@opentrons/shared-data 0.0.0-alpha.14
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/Makefile +100 -0
- package/command/schemas/7.json +3301 -0
- package/command/schemas/8.json +3632 -0
- package/command/types/annotation.ts +37 -0
- package/command/types/calibration.ts +84 -0
- package/command/types/gantry.ts +176 -0
- package/command/types/incidental.ts +21 -0
- package/command/types/index.ts +77 -0
- package/command/types/module.ts +307 -0
- package/command/types/pipetting.ts +228 -0
- package/command/types/setup.ts +199 -0
- package/command/types/timing.ts +58 -0
- package/commandAnnotation/schemas/1.json +74 -0
- package/commandAnnotation/types/index.ts +19 -0
- package/deck/definitions/3/ot2_short_trash.json +477 -0
- package/deck/definitions/3/ot2_standard.json +477 -0
- package/deck/definitions/3/ot3_standard.json +989 -0
- package/deck/definitions/4/ot2_short_trash.json +403 -0
- package/deck/definitions/4/ot2_standard.json +403 -0
- package/deck/definitions/4/ot3_standard.json +597 -0
- package/deck/fixtures/3/deckExample.json +481 -0
- package/deck/index.ts +1 -0
- package/deck/schemas/1.json +240 -0
- package/deck/schemas/2.json +250 -0
- package/deck/schemas/3.json +297 -0
- package/deck/schemas/4.json +321 -0
- package/deck/types/schemaV4.ts +84 -0
- package/errors/definitions/1/errors.json +222 -0
- package/errors/schemas/1.json +50 -0
- package/gripper/definitions/1/gripperV1.1.json +28 -0
- package/gripper/definitions/1/gripperV1.2.json +28 -0
- package/gripper/definitions/1/gripperV1.json +27 -0
- package/gripper/schemas/1.json +181 -0
- package/js/__tests__/__snapshots__/pipettes.test.ts.snap +5969 -0
- package/js/__tests__/deckSchemas.test.ts +87 -0
- package/js/__tests__/errors.test.js +21 -0
- package/js/__tests__/getAreSlotsAdjacent.test.ts +128 -0
- package/js/__tests__/getWellNamePerMultiTip.test.ts +162 -0
- package/js/__tests__/labwareDefQuirks.test.ts +37 -0
- package/js/__tests__/labwareDefSchemaV1.test.ts +82 -0
- package/js/__tests__/labwareDefSchemaV2.test.ts +298 -0
- package/js/__tests__/moduleAccessors.test.ts +50 -0
- package/js/__tests__/moduleSpecsSchema.test.ts +77 -0
- package/js/__tests__/pipetteSchemaV2.test.ts +107 -0
- package/js/__tests__/pipetteSpecSchemas.test.ts +48 -0
- package/js/__tests__/pipettes.test.ts +58 -0
- package/js/__tests__/protocolSchemaV4.test.ts +137 -0
- package/js/__tests__/protocolSchemaV5.test.ts +137 -0
- package/js/__tests__/protocolSchemaV6.test.ts +132 -0
- package/js/__tests__/protocolSchemaV7.test.ts +64 -0
- package/js/__tests__/protocolValidation.test.ts +83 -0
- package/js/__tests__/sortWells.test.ts +40 -0
- package/js/__tests__/splitWellsOnColumn.test.ts +21 -0
- package/js/__tests__/validateErrors.test.js +34 -0
- package/js/constants.ts +336 -0
- package/js/cypressUtils.ts +35 -0
- package/js/errors.ts +33 -0
- package/js/fixtures.ts +161 -0
- package/js/getLabware.ts +162 -0
- package/js/gripper.ts +29 -0
- package/js/helpers/__tests__/getAdapterName.test.ts +31 -0
- package/js/helpers/__tests__/getDeckDefFromLoadedLabware.test.ts +12 -0
- package/js/helpers/__tests__/getVectorDifference.test.ts +25 -0
- package/js/helpers/__tests__/getVectorSum.test.ts +21 -0
- package/js/helpers/__tests__/labwareInference.test.ts +84 -0
- package/js/helpers/__tests__/orderWells.test.ts +87 -0
- package/js/helpers/__tests__/parseProtocolData.test.ts +165 -0
- package/js/helpers/__tests__/volume.test.ts +108 -0
- package/js/helpers/__tests__/wellSets.test.ts +352 -0
- package/js/helpers/get96Channel384WellPlateWells.ts +44 -0
- package/js/helpers/getLoadedLabwareDefinitionsByUri.ts +30 -0
- package/js/helpers/getModuleVizDims.ts +118 -0
- package/js/helpers/getOccludedSlotCountForModule.ts +13 -0
- package/js/helpers/getVectorDifference.ts +12 -0
- package/js/helpers/getVectorSum.ts +12 -0
- package/js/helpers/getWellNamePerMultiTip.ts +86 -0
- package/js/helpers/getWellTotalVolume.ts +16 -0
- package/js/helpers/index.ts +346 -0
- package/js/helpers/labwareInference.ts +92 -0
- package/js/helpers/orderWells.ts +69 -0
- package/js/helpers/parseProtocolData.ts +141 -0
- package/js/helpers/volume.ts +35 -0
- package/js/helpers/wellIsRect.ts +6 -0
- package/js/helpers/wellSets.ts +150 -0
- package/js/index.ts +14 -0
- package/js/labwareTools/__tests__/__snapshots__/createIrregularLabware.test.ts.snap +3 -0
- package/js/labwareTools/__tests__/__snapshots__/createLabware.test.ts.snap +3 -0
- package/js/labwareTools/__tests__/createDefaultDisplayName.test.ts +111 -0
- package/js/labwareTools/__tests__/createIrregularLabware.test.ts +226 -0
- package/js/labwareTools/__tests__/createLabware.test.ts +147 -0
- package/js/labwareTools/index.ts +452 -0
- package/js/modules.ts +97 -0
- package/js/pipettes.ts +89 -0
- package/js/protocols.ts +290 -0
- package/js/schema.ts +80 -0
- package/js/scripts/build.js +32 -0
- package/js/scripts/generateDeckLayersFromSVG.js +46 -0
- package/js/titleCase.ts +30 -0
- package/js/types.ts +600 -0
- package/labware/definitions/1/12-well-plate.json +147 -0
- package/labware/definitions/1/24-vial-rack.json +281 -0
- package/labware/definitions/1/24-well-plate.json +281 -0
- package/labware/definitions/1/384-plate.json +4667 -0
- package/labware/definitions/1/48-vial-plate.json +547 -0
- package/labware/definitions/1/48-well-plate.json +547 -0
- package/labware/definitions/1/5ml-3x4.json +147 -0
- package/labware/definitions/1/6-well-plate.json +80 -0
- package/labware/definitions/1/96-PCR-flat.json +1079 -0
- package/labware/definitions/1/96-PCR-tall.json +1079 -0
- package/labware/definitions/1/96-deep-well.json +1079 -0
- package/labware/definitions/1/96-flat.json +1079 -0
- package/labware/definitions/1/96-well-plate-20mm.json +1079 -0
- package/labware/definitions/1/MALDI-plate.json +4282 -0
- package/labware/definitions/1/PCR-strip-tall.json +1079 -0
- package/labware/definitions/1/T25-flask.json +20 -0
- package/labware/definitions/1/T75-flask.json +20 -0
- package/labware/definitions/1/alum-block-pcr-strips.json +188 -0
- package/labware/definitions/1/biorad-hardshell-96-PCR.json +1079 -0
- package/labware/definitions/1/e-gelgol.json +1078 -0
- package/labware/definitions/1/fixed-trash.json +19 -0
- package/labware/definitions/1/hampton-1ml-deep-block.json +1078 -0
- package/labware/definitions/1/opentrons-aluminum-block-2ml-eppendorf.json +281 -0
- package/labware/definitions/1/opentrons-aluminum-block-2ml-screwcap.json +281 -0
- package/labware/definitions/1/opentrons-aluminum-block-96-PCR-plate.json +1079 -0
- package/labware/definitions/1/opentrons-aluminum-block-PCR-strips-200ul.json +1079 -0
- package/labware/definitions/1/opentrons-tiprack-10ul.json +986 -0
- package/labware/definitions/1/opentrons-tiprack-300ul.json +986 -0
- package/labware/definitions/1/opentrons-tuberack-1.5ml-eppendorf.json +281 -0
- package/labware/definitions/1/opentrons-tuberack-15_50ml.json +125 -0
- package/labware/definitions/1/opentrons-tuberack-15ml.json +181 -0
- package/labware/definitions/1/opentrons-tuberack-2ml-eppendorf.json +281 -0
- package/labware/definitions/1/opentrons-tuberack-2ml-screwcap.json +281 -0
- package/labware/definitions/1/opentrons-tuberack-50ml.json +80 -0
- package/labware/definitions/1/point.json +18 -0
- package/labware/definitions/1/rigaku-compact-crystallization-plate.json +2146 -0
- package/labware/definitions/1/small_vial_rack_16x45.json +280 -0
- package/labware/definitions/1/tall-fixed-trash.json +19 -0
- package/labware/definitions/1/tiprack-1000ul-H.json +503 -0
- package/labware/definitions/1/tiprack-1000ul-chem.json +1034 -0
- package/labware/definitions/1/tiprack-1000ul.json +986 -0
- package/labware/definitions/1/tiprack-10ul-H.json +503 -0
- package/labware/definitions/1/tiprack-10ul.json +986 -0
- package/labware/definitions/1/tiprack-200ul.json +986 -0
- package/labware/definitions/1/trash-box.json +20 -0
- package/labware/definitions/1/trough-12row-short.json +143 -0
- package/labware/definitions/1/trough-12row.json +143 -0
- package/labware/definitions/1/trough-1row-25ml.json +21 -0
- package/labware/definitions/1/tube-rack-.75ml.json +281 -0
- package/labware/definitions/1/tube-rack-15_50ml.json +125 -0
- package/labware/definitions/1/tube-rack-2ml-9x9.json +911 -0
- package/labware/definitions/1/tube-rack-2ml.json +281 -0
- package/labware/definitions/1/tube-rack-5ml-96.json +1079 -0
- package/labware/definitions/1/tube-rack-80well.json +907 -0
- package/labware/definitions/1/wheaton_vial_rack.json +565 -0
- package/labware/definitions/2/agilent_1_reservoir_290ml/1.json +54 -0
- package/labware/definitions/2/appliedbiosystemsmicroamp_384_wellplate_40ul/1.json +4320 -0
- package/labware/definitions/2/armadillo_96_wellplate_200ul_pcr_full_skirt/1.json +1019 -0
- package/labware/definitions/2/armadillo_96_wellplate_200ul_pcr_full_skirt/2.json +1045 -0
- package/labware/definitions/2/axygen_1_reservoir_90ml/1.json +56 -0
- package/labware/definitions/2/biorad_384_wellplate_50ul/1.json +4329 -0
- package/labware/definitions/2/biorad_384_wellplate_50ul/2.json +4331 -0
- package/labware/definitions/2/biorad_96_wellplate_200ul_pcr/1.json +1020 -0
- package/labware/definitions/2/biorad_96_wellplate_200ul_pcr/2.json +1036 -0
- package/labware/definitions/2/corning_12_wellplate_6.9ml_flat/1.json +171 -0
- package/labware/definitions/2/corning_12_wellplate_6.9ml_flat/2.json +180 -0
- package/labware/definitions/2/corning_24_wellplate_3.4ml_flat/1.json +293 -0
- package/labware/definitions/2/corning_24_wellplate_3.4ml_flat/2.json +300 -0
- package/labware/definitions/2/corning_384_wellplate_112ul_flat/1.json +4703 -0
- package/labware/definitions/2/corning_384_wellplate_112ul_flat/2.json +4717 -0
- package/labware/definitions/2/corning_48_wellplate_1.6ml_flat/1.json +535 -0
- package/labware/definitions/2/corning_48_wellplate_1.6ml_flat/2.json +544 -0
- package/labware/definitions/2/corning_6_wellplate_16.8ml_flat/1.json +103 -0
- package/labware/definitions/2/corning_6_wellplate_16.8ml_flat/2.json +110 -0
- package/labware/definitions/2/corning_96_wellplate_360ul_flat/1.json +1049 -0
- package/labware/definitions/2/corning_96_wellplate_360ul_flat/2.json +1063 -0
- package/labware/definitions/2/eppendorf_96_tiprack_1000ul_eptips/1.json +1019 -0
- package/labware/definitions/2/eppendorf_96_tiprack_10ul_eptips/1.json +1019 -0
- package/labware/definitions/2/geb_96_tiprack_1000ul/1.json +1017 -0
- package/labware/definitions/2/geb_96_tiprack_10ul/1.json +1017 -0
- package/labware/definitions/2/nest_12_reservoir_15ml/1.json +190 -0
- package/labware/definitions/2/nest_1_reservoir_195ml/1.json +54 -0
- package/labware/definitions/2/nest_1_reservoir_195ml/2.json +56 -0
- package/labware/definitions/2/nest_1_reservoir_290ml/1.json +54 -0
- package/labware/definitions/2/nest_96_wellplate_100ul_pcr_full_skirt/1.json +1018 -0
- package/labware/definitions/2/nest_96_wellplate_100ul_pcr_full_skirt/2.json +1039 -0
- package/labware/definitions/2/nest_96_wellplate_200ul_flat/1.json +1017 -0
- package/labware/definitions/2/nest_96_wellplate_200ul_flat/2.json +1031 -0
- package/labware/definitions/2/nest_96_wellplate_2ml_deep/1.json +1121 -0
- package/labware/definitions/2/nest_96_wellplate_2ml_deep/2.json +1137 -0
- package/labware/definitions/2/opentrons_10_tuberack_falcon_4x50ml_6x15ml_conical/1.json +164 -0
- package/labware/definitions/2/opentrons_10_tuberack_falcon_4x50ml_6x15ml_conical_acrylic/1.json +162 -0
- package/labware/definitions/2/opentrons_10_tuberack_nest_4x50ml_6x15ml_conical/1.json +160 -0
- package/labware/definitions/2/opentrons_15_tuberack_falcon_15ml_conical/1.json +211 -0
- package/labware/definitions/2/opentrons_15_tuberack_nest_15ml_conical/1.json +209 -0
- package/labware/definitions/2/opentrons_1_trash_1100ml_fixed/1.json +50 -0
- package/labware/definitions/2/opentrons_1_trash_3200ml_fixed/1.json +50 -0
- package/labware/definitions/2/opentrons_1_trash_850ml_fixed/1.json +50 -0
- package/labware/definitions/2/opentrons_24_aluminumblock_generic_2ml_screwcap/1.json +300 -0
- package/labware/definitions/2/opentrons_24_aluminumblock_generic_2ml_screwcap/2.json +301 -0
- package/labware/definitions/2/opentrons_24_aluminumblock_nest_0.5ml_screwcap/1.json +299 -0
- package/labware/definitions/2/opentrons_24_aluminumblock_nest_1.5ml_screwcap/1.json +299 -0
- package/labware/definitions/2/opentrons_24_aluminumblock_nest_1.5ml_snapcap/1.json +301 -0
- package/labware/definitions/2/opentrons_24_aluminumblock_nest_2ml_screwcap/1.json +299 -0
- package/labware/definitions/2/opentrons_24_aluminumblock_nest_2ml_snapcap/1.json +301 -0
- package/labware/definitions/2/opentrons_24_tuberack_eppendorf_1.5ml_safelock_snapcap/1.json +312 -0
- package/labware/definitions/2/opentrons_24_tuberack_eppendorf_2ml_safelock_snapcap/1.json +311 -0
- package/labware/definitions/2/opentrons_24_tuberack_eppendorf_2ml_safelock_snapcap_acrylic/1.json +309 -0
- package/labware/definitions/2/opentrons_24_tuberack_generic_0.75ml_snapcap_acrylic/1.json +298 -0
- package/labware/definitions/2/opentrons_24_tuberack_generic_2ml_screwcap/1.json +300 -0
- package/labware/definitions/2/opentrons_24_tuberack_nest_0.5ml_screwcap/1.json +300 -0
- package/labware/definitions/2/opentrons_24_tuberack_nest_1.5ml_screwcap/1.json +300 -0
- package/labware/definitions/2/opentrons_24_tuberack_nest_1.5ml_snapcap/1.json +302 -0
- package/labware/definitions/2/opentrons_24_tuberack_nest_2ml_screwcap/1.json +300 -0
- package/labware/definitions/2/opentrons_24_tuberack_nest_2ml_snapcap/1.json +302 -0
- package/labware/definitions/2/opentrons_40_aluminumblock_eppendorf_24x2ml_safelock_snapcap_generic_16x0.2ml_pcr_strip/1.json +481 -0
- package/labware/definitions/2/opentrons_6_tuberack_falcon_50ml_conical/1.json +112 -0
- package/labware/definitions/2/opentrons_6_tuberack_nest_50ml_conical/1.json +110 -0
- package/labware/definitions/2/opentrons_96_aluminumblock_biorad_wellplate_200ul/1.json +1029 -0
- package/labware/definitions/2/opentrons_96_aluminumblock_generic_pcr_strip_200ul/1.json +1026 -0
- package/labware/definitions/2/opentrons_96_aluminumblock_generic_pcr_strip_200ul/2.json +1027 -0
- package/labware/definitions/2/opentrons_96_aluminumblock_nest_wellplate_100ul/1.json +1027 -0
- package/labware/definitions/2/opentrons_96_deep_well_adapter/1.json +41 -0
- package/labware/definitions/2/opentrons_96_deep_well_adapter_nest_wellplate_2ml_deep/1.json +1121 -0
- package/labware/definitions/2/opentrons_96_filtertiprack_1000ul/1.json +1017 -0
- package/labware/definitions/2/opentrons_96_filtertiprack_10ul/1.json +1017 -0
- package/labware/definitions/2/opentrons_96_filtertiprack_200ul/1.json +1017 -0
- package/labware/definitions/2/opentrons_96_filtertiprack_20ul/1.json +1017 -0
- package/labware/definitions/2/opentrons_96_flat_bottom_adapter/1.json +41 -0
- package/labware/definitions/2/opentrons_96_flat_bottom_adapter_nest_wellplate_200ul_flat/1.json +1027 -0
- package/labware/definitions/2/opentrons_96_pcr_adapter/1.json +1032 -0
- package/labware/definitions/2/opentrons_96_pcr_adapter_armadillo_wellplate_200ul/1.json +1027 -0
- package/labware/definitions/2/opentrons_96_pcr_adapter_nest_wellplate_100ul_pcr_full_skirt/1.json +1025 -0
- package/labware/definitions/2/opentrons_96_tiprack_1000ul/1.json +1019 -0
- package/labware/definitions/2/opentrons_96_tiprack_10ul/1.json +1019 -0
- package/labware/definitions/2/opentrons_96_tiprack_20ul/1.json +1019 -0
- package/labware/definitions/2/opentrons_96_tiprack_300ul/1.json +1019 -0
- package/labware/definitions/2/opentrons_96_well_aluminum_block/1.json +1032 -0
- package/labware/definitions/2/opentrons_96_wellplate_200ul_pcr_full_skirt/1.json +1019 -0
- package/labware/definitions/2/opentrons_96_wellplate_200ul_pcr_full_skirt/2.json +1045 -0
- package/labware/definitions/2/opentrons_aluminum_flat_bottom_plate/1.json +41 -0
- package/labware/definitions/2/opentrons_calibration_adapter_heatershaker_module/1.json +62 -0
- package/labware/definitions/2/opentrons_calibration_adapter_temperature_module/1.json +62 -0
- package/labware/definitions/2/opentrons_calibration_adapter_thermocycler_module/1.json +69 -0
- package/labware/definitions/2/opentrons_calibrationblock_short_side_left/1.json +71 -0
- package/labware/definitions/2/opentrons_calibrationblock_short_side_right/1.json +71 -0
- package/labware/definitions/2/opentrons_flex_96_filtertiprack_1000ul/1.json +1026 -0
- package/labware/definitions/2/opentrons_flex_96_filtertiprack_200ul/1.json +1026 -0
- package/labware/definitions/2/opentrons_flex_96_filtertiprack_50ul/1.json +1026 -0
- package/labware/definitions/2/opentrons_flex_96_tiprack_1000ul/1.json +1026 -0
- package/labware/definitions/2/opentrons_flex_96_tiprack_200ul/1.json +1026 -0
- package/labware/definitions/2/opentrons_flex_96_tiprack_50ul/1.json +1026 -0
- package/labware/definitions/2/opentrons_flex_96_tiprack_adapter/1.json +41 -0
- package/labware/definitions/2/opentrons_universal_flat_adapter/1.json +151 -0
- package/labware/definitions/2/opentrons_universal_flat_adapter_corning_384_wellplate_112ul_flat/1.json +4710 -0
- package/labware/definitions/2/thermoscientificnunc_96_wellplate_1300ul/1.json +1019 -0
- package/labware/definitions/2/thermoscientificnunc_96_wellplate_2000ul/1.json +1019 -0
- package/labware/definitions/2/tipone_96_tiprack_200ul/1.json +1017 -0
- package/labware/definitions/2/usascientific_12_reservoir_22ml/1.json +192 -0
- package/labware/definitions/2/usascientific_96_wellplate_2.4ml_deep/1.json +1116 -0
- package/labware/fixtures/2/fixture_12_trough.json +188 -0
- package/labware/fixtures/2/fixture_12_trough_v2.json +188 -0
- package/labware/fixtures/2/fixture_24_tuberack.json +295 -0
- package/labware/fixtures/2/fixture_384_plate.json +4316 -0
- package/labware/fixtures/2/fixture_96_plate.json +1015 -0
- package/labware/fixtures/2/fixture_flex_96_tiprack_1000ul.json +1026 -0
- package/labware/fixtures/2/fixture_flex_96_tiprack_adapter.json +41 -0
- package/labware/fixtures/2/fixture_irregular_example_1.json +600 -0
- package/labware/fixtures/2/fixture_overlappy_wellplate.json +1113 -0
- package/labware/fixtures/2/fixture_regular_example_1.json +57 -0
- package/labware/fixtures/2/fixture_regular_example_2.json +95 -0
- package/labware/fixtures/2/fixture_tiprack_1000_ul.json +1015 -0
- package/labware/fixtures/2/fixture_tiprack_10_ul.json +1015 -0
- package/labware/fixtures/2/fixture_tiprack_300_ul.json +1014 -0
- package/labware/fixtures/2/fixture_trash.json +50 -0
- package/labware/schemas/2.json +372 -0
- package/liquid/schemas/1.json +21 -0
- package/liquid/types/index.ts +5 -0
- package/module/definitions/1.json +57 -0
- package/module/definitions/2/magneticModuleV1.json +22 -0
- package/module/definitions/2/magneticModuleV2.json +69 -0
- package/module/definitions/2/temperatureModuleV1.json +22 -0
- package/module/definitions/2/temperatureModuleV2.json +69 -0
- package/module/definitions/2/thermocyclerModuleV1.json +23 -0
- package/module/definitions/3/heaterShakerModuleV1.json +521 -0
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- package/protocol/types/schemaV6/command/module.ts +302 -0
- package/protocol/types/schemaV6/command/pipetting.ts +114 -0
- package/protocol/types/schemaV6/command/setup.ts +127 -0
- package/protocol/types/schemaV6/command/timing.ts +58 -0
- package/protocol/types/schemaV6/index.ts +122 -0
- package/protocol/types/schemaV7/command/annotation.ts +37 -0
- package/protocol/types/schemaV7/command/calibration.ts +84 -0
- package/protocol/types/schemaV7/command/gantry.ts +154 -0
- package/protocol/types/schemaV7/command/incidental.ts +21 -0
- package/protocol/types/schemaV7/command/index.ts +76 -0
- package/protocol/types/schemaV7/command/module.ts +307 -0
- package/protocol/types/schemaV7/command/pipetting.ts +173 -0
- package/protocol/types/schemaV7/command/setup.ts +158 -0
- package/protocol/types/schemaV7/command/timing.ts +58 -0
- package/protocol/types/schemaV7/index.ts +98 -0
- package/protocol/types/schemaV8/index.ts +160 -0
- package/python/.coveragerc +4 -0
- package/python/.flake8 +32 -0
- package/python/Config.in +10 -0
- package/python/Makefile +134 -0
- package/python/Pipfile +28 -0
- package/python/Pipfile.lock +645 -0
- package/python/buildroot.mk +30 -0
- package/python/mypy.ini +41 -0
- package/python/opentrons_shared_data/__init__.py +17 -0
- package/python/opentrons_shared_data/_version.py +20 -0
- package/python/opentrons_shared_data/command/__init__.py +52 -0
- package/python/opentrons_shared_data/deck/__init__.py +96 -0
- package/python/opentrons_shared_data/deck/dev_types.py +180 -0
- package/python/opentrons_shared_data/errors/__init__.py +30 -0
- package/python/opentrons_shared_data/errors/categories.py +60 -0
- package/python/opentrons_shared_data/errors/codes.py +108 -0
- package/python/opentrons_shared_data/errors/exceptions.py +915 -0
- package/python/opentrons_shared_data/gripper/__init__.py +63 -0
- package/python/opentrons_shared_data/gripper/constants.py +5 -0
- package/python/opentrons_shared_data/gripper/gripper_definition.py +101 -0
- package/python/opentrons_shared_data/labware/__init__.py +22 -0
- package/python/opentrons_shared_data/labware/constants.py +7 -0
- package/python/opentrons_shared_data/labware/dev_types.py +140 -0
- package/python/opentrons_shared_data/labware/labware_definition.py +328 -0
- package/python/opentrons_shared_data/load.py +57 -0
- package/python/opentrons_shared_data/module/__init__.py +74 -0
- package/python/opentrons_shared_data/module/dev_types.py +141 -0
- package/python/opentrons_shared_data/pipette/__init__.py +107 -0
- package/python/opentrons_shared_data/pipette/dev_types.py +177 -0
- package/python/opentrons_shared_data/pipette/file_operation_helpers.py +37 -0
- package/python/opentrons_shared_data/pipette/load_data.py +261 -0
- package/python/opentrons_shared_data/pipette/model_constants.py +123 -0
- package/python/opentrons_shared_data/pipette/mutable_configurations.py +431 -0
- package/python/opentrons_shared_data/pipette/pipette_definition.py +503 -0
- package/python/opentrons_shared_data/pipette/pipette_load_name_conversions.py +236 -0
- package/python/opentrons_shared_data/pipette/scripts/__init__.py +0 -0
- package/python/opentrons_shared_data/pipette/scripts/build_json_script.py +469 -0
- package/python/opentrons_shared_data/pipette/scripts/update_configuration_files.py +450 -0
- package/python/opentrons_shared_data/pipette/types.py +193 -0
- package/python/opentrons_shared_data/protocol/__init__.py +13 -0
- package/python/opentrons_shared_data/protocol/constants.py +98 -0
- package/python/opentrons_shared_data/protocol/dev_types.py +436 -0
- package/python/opentrons_shared_data/protocol/models/__init__.py +48 -0
- package/python/opentrons_shared_data/protocol/models/protocol_schema_v6.py +145 -0
- package/python/opentrons_shared_data/protocol/models/protocol_schema_v7.py +95 -0
- package/python/opentrons_shared_data/protocol/models/protocol_schema_v8.py +108 -0
- package/python/opentrons_shared_data/protocol/models/shared_models.py +105 -0
- package/python/opentrons_shared_data/py.typed +0 -0
- package/python/opentrons_shared_data/robot/__init__.py +25 -0
- package/python/opentrons_shared_data/robot/dev_types.py +37 -0
- package/python/pytest.ini +2 -0
- package/python/setup.cfg +5 -0
- package/python/setup.py +179 -0
- package/python/tests/__init__.py +1 -0
- package/python/tests/conftest.py +0 -0
- package/python/tests/deck/__init__.py +0 -0
- package/python/tests/deck/test_list_names.py +12 -0
- package/python/tests/deck/test_position.py +113 -0
- package/python/tests/deck/test_typechecks.py +28 -0
- package/python/tests/errors/__init__.py +1 -0
- package/python/tests/errors/test_error_completeness.py +19 -0
- package/python/tests/errors/test_exceptions.py +74 -0
- package/python/tests/gripper/__init__.py +0 -0
- package/python/tests/gripper/test_definition.py +30 -0
- package/python/tests/gripper/test_load.py +16 -0
- package/python/tests/labware/__init__.py +13 -0
- package/python/tests/labware/test_typechecks.py +21 -0
- package/python/tests/module/__init__.py +20 -0
- package/python/tests/module/test_load.py +49 -0
- package/python/tests/module/test_typechecks.py +34 -0
- package/python/tests/pipette/__init__.py +0 -0
- package/python/tests/pipette/test_load_data.py +103 -0
- package/python/tests/pipette/test_mutable_configurations.py +266 -0
- package/python/tests/pipette/test_pipette_definition.py +183 -0
- package/python/tests/pipette/test_pipette_load_name_conversions.py +222 -0
- package/python/tests/pipette/test_typechecks.py +50 -0
- package/python/tests/pipette/test_validate_schema.py +37 -0
- package/python/tests/protocol/__init__.py +15 -0
- package/python/tests/protocol/test_protocol_schema_v6.py +107 -0
- package/python/tests/protocol/test_protocol_schema_v7.py +34 -0
- package/python/tests/protocol/test_protocol_schema_v8.py +20 -0
- package/python/tests/protocol/test_typechecks.py +36 -0
- package/python/tests/robot/__init__.py +0 -0
- package/python/tests/robot/test_typechecks.py +20 -0
- package/robot/definitions/1/ot2.json +5 -0
- package/robot/definitions/1/ot3.json +5 -0
- package/robot/schemas/1.json +30 -0
- package/tsconfig-data.json +24 -0
- package/tsconfig.json +17 -0
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import type { DeckSlotId, ModuleModel } from '../../js/types'
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import type {
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ProtocolFile as V3ProtocolFile,
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AspDispAirgapParams,
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BlowoutParams,
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TouchTipParams,
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PipetteAccessParams,
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MoveToSlotParams,
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DelayParams,
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} from './schemaV3'
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export type { BlowoutParams, FilePipette, FileLabware } from './schemaV3'
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export interface FileModule {
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slot: DeckSlotId
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model: ModuleModel
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}
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export interface EngageMagnetParams {
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module: string
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engageHeight: number
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}
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export interface TemperatureParams {
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module: string
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temperature: number
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}
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export interface AtomicProfileStep {
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holdTime: number
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temperature: number
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}
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export interface TCProfileParams {
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module: string
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profile: AtomicProfileStep[]
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volume: number
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}
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export interface ModuleOnlyParams {
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module: string
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}
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export interface ThermocyclerSetBlockTemperatureArgs {
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module: string
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temperature: number
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volume?: number
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}
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export type Command =
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| {
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command: 'aspirate' | 'dispense' | 'airGap'
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params: AspDispAirgapParams
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}
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| {
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command: 'blowout'
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params: BlowoutParams
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}
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| {
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command: 'touchTip'
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params: TouchTipParams
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}
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command: 'pickUpTip' | 'dropTip'
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params: PipetteAccessParams
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}
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command: 'moveToSlot'
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params: MoveToSlotParams
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}
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command: 'delay'
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params: DelayParams
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}
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| {
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command: 'magneticModule/engageMagnet'
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params: EngageMagnetParams
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}
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command: 'magneticModule/disengageMagnet'
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params: ModuleOnlyParams
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}
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command: 'temperatureModule/setTargetTemperature'
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params: TemperatureParams
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}
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| {
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command: 'temperatureModule/deactivate'
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params: ModuleOnlyParams
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}
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command: 'temperatureModule/awaitTemperature'
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params: TemperatureParams
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}
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| {
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command: 'thermocycler/setTargetBlockTemperature'
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params: ThermocyclerSetBlockTemperatureArgs
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}
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command: 'thermocycler/setTargetLidTemperature'
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params: TemperatureParams
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}
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command: 'thermocycler/awaitBlockTemperature'
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params: TemperatureParams
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}
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| {
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command: 'thermocycler/awaitLidTemperature'
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params: TemperatureParams
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}
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| {
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command: 'thermocycler/openLid'
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params: ModuleOnlyParams
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}
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| {
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command: 'thermocycler/closeLid'
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params: ModuleOnlyParams
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}
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| {
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command: 'thermocycler/deactivateBlock'
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params: ModuleOnlyParams
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}
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| {
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command: 'thermocycler/deactivateLid'
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params: ModuleOnlyParams
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}
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| {
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command: 'thermocycler/runProfile'
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params: TCProfileParams
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}
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| {
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command: 'thermocycler/awaitProfileComplete'
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params: ModuleOnlyParams
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}
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// NOTE: must be kept in sync with '../schemas/4.json'
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export interface ProtocolFile<DesignerApplicationData>
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extends Omit<
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V3ProtocolFile<DesignerApplicationData>,
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'schemaVersion' | 'commands'
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> {
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$otSharedSchema: '#/protocol/schemas/4'
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schemaVersion: 4
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modules: Record<string, FileModule>
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commands: Command[]
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}
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@@ -0,0 +1,34 @@
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import type { ProtocolFile as V3ProtocolFile } from './schemaV3'
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import type { Command as V4Command, FileModule } from './schemaV4'
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export interface MoveToWellParams {
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pipette: string
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labware: string
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well: string
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offset?: {
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x: number
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y: number
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z: number
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}
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minimumZHeight?: number
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forceDirect?: boolean
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}
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export type Command =
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| V4Command
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| {
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command: 'moveToWell'
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params: MoveToWellParams
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}
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// NOTE: must be kept in sync with '../schemas/5.json'
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export interface ProtocolFile<DesignerApplicationData>
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extends Omit<
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V3ProtocolFile<DesignerApplicationData>,
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'schemaVersion' | 'commands'
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> {
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$otSharedSchema: '#/protocol/schemas/5'
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schemaVersion: 5
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modules: Record<string, FileModule>
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commands: Command[]
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}
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@@ -0,0 +1,27 @@
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1
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/* NOTE: this file is only necessary until step-generation and protocol-designer
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* implement protocol schema V6. This file was orginally created when it was decided
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* that certain features of V6 schema were needed, but the actual making of said schema
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* was punted. Now that schema V6 does exist, this intermediate type that SG and PD support
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* can be phased out as the two are updated to the V6 schema support.
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*/
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7
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import type { ProtocolFile as V3ProtocolFile, AirGapParams } from './schemaV3'
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9
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import type { FileModule } from './schemaV4'
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10
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import type { Command as V5Command } from './schemaV5'
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12
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export type Command =
|
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13
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| V5Command
|
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14
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| {
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15
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command: 'dispenseAirGap'
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params: AirGapParams
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17
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}
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18
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|
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// NOTE: must be kept in sync with '../schemas/5.json'
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20
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export type ProtocolFile<
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21
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DesignerApplicationData
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> = V3ProtocolFile<DesignerApplicationData> & {
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$otSharedSchema: '#/protocol/schemas/5'
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24
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schemaVersion: 5
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25
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modules: Record<string, FileModule>
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26
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commands: Command[]
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27
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}
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@@ -0,0 +1,146 @@
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1
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import type { CommonCommandRunTimeInfo, CommonCommandCreateInfo } from '.'
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2
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import type { MotorAxis, Coordinates, MotorAxes } from '../../../../js/types'
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3
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|
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4
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export interface MoveToSlotCreateCommand extends CommonCommandCreateInfo {
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5
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commandType: 'moveToSlot'
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6
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params: MoveToSlotParams
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7
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}
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8
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export interface MoveToSlotRunTimeCommand
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9
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extends CommonCommandRunTimeInfo,
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10
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MoveToSlotCreateCommand {
|
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result?: {}
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12
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}
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13
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export interface MoveToWellCreateCommand extends CommonCommandCreateInfo {
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commandType: 'moveToWell'
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params: MoveToWellParams
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}
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17
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export interface MoveToWellRunTimeCommand
|
|
18
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extends CommonCommandRunTimeInfo,
|
|
19
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MoveToWellCreateCommand {
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20
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result?: {}
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21
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}
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22
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export interface MoveToCoordinatesCreateCommand
|
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23
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extends CommonCommandCreateInfo {
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24
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commandType: 'moveToCoordinates'
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params: MoveToCoordinatesParams
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26
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}
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27
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export interface MoveToCoordinatesRunTimeCommand
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|
28
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extends CommonCommandRunTimeInfo,
|
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29
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+
MoveToCoordinatesCreateCommand {
|
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30
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result?: {}
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31
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}
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32
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export interface MoveRelativeCreateCommand extends CommonCommandCreateInfo {
|
|
33
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commandType: 'moveRelative'
|
|
34
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params: MoveRelativeParams
|
|
35
|
+
}
|
|
36
|
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export interface MoveRelativeRunTimeCommand
|
|
37
|
+
extends CommonCommandRunTimeInfo,
|
|
38
|
+
MoveRelativeCreateCommand {
|
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39
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result?: {
|
|
40
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+
position: Coordinates
|
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41
|
+
}
|
|
42
|
+
}
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43
|
+
export interface SavePositionCreateCommand extends CommonCommandCreateInfo {
|
|
44
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+
commandType: 'savePosition'
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45
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+
params: SavePositionParams
|
|
46
|
+
}
|
|
47
|
+
export interface SavePositionRunTimeCommand
|
|
48
|
+
extends CommonCommandRunTimeInfo,
|
|
49
|
+
SavePositionCreateCommand {
|
|
50
|
+
result?: {
|
|
51
|
+
positionId: string
|
|
52
|
+
position: Coordinates
|
|
53
|
+
}
|
|
54
|
+
}
|
|
55
|
+
export interface HomeCreateCommand extends CommonCommandCreateInfo {
|
|
56
|
+
commandType: 'home'
|
|
57
|
+
params: HomeParams
|
|
58
|
+
}
|
|
59
|
+
export interface HomeRunTimeCommand
|
|
60
|
+
extends CommonCommandRunTimeInfo,
|
|
61
|
+
HomeCreateCommand {
|
|
62
|
+
result?: {}
|
|
63
|
+
}
|
|
64
|
+
export interface RetractAxisCreateCommand extends CommonCommandCreateInfo {
|
|
65
|
+
commandType: 'retractAxis'
|
|
66
|
+
params: RetractAxisParams
|
|
67
|
+
}
|
|
68
|
+
export interface RetractAxisRunTimeCommand
|
|
69
|
+
extends CommonCommandRunTimeInfo,
|
|
70
|
+
RetractAxisCreateCommand {
|
|
71
|
+
result?: {}
|
|
72
|
+
}
|
|
73
|
+
export type GantryRunTimeCommand =
|
|
74
|
+
| MoveToSlotRunTimeCommand
|
|
75
|
+
| MoveToWellRunTimeCommand
|
|
76
|
+
| MoveToCoordinatesRunTimeCommand
|
|
77
|
+
| MoveRelativeRunTimeCommand
|
|
78
|
+
| SavePositionRunTimeCommand
|
|
79
|
+
| HomeRunTimeCommand
|
|
80
|
+
| RetractAxisRunTimeCommand
|
|
81
|
+
export type GantryCreateCommand =
|
|
82
|
+
| MoveToSlotCreateCommand
|
|
83
|
+
| MoveToWellCreateCommand
|
|
84
|
+
| MoveToCoordinatesCreateCommand
|
|
85
|
+
| MoveRelativeCreateCommand
|
|
86
|
+
| SavePositionCreateCommand
|
|
87
|
+
| HomeCreateCommand
|
|
88
|
+
| RetractAxisCreateCommand
|
|
89
|
+
|
|
90
|
+
interface MoveToSlotParams {
|
|
91
|
+
pipetteId: string
|
|
92
|
+
slotName: string
|
|
93
|
+
offset?: {
|
|
94
|
+
x: number
|
|
95
|
+
y: number
|
|
96
|
+
z: number
|
|
97
|
+
}
|
|
98
|
+
minimumZHeight?: number
|
|
99
|
+
forceDirect?: boolean
|
|
100
|
+
}
|
|
101
|
+
|
|
102
|
+
export interface MoveToWellParams {
|
|
103
|
+
pipetteId: string
|
|
104
|
+
labwareId: string
|
|
105
|
+
wellName: string
|
|
106
|
+
wellLocation?: {
|
|
107
|
+
origin?: 'top' | 'bottom'
|
|
108
|
+
offset?: {
|
|
109
|
+
x?: number
|
|
110
|
+
y?: number
|
|
111
|
+
z?: number
|
|
112
|
+
}
|
|
113
|
+
}
|
|
114
|
+
minimumZHeight?: number
|
|
115
|
+
forceDirect?: boolean
|
|
116
|
+
}
|
|
117
|
+
|
|
118
|
+
interface MoveToCoordinatesParams {
|
|
119
|
+
pipetteId: string
|
|
120
|
+
coordinates: {
|
|
121
|
+
x: number
|
|
122
|
+
y: number
|
|
123
|
+
z: number
|
|
124
|
+
}
|
|
125
|
+
minimumZHeight?: number
|
|
126
|
+
forceDirect?: boolean
|
|
127
|
+
}
|
|
128
|
+
|
|
129
|
+
interface MoveRelativeParams {
|
|
130
|
+
pipetteId: string
|
|
131
|
+
axis: 'x' | 'y' | 'z'
|
|
132
|
+
distance: number
|
|
133
|
+
}
|
|
134
|
+
|
|
135
|
+
interface SavePositionParams {
|
|
136
|
+
pipetteId: string // pipette to use in measurement
|
|
137
|
+
positionId?: string // position ID, auto-assigned if left blank
|
|
138
|
+
}
|
|
139
|
+
|
|
140
|
+
interface HomeParams {
|
|
141
|
+
axes?: MotorAxes
|
|
142
|
+
}
|
|
143
|
+
|
|
144
|
+
interface RetractAxisParams {
|
|
145
|
+
axis: MotorAxis
|
|
146
|
+
}
|
|
@@ -0,0 +1,65 @@
|
|
|
1
|
+
import type {
|
|
2
|
+
PipettingRunTimeCommand,
|
|
3
|
+
PipettingCreateCommand,
|
|
4
|
+
} from './pipetting'
|
|
5
|
+
import type { GantryRunTimeCommand, GantryCreateCommand } from './gantry'
|
|
6
|
+
import type { ModuleRunTimeCommand, ModuleCreateCommand } from './module'
|
|
7
|
+
import type { SetupRunTimeCommand, SetupCreateCommand } from './setup'
|
|
8
|
+
import type { TimingRunTimeCommand, TimingCreateCommand } from './timing'
|
|
9
|
+
|
|
10
|
+
export * from './pipetting'
|
|
11
|
+
export * from './gantry'
|
|
12
|
+
export * from './module'
|
|
13
|
+
export * from './setup'
|
|
14
|
+
export * from './timing'
|
|
15
|
+
|
|
16
|
+
// NOTE: these key/value pairs will only be present on commands at analysis/run time
|
|
17
|
+
// they pertain only to the actual execution status of a command on hardware, as opposed to
|
|
18
|
+
// the command's identity and parameters which can be known prior to runtime
|
|
19
|
+
|
|
20
|
+
export type CommandStatus = 'queued' | 'running' | 'succeeded' | 'failed'
|
|
21
|
+
export interface CommonCommandRunTimeInfo {
|
|
22
|
+
key?: string
|
|
23
|
+
id: string
|
|
24
|
+
status: CommandStatus
|
|
25
|
+
error?: RunCommandError | null
|
|
26
|
+
createdAt: string
|
|
27
|
+
startedAt: string | null
|
|
28
|
+
completedAt: string | null
|
|
29
|
+
intent?: 'protocol' | 'setup'
|
|
30
|
+
}
|
|
31
|
+
export interface CommonCommandCreateInfo {
|
|
32
|
+
key?: string
|
|
33
|
+
meta?: { [key: string]: any }
|
|
34
|
+
}
|
|
35
|
+
|
|
36
|
+
export type CreateCommand =
|
|
37
|
+
| PipettingCreateCommand // involves the pipettes plunger motor
|
|
38
|
+
| GantryCreateCommand // movement that only effects the x,y,z position of the gantry/pipette
|
|
39
|
+
| ModuleCreateCommand // directed at a hardware module
|
|
40
|
+
| SetupCreateCommand // only effecting robot's equipment setup (pipettes, labware, modules, liquid), no hardware side-effects
|
|
41
|
+
| TimingCreateCommand // effecting the timing of command execution
|
|
42
|
+
| ({
|
|
43
|
+
commandType: 'custom'
|
|
44
|
+
params: { [key: string]: any }
|
|
45
|
+
} & CommonCommandCreateInfo) // allows for experimentation between schema versions with no expectation of system support
|
|
46
|
+
|
|
47
|
+
// commands will be required to have a key, but will not be created with one
|
|
48
|
+
export type RunTimeCommand =
|
|
49
|
+
| PipettingRunTimeCommand // involves the pipettes plunger motor
|
|
50
|
+
| GantryRunTimeCommand // movement that only effects the x,y,z position of the gantry/pipette
|
|
51
|
+
| ModuleRunTimeCommand // directed at a hardware module
|
|
52
|
+
| SetupRunTimeCommand // only effecting robot's equipment setup (pipettes, labware, modules, liquid), no hardware side-effects
|
|
53
|
+
| TimingRunTimeCommand // effecting the timing of command execution
|
|
54
|
+
| ({
|
|
55
|
+
commandType: 'custom'
|
|
56
|
+
params: { [key: string]: any }
|
|
57
|
+
result?: any
|
|
58
|
+
} & CommonCommandRunTimeInfo) // allows for experimentation between schema versions with no expectation of system support
|
|
59
|
+
|
|
60
|
+
interface RunCommandError {
|
|
61
|
+
id: string
|
|
62
|
+
errorType: string
|
|
63
|
+
createdAt: string
|
|
64
|
+
detail: string
|
|
65
|
+
}
|