0&&(r===c.OT2_ROBOT_TYPE?c.getAreSlotsAdjacent(n.slot,t):c.getAreFlexSlotsAdjacent(n.slot,t))),za=(e,t,r)=>{const n=Fa(e,t[r]?.stack),a=n!=null?e[n].moduleState:null;return!!(a&&a.type===c.HEATERSHAKER_MODULE_TYPE&&a.targetSpeed!==null)},Ds=e=>{const{args:t,pipetteName:r,tiprackUri:n,liquidClassValuesForTip:a}=e;let s=null;"mixBeforeAspirate"in t?s=t.mixBeforeAspirate:"mixFirstAspirate"in t&&(s=t.mixFirstAspirate);const o=uw(t),i={dispense_position:{offset:{x:t.dispenseXOffset,y:t.dispenseYOffset,z:t.dispenseZOffset},position_reference:t.dispensePositionReference},flow_rate_by_volume:[[0,t.dispenseFlowRateUlSec??0]],delay:{enabled:!!t.dispenseDelay?.seconds,...t.dispenseDelay?.seconds?{duration:t.dispenseDelay?.seconds}:{}},submerge:{delay:{enabled:!!t.dispenseSubmergeDelay?.seconds,...t.dispenseSubmergeDelay?.seconds?{duration:t.dispenseSubmergeDelay?.seconds}:{}},speed:t.dispenseSubmergeSpeed??void 0,start_position:{offset:{x:t.dispenseSubmergeXOffset,y:t.dispenseSubmergeYOffset,z:t.dispenseSubmergeZOffset},position_reference:t.dispenseSubmergePositionReference}},retract:{air_gap_by_volume:[[0,t.dispenseAirGapVolume??0]],delay:{enabled:!!t.dispenseRetractDelay?.seconds,...t.dispenseRetractDelay?.seconds?{duration:t.dispenseRetractDelay?.seconds}:{}},end_position:{offset:{x:t.dispenseRetractXOffset,y:t.dispenseRetractYOffset,z:t.dispenseRetractZOffset},position_reference:t.dispenseRetractPositionReference},speed:t.dispenseRetractSpeed??void 0,touch_tip:{enabled:t.touchTipAfterDispense,z_offset:t.touchTipAfterDispense?t.touchTipAfterDispenseOffsetMmFromTop:void 0,mm_from_edge:t.touchTipAfterDispense&&t.touchTipAfterDispenseMmFromEdge!=null?t.touchTipAfterDispenseMmFromEdge:void 0,speed:t.touchTipAfterDispense?t.touchTipAfterDispenseSpeed:void 0},blowout:{enabled:t.blowoutLocation!=null,location:Fy(t.blowoutLocation),flow_rate:t.blowoutLocation!=null?t.blowoutFlowRateUlSec:void 0,...o!=null?{blowout_position:o}:{}}}},l={[r]:{[n]:{aspirate:{aspirate_position:{offset:{x:t.aspirateXOffset,y:t.aspirateYOffset,z:t.aspirateZOffset},position_reference:t.aspiratePositionReference},flow_rate_by_volume:[[0,t.aspirateFlowRateUlSec]],pre_wet:t.preWetTip,correction_by_volume:a?.aspirate.correctionByVolume??[[0,0]],delay:{enabled:!!t.aspirateDelay?.seconds,...t.aspirateDelay?.seconds?{duration:t.aspirateDelay?.seconds}:{}},mix:{enabled:!!s?.volume,...s?.times?{repetitions:s.times}:{},...s?.volume?{volume:s.volume}:{}},submerge:{delay:{enabled:!!t.aspirateSubmergeDelay?.seconds,...t.aspirateSubmergeDelay?.seconds?{duration:t.aspirateSubmergeDelay?.seconds}:{}},speed:t.aspirateSubmergeSpeed??void 0,start_position:{offset:{x:t.aspirateSubmergeXOffset,y:t.aspirateSubmergeYOffset,z:t.aspirateSubmergeZOffset},position_reference:t.aspirateSubmergePositionReference}},retract:{air_gap_by_volume:[[0,t.aspirateAirGapVolume??0]],delay:{enabled:!!t.aspirateRetractDelay?.seconds,...t.aspirateRetractDelay?.seconds?{duration:t.aspirateRetractDelay?.seconds}:{}},end_position:{offset:{x:t.aspirateRetractXOffset,y:t.aspirateRetractYOffset,z:t.aspirateRetractZOffset},position_reference:t.aspirateRetractPositionReference},speed:t.aspirateRetractSpeed??void 0,touch_tip:{enabled:t.touchTipAfterAspirate,z_offset:t.touchTipAfterAspirate?t.touchTipAfterAspirateOffsetMmFromTop:void 0,mm_from_edge:t.touchTipAfterAspirate&&t.touchTipAfterAspirateMmFromEdge!=null?t.touchTipAfterAspirateMmFromEdge:void 0,speed:t.touchTipAfterAspirate?t.touchTipAfterAspirateSpeed:void 0}}},dispense:{...i,correction_by_volume:a?.singleDispense.correctionByVolume??[[0,0]],push_out_by_volume:[[0,t.pushOut??0]],mix:{enabled:"mixInDestination"in t?t.mixInDestination!=null:!1,repetitions:"mixInDestination"in t?t.mixInDestination?.times??void 0:void 0,volume:"mixInDestination"in t?t.mixInDestination?.volume??void 0:void 0}},...t.commandCreatorFnName==="distribute"?{multi_dispense:{...i,correction_by_volume:a?.multiDispense?.correctionByVolume??[[0,0]],..."conditioningVolume"in t?{conditioning_by_volume:[[0,t.conditioningVolume??0]]}:{},..."disposalVolume"in t?{disposal_by_volume:[[0,t.disposalVolume??0]]}:{}}}:{}}}},u=JSON.parse(JSON.stringify(l));return Fr(u)},ja=(e,t)=>`${c.getAllLiquidClassDefs()[e].liquidClassName}${t?"_base_class":""}`,Fy=e=>{if(e!=null)return e===zr?"source":e===Mn?"destination":"trash"},uw=e=>{const t=Fy(e.blowoutLocation);return!t||t==="trash"?null:{offset:{x:e.blowoutXPosition??0,y:e.blowoutYPosition??0,z:e.blowoutOffsetFromTopMm??1},position_reference:e.blowoutPositionReference??c.POSITION_REFERENCE_TOP}},Ms=e=>{const{labwareEntities:t,tiprackIds:r}=e;return`tip_racks=[${r.map(a=>t[a].pythonName).join(", ")}]`};var Ou,ih;function cw(){if(ih)return Ou;ih=1;var e="Expected a function";function t(r){if(typeof r!="function")throw new TypeError(e);return function(){var n=arguments;switch(n.length){case 0:return!r.call(this);case 1:return!r.call(this,n[0]);case 2:return!r.call(this,n[0],n[1]);case 3:return!r.call(this,n[0],n[1],n[2])}return!r.apply(this,n)}}return Ou=t,Ou}var Ru,lh;function pw(){if(lh)return Ru;lh=1;var e=Jc(),t=Pn(),r=gs(),n=ar(),a=Cn();function s(o,i,l,u){if(!n(o))return o;i=t(i,o);for(var p=-1,d=i.length,f=d-1,h=o;h!=null&&++p<d;){var m=a(i[p]),_=l;if(m==="__proto__"||m==="constructor"||m==="prototype")return o;if(p!=f){var b=h[m];_=u?u(b,m,h):void 0,_===void 0&&(_=n(b)?b:r(i[p+1])?[]:{})}e(h,m,_),h=h[m]}return o}return Ru=s,Ru}var ku,uh;function dw(){if(uh)return ku;uh=1;var e=Es(),t=pw(),r=Pn();function n(a,s,o){for(var i=-1,l=s.length,u={};++i<l;){var p=s[i],d=e(a,p);o(d,p)&&t(u,r(p,a),d)}return u}return ku=n,ku}var vu,ch;function fw(){if(ch)return vu;ch=1;var e=va(),t=Nn(),r=dw(),n=rp();function a(s,o){if(s==null)return{};var i=e(n(s),function(l){return[l]});return o=t(o),r(s,i,function(l,u){return o(l,u[0])})}return vu=a,vu}var Pu,ph;function mw(){if(ph)return Pu;ph=1;var e=Nn(),t=cw(),r=fw();function n(a,s){return r(a,t(e(s)))}return Pu=n,Pu}var hw=mw();const _w=xe(hw);function Uy(e){return Object.keys(e.wells)}const yw=(e,t)=>{const r=Object.keys(e||{}).filter(n=>e[n]&&e[n].volume>0);return{wellName:t,groupIds:r,ingreds:_w(e,n=>!n||n.volume<=0)}},bw=(e,t)=>{const r=Uy(t);return ut(r,(n,a)=>{const s=e&&e[a];return{...n,[a]:s?yw(e[a],a):{}}},{})},Tw=(e,t)=>{const r={};return t.forEach(n=>{const 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a&&a.length?e(a,r,t):void 0}return Nu=n,Nu}var Lw=Aw();const Ow=xe(Lw),Vy="2.31",Rw="9.0.1";function kw(){return["import json","from opentrons import protocol_api, types"].join(`
 `)}function vw(e){function t(n){return n?new Date(n).toISOString():""}const r=Object.fromEntries(Object.entries({protocolName:e.protocolName,author:e.author,description:e.description,created:t(e.created),internalAppBuildDate:e.internalAppBuildDate,lastModified:t(e.lastModified),category:e.category,subcategory:e.subcategory,tags:e.tags?.length&&e.tags.join(", "),protocolDesigner:e.protocolDesigner,source:e.source}).filter(([n,a])=>a));return`metadata = ${Fr(r)}`}function Pw(e){const r={robotType:{[c.OT2_ROBOT_TYPE]:"OT-2",[c.FLEX_ROBOT_TYPE]:"Flex"}[e],apiLevel:Vy};return`requirements = ${Fr(r)}`}function By(e,t){const r=Object.keys(e).length>0,n=r?Object.values(e).map(a=>`${a.pythonName} = ${be}.load_module(${N(a.model)}, ${N(t[a.id].slot)})`).join(`
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package/lib/index.mjs

@@ -8886,7 +8886,7 @@ function YA() {
   return tu = n, tu;
 }
 var ZA = YA();
-const JA = /* @__PURE__ */ Ye(ZA), QA = "2.30", lL = "9.0.1";
+const JA = /* @__PURE__ */ Ye(ZA), QA = "2.31", lL = "9.0.1";
 function cL() {
   return ["import json", "from opentrons import protocol_api, types"].join(`
 `);

package/lib/utils/pythonFileUtils.d.ts

@@ -1,6 +1,6 @@
 import type { ProtocolFile, RobotType } from '@opentrons/shared-data';
 import type { ChangeTipOptions, InvariantContext, LabwareEntities, LabwareLiquidState, LabwareTemporalProperties, LiquidEntities, ModuleEntities, ModuleTemporalProperties, PipetteEntities, Timeline, TimelineFrame, TrashBinEntities, WasteChuteEntities } from '../types';
-export declare const PAPI_VERSION = "2.30";
+export declare const PAPI_VERSION = "2.31";
 export declare const PD_APPLICATION_VERSION = "9.0.1";
 export declare function pythonImports(): string;
 export declare function pythonMetadata(fileMetadata: ProtocolFile<{}>['metadata'] & {

package/package.json

@@ -9,7 +9,7 @@
   },
   "name": "@opentrons/step-generation",
   "productName": "Opentrons Step Generation",
-  "version": "0.3.12-alpha.0",
+  "version": "0.3.13-alpha.0",
   "description": "Step generation",
   "main": "lib/index.cjs",
   "types": "lib/index.d.ts",
@@ -37,7 +37,7 @@
     "immer": "^10.1.3",
     "lodash": "4.18.1",
     "uuid": "14.0.0",
-    "@opentrons/shared-data": "0.3.12-alpha.0"
+    "@opentrons/shared-data": "0.3.13-alpha.0"
   },
   "devDependencies": {
     "@types/lodash": "4.17.24"