@openrig/cli 0.5.2 → 0.5.3

package/node_modules/@openrig/daemon/dist/domain/codex-thread-id.js

@@ -31,6 +31,150 @@ export function readCodexThreadIdFromCandidateHomes(pid, candidateHomes, exists)
     }
     return undefined;
 }
+/**
+ * OPR.0.5.3.10 (addendum) — thread-id resolution WITHOUT the per-call PID-home
+ * subprocess. The measured amplifier: 298 `codex_thread_id.resolve_home` spans
+ * in the last 500 slow spans (mean 8.24s, max 36.72s) — a `ps eww` per pid,
+ * per attempt, per tick, when nearly every codex seat's logs live under the
+ * DEFAULT home.
+ *
+ * Order of costs:
+ *   1. DEFAULT home first — a pure file/sqlite read, ZERO subprocess. Hit = done.
+ *   2. Bounded PID-keyed cache of previously RESOLVED non-default homes — a
+ *      pid's HOME does not change for the life of the process. Hit = file read.
+ *   3. Only then the subprocess resolver — and its SUCCESS is cached (bounded,
+ *      FIFO eviction). A FAILED resolution is never cached: the next call may
+ *      retry (a dying `ps` under load must not poison the pid).
+ */
+export class CodexThreadIdResolver {
+    opts;
+    /** Bounded (pid,identity)→home cache of SUCCESSFUL resolutions — INCLUDING
+     *  the default home (a stable default-home pid with no thread log must not
+     *  re-run `ps eww` every poll). KEYED BY IDENTITY (r2 round-3): a reused
+     *  pid carries a different startedAt, so it structurally MISSES the retired
+     *  occupant's entry — no read-time mismatch check to get wrong, and a late
+     *  stale-probe completion writes only its own key, never clobbering the
+     *  newer occupant's.
+     *
+     *  SETTLED entries never time-expire (e91d7a94 — the expiry-herd fix): a
+     *  probe that STARTED strictly after the identity's lstart second closed
+     *  observed the FINAL occupant of this (pid, lstart) key — same-pid
+     *  same-second reuse is impossible once the second passes, and a live
+     *  process's HOME cannot change — so the answer is valid for the key's
+     *  lifetime and is removed only by identity mismatch (a new key) or FIFO
+     *  size eviction. Probe START time is the predicate, NOT completion time
+     *  (orch-lead 22:39Z): a probe started inside the second can observe the
+     *  retired occupant and complete after it. UNSETTLED entries — probe
+     *  started inside the ambiguous second, unparseable identity, or
+     *  identity-less callers — expire after homeTtlMs (r2-B1/W-5.3-1): the
+     *  TTL is their staleness bound and the finite recovery path for the
+     *  same-second collision. */
+    homeByKey = new Map();
+    /** In-flight home resolution, keyed by pid+IDENTITY (r2 round-3): a known
+     *  identity must never join a probe belonging to a different or
+     *  identity-less occupant — under the measured 8-36s probes a pid can be
+     *  reused MID-PROBE, and pid-only coalescing handed the new occupant the
+     *  retired occupant's answer before the completed-cache check could run.
+     *  Same (pid, identity) still coalesces onto ONE subprocess; a failure
+     *  rejects all waiters of that key and caches nothing. */
+    inFlightByKey = new Map();
+    constructor(opts = {}) {
+        this.opts = opts;
+    }
+    /**
+     * Resolve a codex thread id for `pid`. IDENTITY IS REQUIRED (S10 follow-on, r1 owed item 3): the
+     * identity's start time gates every log read, so a retired occupant's rows never resolve for a
+     * reused pid. The ungated read — the pre-round-4 class S10 eliminated, safe today only by
+     * call-graph discipline — is reachable ONLY via resolveUngatedLegacy, so a NEW identity-less
+     * call site is a COMPILE error (the review-visible pin; see the codex-thread-id test).
+     */
+    async resolve(pid, identity) {
+        return this.resolveInternal(pid, identity);
+    }
+    /**
+     * EXPLICIT ungated escape hatch — reads WITHOUT the identity start-time gate (a reused pid can
+     * match a retired occupant's rows). Use ONLY for genuinely identity-less callers (tests, adoption
+     * paths that carry no census identity). Every new identity-less read must NAME this method; do
+     * not re-open resolve() to an optional identity. By construction its cache entries can never be
+     * SETTLED: it delegates with identity=undefined, so minTs is undefined, the settled predicate is
+     * false, and every entry it writes stays bounded by homeTtlMs (60s) — see the settled-permanence
+     * rule (e91d7a94) on the cache above.
+     */
+    async resolveUngatedLegacy(pid) {
+        return this.resolveInternal(pid, undefined);
+    }
+    async resolveInternal(pid, identity) {
+        // r2 round-4: the identity's start time gates EVERY log read — a retired
+        // occupant's rows predate the current occupant's start and never match.
+        const minTs = lstartToMinTs(identity);
+        const readFromLogs = this.opts.readFromLogs
+            ?? ((p, home) => readCodexThreadIdFromLogs(p, home, undefined, minTs));
+        const defaultHome = this.opts.defaultHome ?? safeUserHomeDir() ?? os.homedir();
+        const now = this.opts.now ?? Date.now;
+        const ttl = this.opts.homeTtlMs ?? 60_000;
+        // 1. Default home: no subprocess.
+        const fromDefault = readFromLogs(pid, defaultHome);
+        if (fromDefault)
+            return fromDefault;
+        // 2. FRESH cached home for this (pid, identity): no subprocess. A reused
+        //    pid carries a new identity and structurally MISSES here (r1's
+        //    remedy); identity-less callers get their own TTL-bounded slot. A
+        //    cached DEFAULT means the subprocess already answered "default" once
+        //    — step 1 covered it.
+        const key = `${pid}|${identity ?? ""}`;
+        const cached = this.homeByKey.get(key);
+        if (cached) {
+            if (cached.settled || now() - cached.at <= ttl) {
+                return cached.home === defaultHome ? undefined : readFromLogs(pid, cached.home);
+            }
+            this.homeByKey.delete(key);
+        }
+        // 3. Subprocess resolution, coalesced by the SAME (pid, identity) key:
+        //    only callers holding the same identity share a probe (r2 round-3 —
+        //    under the measured 8-36s probes a pid can be reused MID-PROBE, and
+        //    pid-only coalescing handed the new occupant the retired occupant's
+        //    answer). A completion writes only its own key, so a late stale
+        //    probe never clobbers the newer occupant's entry.
+        const inFlight = this.inFlightByKey.get(key);
+        const homePromise = inFlight ?? (() => {
+            const resolver = this.opts.resolveHomeDirByPid ?? defaultResolveHomeDirByPid;
+            // Settledness is decided by the probe's START time (orch-lead 22:39Z):
+            // only a probe started strictly AFTER the identity's lstart second
+            // closed is guaranteed to observe the final occupant of this key. A
+            // deferred probe that started inside the second may describe the
+            // retired occupant even if it completes later, so its entry keeps the
+            // short TTL. Coalesced waiters inherit the ORIGINAL probe's verdict.
+            const settled = minTs !== undefined && now() >= (minTs + 1) * 1000;
+            const p = Promise.resolve(resolver(pid)).then((home) => {
+                this.inFlightByKey.delete(key);
+                if (home)
+                    this.cacheHome(key, home, settled);
+                return home;
+            }, (err) => {
+                // Honest failure: nothing cached, next call retries.
+                this.inFlightByKey.delete(key);
+                throw err;
+            });
+            this.inFlightByKey.set(key, p);
+            return p;
+        })();
+        const home = await homePromise;
+        if (!home || home === defaultHome)
+            return undefined;
+        return readFromLogs(pid, home);
+    }
+    cacheHome(key, home, settled) {
+        const max = this.opts.maxCachedPids ?? 256;
+        if (!this.homeByKey.has(key) && this.homeByKey.size >= max) {
+            const oldest = this.homeByKey.keys().next().value;
+            if (oldest !== undefined)
+                this.homeByKey.delete(oldest);
+        }
+        this.homeByKey.set(key, { home, at: (this.opts.now ?? Date.now)(), settled });
+    }
+}
+const _resolveRequiresIdentityPin = true;
+void _resolveRequiresIdentityPin;
 function uniqueHomes(candidateHomes) {
     const homes = candidateHomes.filter((home) => Boolean(home));
     const userHome = safeUserHomeDir();
@@ -46,7 +190,12 @@ function safeUserHomeDir() {
         return undefined;
     }
 }
-function readCodexThreadIdFromLogs(pid, homeDir, exists) {
+function readCodexThreadIdFromLogs(pid, homeDir, exists, minTs) {
+    // OPR.0.5.3.10 r2 round-4 — the logs key is pid:<pid>:<opaque-uuid>, so a
+    // pid-only read can return a RETIRED occupant's row to a reused pid. When
+    // the caller knows the current occupant's start time (minTs, epoch
+    // seconds), only rows written strictly AFTER its start second are provably that occupant's. Identity-less
+    // callers keep the legacy unbounded read.
     for (const dbPath of resolveCodexLogDbPaths(homeDir, exists)) {
         try {
             const db = new Database(dbPath, { readonly: true });
@@ -55,8 +204,9 @@ function readCodexThreadIdFromLogs(pid, homeDir, exists) {
            FROM logs
            WHERE process_uuid LIKE ?
              AND thread_id IS NOT NULL
+             AND ts > ?
            ORDER BY ts DESC, ts_nanos DESC, id DESC
-           LIMIT 1`).get(`pid:${pid}:%`);
+           LIMIT 1`).get(`pid:${pid}:%`, minTs ?? 0);
                 if (row?.thread_id) {
                     return row.thread_id;
                 }
@@ -71,6 +221,25 @@ function readCodexThreadIdFromLogs(pid, homeDir, exists) {
     }
     return undefined;
 }
+/** Parse `ps lstart` ("Sun Aug 23 19:30:00 2026", local time) to epoch
+ *  SECONDS. The reader gates STRICTLY (`ts > startTs`, r2 round-6): lstart
+ *  carries no subsecond component, so ownership of a row INSIDE the start
+ *  second is undecidable — retired A can log at ts == B.startTs in the same
+ *  second B reuses the pid. The ambiguous second fails CLOSED (honest
+ *  INDETERMINATE; a genuinely-current same-second row resolves one poll
+ *  later), rows after it resolve. Unparseable → undefined (the caller falls
+ *  back to the ungated read rather than inventing a gate). */
+export function lstartToMinTs(identity) {
+    if (!identity)
+        return undefined;
+    const m = identity.match(/^\w{3}\s+(\w{3})\s+(\d+)\s+(\d{2}:\d{2}:\d{2})\s+(\d{4})$/);
+    if (!m)
+        return undefined;
+    const parsed = Date.parse(`${m[1]} ${m[2]}, ${m[4]} ${m[3]}`);
+    if (Number.isNaN(parsed))
+        return undefined;
+    return Math.floor(parsed / 1000);
+}
 function resolveCodexLogDbPaths(homeDir, exists) {
     const codexDir = nodePath.join(homeDir, ".codex");
     const discovered = [];

package/node_modules/@openrig/daemon/dist/domain/codex-thread-id.js.map

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package/node_modules/@openrig/daemon/dist/domain/context-packs/context-pack-types.d.ts

@@ -7,6 +7,52 @@ export interface ContextPackManifestFile {
     /** One-line description rendered in the review pane and bundle frame. */
     summary?: string;
 }
+export declare const ATOM_TAXONOMIES: readonly ["world", "lore", "skills", "mission"];
+export declare const ATOM_REGIONS: readonly ["identity", "ontology", "terrain", "actors", "laws", "history", "state", "affordances"];
+export declare const ATOM_SITUATIONS: readonly ["fresh", "handover", "post-compaction"];
+export declare const ATOM_PURPOSES: readonly ["depth", "width"];
+export declare const ATOM_RUNTIMES: readonly ["claude", "codex", "any"];
+export declare const ATOM_PRIORITIES: readonly ["core", "recommended", "optional"];
+/** An install ATOM (OPR.0.5.3.5 mini-req 1): an ADDRESS plus composition
+ *  metadata, never a new file — fresh/handover/post-compaction all compose
+ *  addresses into the same bytes, so there is no second copy to drift
+ *  (mini-req 5 by construction). Token counts are DERIVED at compose time,
+ *  never stored here (volatility x consequence rule). */
+export interface ContextPackAtom {
+    /** Stable slug — the join key for order/requires/probes. */
+    id: string;
+    /** `file` or `file#H2-slug/H3-slug` (the Atom-1 grammar); the file must be
+     *  one of the manifest's declared files, and a header path requires a
+     *  markdown file. */
+    address: string;
+    taxonomy: (typeof ATOM_TAXONOMIES)[number];
+    /** World-anatomy tags — enables compose-by-region (the measured
+     *  post-compaction need was width: affordances + terrain). */
+    regions?: Array<(typeof ATOM_REGIONS)[number]>;
+    /** The composition algebra's selector; never empty. */
+    situations: Array<(typeof ATOM_SITUATIONS)[number]>;
+    purpose: (typeof ATOM_PURPOSES)[number];
+    /** Mini-req 3: never assume identical compaction loss. Default "any". */
+    runtime: (typeof ATOM_RUNTIMES)[number];
+    /** Position within the base walk — absorption depends on sequence. */
+    order: number;
+    /** Dependency edges; a subset profile must close over them. Declared ids
+     *  only, no self-reference, no cycles. */
+    requires?: string[];
+    /** What drops FIRST when a token budget binds (mini-req 9). */
+    priority: (typeof ATOM_PRIORITIES)[number];
+    /** Mini-req 2: acceptance is CHANGED BEHAVIOR — a natural prompt plus the
+     *  expected observable behavior. Q3 bridge: the shape reconciles with the
+     *  harness's EvalCase — optional compilable expectedPatterns (the
+     *  deterministic door leg) and a 1-5 rubric (the judged leg); `expect`
+     *  stays the required prose contract. Closed key set at ingest. */
+    probe?: {
+        prompt: string;
+        expect: string;
+        expectedPatterns?: string[];
+        rubric?: string;
+    };
+}
 export interface ContextPackManifest {
     name: string;
     version: string;
@@ -16,6 +62,8 @@ export interface ContextPackManifest {
      *  estimate is available); the library service computes a derived
      *  `derivedEstimatedTokens` from actual file sizes for display. */
     estimatedTokens?: number;
+    /** OPR.0.5.3.5 mini-req 1 — install atoms with composition metadata. */
+    atoms?: ContextPackAtom[];
 }
 export type ContextPackSourceType = "builtin" | "user_file" | "workspace";
 /** Library-shaped record emitted by ContextPackLibraryService. */

package/node_modules/@openrig/daemon/dist/domain/context-packs/context-pack-types.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"context-pack-types.d.ts","sourceRoot":"","sources":["../../../src/domain/context-packs/context-pack-types.ts"],"names":[],"mappings":"AAYA,MAAM,WAAW,uBAAuB;IACtC,+CAA+C;IAC/C,IAAI,EAAE,MAAM,CAAC;IACb;wEACoE;IACpE,IAAI,EAAE,MAAM,CAAC;IACb,yEAAyE;IACzE,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAED,MAAM,WAAW,mBAAmB;IAClC,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,KAAK,EAAE,uBAAuB,EAAE,CAAC;IACjC;;uEAEmE;IACnE,eAAe,CAAC,EAAE,MAAM,CAAC;CAC1B;AAED,MAAM,MAAM,qBAAqB,GAAG,SAAS,GAAG,WAAW,GAAG,WAAW,CAAC;AAE1E,kEAAkE;AAClE,MAAM,WAAW,gBAAgB;IAC/B;2CACuC;IACvC,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,cAAc,CAAC;IACrB,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;IACvB,UAAU,EAAE,qBAAqB,CAAC;IAClC,2CAA2C;IAC3C,UAAU,EAAE,MAAM,CAAC;IACnB,gEAAgE;IAChE,YAAY,EAAE,MAAM,CAAC;IACrB;qEACiE;IACjE,SAAS,EAAE,MAAM,CAAC;IAClB,6DAA6D;IAC7D,uBAAuB,EAAE,MAAM,GAAG,IAAI,CAAC;IACvC;oEACgE;IAChE,sBAAsB,EAAE,MAAM,CAAC;IAC/B,qEAAqE;IACrE,KAAK,EAAE,oBAAoB,EAAE,CAAC;CAC/B;AAED,MAAM,WAAW,oBAAoB;IACnC,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;IACvB;;oDAEgD;IAChD,YAAY,EAAE,MAAM,GAAG,IAAI,CAAC;IAC5B,2DAA2D;IAC3D,KAAK,EAAE,MAAM,GAAG,IAAI,CAAC;IACrB,kEAAkE;IAClE,eAAe,EAAE,MAAM,GAAG,IAAI,CAAC;CAChC;AAED,qBAAa,gBAAiB,SAAQ,KAAK;aAEvB,IAAI,EAChB,kBAAkB,GAClB,sBAAsB,GACtB,kBAAkB,GAClB,gBAAgB,GAChB,mBAAmB,GACnB,kBAAkB,GAGlB,YAAY,GAEZ,eAAe,GACf,aAAa,GACb,qBAAqB,GACrB,sBAAsB,GACtB,mBAAmB,GACnB,mBAAmB,GAInB,oBAAoB;aAER,OAAO,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC;gBAtBjC,IAAI,EAChB,kBAAkB,GAClB,sBAAsB,GACtB,kBAAkB,GAClB,gBAAgB,GAChB,mBAAmB,GACnB,kBAAkB,GAGlB,YAAY,GAEZ,eAAe,GACf,aAAa,GACb,qBAAqB,GACrB,sBAAsB,GACtB,mBAAmB,GACnB,mBAAmB,GAInB,oBAAoB,EACxB,OAAO,EAAE,MAAM,EACC,OAAO,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,YAAA;CAKpD"}
+{"version":3,"file":"context-pack-types.d.ts","sourceRoot":"","sources":["../../../src/domain/context-packs/context-pack-types.ts"],"names":[],"mappings":"AAYA,MAAM,WAAW,uBAAuB;IACtC,+CAA+C;IAC/C,IAAI,EAAE,MAAM,CAAC;IACb;wEACoE;IACpE,IAAI,EAAE,MAAM,CAAC;IACb,yEAAyE;IACzE,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAID,eAAO,MAAM,eAAe,iDAAkD,CAAC;AAC/E,eAAO,MAAM,YAAY,mGAAoG,CAAC;AAC9H,eAAO,MAAM,eAAe,mDAAoD,CAAC;AACjF,eAAO,MAAM,aAAa,6BAA8B,CAAC;AACzD,eAAO,MAAM,aAAa,qCAAsC,CAAC;AACjE,eAAO,MAAM,eAAe,8CAA+C,CAAC;AAE5E;;;;yDAIyD;AACzD,MAAM,WAAW,eAAe;IAC9B,4DAA4D;IAC5D,EAAE,EAAE,MAAM,CAAC;IACX;;yBAEqB;IACrB,OAAO,EAAE,MAAM,CAAC;IAChB,QAAQ,EAAE,CAAC,OAAO,eAAe,CAAC,CAAC,MAAM,CAAC,CAAC;IAC3C;kEAC8D;IAC9D,OAAO,CAAC,EAAE,KAAK,CAAC,CAAC,OAAO,YAAY,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC;IAC/C,uDAAuD;IACvD,UAAU,EAAE,KAAK,CAAC,CAAC,OAAO,eAAe,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC;IACpD,OAAO,EAAE,CAAC,OAAO,aAAa,CAAC,CAAC,MAAM,CAAC,CAAC;IACxC,yEAAyE;IACzE,OAAO,EAAE,CAAC,OAAO,aAAa,CAAC,CAAC,MAAM,CAAC,CAAC;IACxC,sEAAsE;IACtE,KAAK,EAAE,MAAM,CAAC;IACd;8CAC0C;IAC1C,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAC;IACpB,+DAA+D;IAC/D,QAAQ,EAAE,CAAC,OAAO,eAAe,CAAC,CAAC,MAAM,CAAC,CAAC;IAC3C;;;;uEAImE;IACnE,KAAK,CAAC,EAAE;QAAE,MAAM,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAC;QAAC,gBAAgB,CAAC,EAAE,MAAM,EAAE,CAAC;QAAC,MAAM,CAAC,EAAE,MAAM,CAAA;KAAE,CAAC;CAC1F;AAED,MAAM,WAAW,mBAAmB;IAClC,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,KAAK,EAAE,uBAAuB,EAAE,CAAC;IACjC;;uEAEmE;IACnE,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,wEAAwE;IACxE,KAAK,CAAC,EAAE,eAAe,EAAE,CAAC;CAC3B;AAED,MAAM,MAAM,qBAAqB,GAAG,SAAS,GAAG,WAAW,GAAG,WAAW,CAAC;AAE1E,kEAAkE;AAClE,MAAM,WAAW,gBAAgB;IAC/B;2CACuC;IACvC,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,cAAc,CAAC;IACrB,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;IACvB,UAAU,EAAE,qBAAqB,CAAC;IAClC,2CAA2C;IAC3C,UAAU,EAAE,MAAM,CAAC;IACnB,gEAAgE;IAChE,YAAY,EAAE,MAAM,CAAC;IACrB;qEACiE;IACjE,SAAS,EAAE,MAAM,CAAC;IAClB,6DAA6D;IAC7D,uBAAuB,EAAE,MAAM,GAAG,IAAI,CAAC;IACvC;oEACgE;IAChE,sBAAsB,EAAE,MAAM,CAAC;IAC/B,qEAAqE;IACrE,KAAK,EAAE,oBAAoB,EAAE,CAAC;CAC/B;AAED,MAAM,WAAW,oBAAoB;IACnC,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;IACvB;;oDAEgD;IAChD,YAAY,EAAE,MAAM,GAAG,IAAI,CAAC;IAC5B,2DAA2D;IAC3D,KAAK,EAAE,MAAM,GAAG,IAAI,CAAC;IACrB,kEAAkE;IAClE,eAAe,EAAE,MAAM,GAAG,IAAI,CAAC;CAChC;AAED,qBAAa,gBAAiB,SAAQ,KAAK;aAEvB,IAAI,EAChB,kBAAkB,GAClB,sBAAsB,GACtB,kBAAkB,GAClB,gBAAgB,GAChB,mBAAmB,GACnB,kBAAkB,GAGlB,YAAY,GAEZ,eAAe,GACf,aAAa,GACb,qBAAqB,GACrB,sBAAsB,GACtB,mBAAmB,GACnB,mBAAmB,GAInB,oBAAoB;aAER,OAAO,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC;gBAtBjC,IAAI,EAChB,kBAAkB,GAClB,sBAAsB,GACtB,kBAAkB,GAClB,gBAAgB,GAChB,mBAAmB,GACnB,kBAAkB,GAGlB,YAAY,GAEZ,eAAe,GACf,aAAa,GACb,qBAAqB,GACrB,sBAAsB,GACtB,mBAAmB,GACnB,mBAAmB,GAInB,oBAAoB,EACxB,OAAO,EAAE,MAAM,EACC,OAAO,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,YAAA;CAKpD"}

package/node_modules/@openrig/daemon/dist/domain/context-packs/context-pack-types.js

@@ -9,6 +9,14 @@
 // ~/.openrig/context-packs/<name>/ (host) + workspace-local
 // .openrig/context-packs/<name>/. NO new SQLite tables; library cache
 // is in-memory at the daemon scope.
+// OPR.0.5.3.5 mini-req 1 — the founder taxonomy and world anatomy the atom
+// schema speaks (SPEC.md design context; intake DESIGN-INTAKE-ATOM-SCHEMA).
+export const ATOM_TAXONOMIES = ["world", "lore", "skills", "mission"];
+export const ATOM_REGIONS = ["identity", "ontology", "terrain", "actors", "laws", "history", "state", "affordances"];
+export const ATOM_SITUATIONS = ["fresh", "handover", "post-compaction"];
+export const ATOM_PURPOSES = ["depth", "width"];
+export const ATOM_RUNTIMES = ["claude", "codex", "any"];
+export const ATOM_PRIORITIES = ["core", "recommended", "optional"];
 export class ContextPackError extends Error {
     code;
     details;

package/node_modules/@openrig/daemon/dist/domain/context-packs/context-pack-types.js.map

@@ -1 +1 @@
-{"version":3,"file":"context-pack-types.js","sourceRoot":"","sources":["../../../src/domain/context-packs/context-pack-types.ts"],"names":[],"mappings":"AAAA,2EAA2E;AAC3E,gBAAgB;AAChB,EAAE;AACF,sEAAsE;AACtE,wEAAwE;AACxE,sEAAsE;AACtE,EAAE;AACF,2DAA2D;AAC3D,4DAA4D;AAC5D,sEAAsE;AACtE,oCAAoC;AAiEpC,MAAM,OAAO,gBAAiB,SAAQ,KAAK;IAEvB;IAsBA;IAvBlB,YACkB,IAoBQ,EACxB,OAAe,EACC,OAAiC;QAEjD,KAAK,CAAC,OAAO,CAAC,CAAC;QAxBC,SAAI,GAAJ,IAAI,CAoBI;QAER,YAAO,GAAP,OAAO,CAA0B;QAGjD,IAAI,CAAC,IAAI,GAAG,kBAAkB,CAAC;IACjC,CAAC;CACF"}
+{"version":3,"file":"context-pack-types.js","sourceRoot":"","sources":["../../../src/domain/context-packs/context-pack-types.ts"],"names":[],"mappings":"AAAA,2EAA2E;AAC3E,gBAAgB;AAChB,EAAE;AACF,sEAAsE;AACtE,wEAAwE;AACxE,sEAAsE;AACtE,EAAE;AACF,2DAA2D;AAC3D,4DAA4D;AAC5D,sEAAsE;AACtE,oCAAoC;AAYpC,2EAA2E;AAC3E,4EAA4E;AAC5E,MAAM,CAAC,MAAM,eAAe,GAAG,CAAC,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,SAAS,CAAU,CAAC;AAC/E,MAAM,CAAC,MAAM,YAAY,GAAG,CAAC,UAAU,EAAE,UAAU,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,EAAE,SAAS,EAAE,OAAO,EAAE,aAAa,CAAU,CAAC;AAC9H,MAAM,CAAC,MAAM,eAAe,GAAG,CAAC,OAAO,EAAE,UAAU,EAAE,iBAAiB,CAAU,CAAC;AACjF,MAAM,CAAC,MAAM,aAAa,GAAG,CAAC,OAAO,EAAE,OAAO,CAAU,CAAC;AACzD,MAAM,CAAC,MAAM,aAAa,GAAG,CAAC,QAAQ,EAAE,OAAO,EAAE,KAAK,CAAU,CAAC;AACjE,MAAM,CAAC,MAAM,eAAe,GAAG,CAAC,MAAM,EAAE,aAAa,EAAE,UAAU,CAAU,CAAC;AA6F5E,MAAM,OAAO,gBAAiB,SAAQ,KAAK;IAEvB;IAsBA;IAvBlB,YACkB,IAoBQ,EACxB,OAAe,EACC,OAAiC;QAEjD,KAAK,CAAC,OAAO,CAAC,CAAC;QAxBC,SAAI,GAAJ,IAAI,CAoBI;QAER,YAAO,GAAP,OAAO,CAA0B;QAGjD,IAAI,CAAC,IAAI,GAAG,kBAAkB,CAAC;IACjC,CAAC;CACF"}

package/node_modules/@openrig/daemon/dist/domain/context-packs/manifest-parser.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"manifest-parser.d.ts","sourceRoot":"","sources":["../../../src/domain/context-packs/manifest-parser.ts"],"names":[],"mappings":"AAQA,OAAO,EAAoB,KAAK,mBAAmB,EAAgC,MAAM,yBAAyB,CAAC;AAKnH,wBAAgB,aAAa,CAAC,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,mBAAmB,CA0HtF"}
+{"version":3,"file":"manifest-parser.d.ts","sourceRoot":"","sources":["../../../src/domain/context-packs/manifest-parser.ts"],"names":[],"mappings":"AAQA,OAAO,EASL,KAAK,mBAAmB,EAEzB,MAAM,yBAAyB,CAAC;AAYjC,wBAAgB,aAAa,CAAC,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,mBAAmB,CA6HtF"}

package/node_modules/@openrig/daemon/dist/domain/context-packs/manifest-parser.js

@@ -5,9 +5,16 @@
 // shape with structured-error rejects on malformed input. Pure
 // (no fs touches in the parser itself; caller hands in raw YAML).
 import { parse as parseYaml } from "yaml";
-import { ContextPackError } from "./context-pack-types.js";
+import { ATOM_PRIORITIES, ATOM_PURPOSES, ATOM_REGIONS, ATOM_RUNTIMES, ATOM_SITUATIONS, ATOM_TAXONOMIES, ContextPackError, } from "./context-pack-types.js";
 import { isSafePackVersion } from "./ref-safety.js";
-const ALLOWED_FILE_SUFFIXES = [".md", ".markdown", ".yaml", ".yml", ".txt"];
+import { AddressResolutionError, parseAddress } from "../markdown-address.js";
+import { parseSourceRef, SourceResolutionError } from "./profile-source-resolver.js";
+// Served as UTF-8 bundle text. `.sh`/`.ts` (OPR.0.5.3.7 R2) carry canonical skill
+// helper assets the served prose references (e.g. find-polluter.sh,
+// condition-based-waiting-example.ts) — text content, never executed. An unlisted
+// suffix still rejects loud, so a genuinely new pack file type fails at ingest
+// rather than serving a silently-incomplete bundle.
+const ALLOWED_FILE_SUFFIXES = [".md", ".markdown", ".yaml", ".yml", ".txt", ".sh", ".ts"];
 export function parseManifest(rawYaml, sourcePath) {
     let parsed;
     try {
@@ -74,12 +81,237 @@ export function parseManifest(rawYaml, sourcePath) {
     const estimatedTokens = typeof estimatedTokensRaw === "number" && Number.isFinite(estimatedTokensRaw)
         ? Math.max(0, Math.floor(estimatedTokensRaw))
         : undefined;
+    const atoms = obj["atoms"] !== undefined ? parseAtoms(obj["atoms"], files, sourcePath) : undefined;
     return {
         name,
         version,
         ...(purpose !== undefined ? { purpose } : {}),
         files,
         ...(estimatedTokens !== undefined ? { estimatedTokens } : {}),
+        ...(atoms !== undefined ? { atoms } : {}),
     };
 }
+// ---------------------------------------------------------------------------
+// OPR.0.5.3.5 mini-req 1 — install atoms. An atom is an ADDRESS plus
+// composition metadata, never a new file: fresh/handover/post-compaction all
+// compose addresses into the same bytes (mini-req 5 by construction). Every
+// rule here fails LOUD with the atom's index and id — a malformed atom must
+// stop ingest, never thin a later compose.
+const MARKDOWN_SUFFIXES = [".md", ".markdown"];
+const ATOM_ID = /^[a-z0-9][a-z0-9-]{0,63}$/;
+const ALLOWED_ATOM_KEYS = new Set([
+    "id", "address", "taxonomy", "regions", "situations", "purpose", "runtime", "order", "requires", "priority", "probe",
+]);
+// The typos worth a kindness (r1 F2): singular/plural slips on the fields whose
+// silent loss is sharpest.
+const ALLOWED_PROBE_KEYS = new Set(["prompt", "expect", "expectedPatterns", "rubric"]);
+const NEAR_MISS_ATOM_KEYS = {
+    require: "requires", region: "regions", situation: "situations", probes: "probe",
+};
+function atomError(sourcePath, index, detail) {
+    return new ContextPackError("manifest_invalid", `manifest at ${sourcePath} atoms[${index}]: ${detail}`, { sourcePath, index });
+}
+function enumField(value, allowed, field, sourcePath, index) {
+    if (typeof value !== "string" || !allowed.includes(value)) {
+        throw atomError(sourcePath, index, `'${field}' must be one of ${allowed.join(" | ")} (got: ${JSON.stringify(value)})`);
+    }
+    return value;
+}
+function parseAtoms(raw, files, sourcePath) {
+    if (!Array.isArray(raw)) {
+        throw new ContextPackError("manifest_invalid", `manifest at ${sourcePath} 'atoms' must be an array`, { sourcePath });
+    }
+    const declaredFiles = new Set(files.map((f) => f.path));
+    const atoms = [];
+    const seenIds = new Set();
+    for (let i = 0; i < raw.length; i++) {
+        const entry = raw[i];
+        if (!entry || typeof entry !== "object" || Array.isArray(entry)) {
+            throw atomError(sourcePath, i, "must be an object");
+        }
+        const a = entry;
+        // r1 F2: ingest knows the complete legal key set — an unknown key rejects
+        // LOUD. A `require:` typo silently dropping a dependency edge is the exact
+        // failure the field exists to prevent; every REQUIRED field failing loud
+        // while a typo'd OPTIONAL one fails silent would break the module contract.
+        for (const key of Object.keys(a)) {
+            if (!ALLOWED_ATOM_KEYS.has(key)) {
+                const hint = NEAR_MISS_ATOM_KEYS[key];
+                throw atomError(sourcePath, i, `unknown field '${key}'${hint ? ` — did you mean '${hint}'?` : ""} (allowed: ${[...ALLOWED_ATOM_KEYS].join(", ")})`);
+            }
+        }
+        const id = a["id"];
+        if (typeof id !== "string" || !ATOM_ID.test(id)) {
+            throw atomError(sourcePath, i, `'id' must be a stable slug matching [a-z0-9][a-z0-9-]{0,63} (got: ${JSON.stringify(id)})`);
+        }
+        if (seenIds.has(id))
+            throw atomError(sourcePath, i, `duplicate atom id '${id}' — ids are the join key for order/requires/probes`);
+        seenIds.add(id);
+        const addressRaw = a["address"];
+        if (typeof addressRaw !== "string" || addressRaw.length === 0) {
+            throw atomError(sourcePath, i, "'address' is required: file or file#H2-slug/H3-slug");
+        }
+        let parsedAddr;
+        try {
+            parsedAddr = parseAddress(addressRaw);
+        }
+        catch (err) {
+            if (err instanceof AddressResolutionError)
+                throw atomError(sourcePath, i, `'address' is malformed — ${err.message}`);
+            throw err;
+        }
+        // Atom 4a — the pre-'#' ref carries its resolver kind (Q2-Amendment 1's
+        // one-grammar-two-resolvers ruling): a bare LIBRARY ref must be a declared
+        // pack file; a seat:/mission: TREE ref lives outside the pack by design
+        // (nothing must be library-homed to be composable), so it validates
+        // structurally here (unknown prefix / traversal reject loud) and resolves
+        // from configured roots at compose.
+        let sourceRef;
+        try {
+            sourceRef = parseSourceRef(parsedAddr.ref);
+        }
+        catch (err) {
+            if (err instanceof SourceResolutionError)
+                throw atomError(sourcePath, i, `'address' — ${err.message}`);
+            throw err;
+        }
+        if (sourceRef.kind === "library" && !declaredFiles.has(parsedAddr.ref)) {
+            throw atomError(sourcePath, i, `'address' references '${parsedAddr.ref}', which is not a declared pack file — a library atom addresses INTO the pack's own files (tree sources use the seat:/mission: prefix)`);
+        }
+        if (parsedAddr.headerPath.length > 0 && !MARKDOWN_SUFFIXES.some((s) => sourceRef.rel.endsWith(s))) {
+            throw atomError(sourcePath, i, `'address' uses a header path on '${parsedAddr.ref}' — header addressing only applies to markdown files (${MARKDOWN_SUFFIXES.join(", ")})`);
+        }
+        const taxonomy = enumField(a["taxonomy"], ATOM_TAXONOMIES, "taxonomy", sourcePath, i);
+        const purpose = enumField(a["purpose"], ATOM_PURPOSES, "purpose", sourcePath, i);
+        const priority = enumField(a["priority"], ATOM_PRIORITIES, "priority", sourcePath, i);
+        const runtime = a["runtime"] === undefined ? "any" : enumField(a["runtime"], ATOM_RUNTIMES, "runtime", sourcePath, i);
+        const situationsRaw = a["situations"];
+        if (!Array.isArray(situationsRaw) || situationsRaw.length === 0) {
+            throw atomError(sourcePath, i, `'situations' must be a non-empty array of ${ATOM_SITUATIONS.join(" | ")} — it is the composition algebra's selector`);
+        }
+        const situations = situationsRaw.map((s) => enumField(s, ATOM_SITUATIONS, "situations", sourcePath, i));
+        let regions;
+        if (a["regions"] !== undefined) {
+            const regionsRaw = a["regions"];
+            if (!Array.isArray(regionsRaw))
+                throw atomError(sourcePath, i, "'regions' must be an array when present");
+            regions = regionsRaw.map((r) => enumField(r, ATOM_REGIONS, "regions", sourcePath, i));
+        }
+        const order = a["order"];
+        if (typeof order !== "number" || !Number.isInteger(order)) {
+            throw atomError(sourcePath, i, `'order' must be an integer — walks are ordered and absorption depends on sequence (got: ${JSON.stringify(order)})`);
+        }
+        let requires;
+        if (a["requires"] !== undefined) {
+            const requiresRaw = a["requires"];
+            if (!Array.isArray(requiresRaw) || requiresRaw.some((r) => typeof r !== "string")) {
+                throw atomError(sourcePath, i, "'requires' must be an array of atom ids when present");
+            }
+            requires = requiresRaw;
+            if (requires.includes(id))
+                throw atomError(sourcePath, i, `atom '${id}' requires itself`);
+        }
+        let probe;
+        if (a["probe"] !== undefined) {
+            const p = a["probe"];
+            if (!p || typeof p !== "object" || Array.isArray(p))
+                throw atomError(sourcePath, i, "'probe' must be an object { prompt, expect, expectedPatterns?, rubric? }");
+            const pr = p;
+            // Q3 bridge: the key gate extends INSIDE probe (the dispositioned Atom-2
+            // note landing at its recorded spot), and the shape reconciles with the
+            // harness's EvalCase — expectedPatterns/rubric are LEGAL here, so the
+            // natural mistake r1 predicted becomes the schema instead of silent loss.
+            for (const key of Object.keys(pr)) {
+                if (!ALLOWED_PROBE_KEYS.has(key)) {
+                    throw atomError(sourcePath, i, `'probe' has unknown field '${key}'${key === "rubrics" ? " — did you mean 'rubric'?" : ""} (allowed: ${[...ALLOWED_PROBE_KEYS].join(", ")})`);
+                }
+            }
+            if (typeof pr["prompt"] !== "string" || pr["prompt"].length === 0 || typeof pr["expect"] !== "string" || pr["expect"].length === 0) {
+                throw atomError(sourcePath, i, "'probe' needs BOTH a natural 'prompt' and the 'expect'ed observable behavior — acceptance is changed behavior, never files delivered");
+            }
+            let expectedPatterns;
+            if (pr["expectedPatterns"] !== undefined) {
+                const eps = pr["expectedPatterns"];
+                if (!Array.isArray(eps) || eps.some((e) => typeof e !== "string")) {
+                    throw atomError(sourcePath, i, "'probe.expectedPatterns' must be an array of regex source strings when present");
+                }
+                for (const src of eps) {
+                    try {
+                        new RegExp(src);
+                    }
+                    catch {
+                        throw atomError(sourcePath, i, `'probe.expectedPatterns' entry '${src}' is not a compilable regex source`);
+                    }
+                }
+                expectedPatterns = eps;
+            }
+            if (pr["rubric"] !== undefined && typeof pr["rubric"] !== "string") {
+                throw atomError(sourcePath, i, "'probe.rubric' must be a string when present");
+            }
+            probe = {
+                prompt: pr["prompt"],
+                expect: pr["expect"],
+                ...(expectedPatterns !== undefined ? { expectedPatterns } : {}),
+                ...(pr["rubric"] !== undefined ? { rubric: pr["rubric"] } : {}),
+            };
+        }
+        atoms.push({
+            id,
+            address: addressRaw,
+            taxonomy,
+            ...(regions !== undefined ? { regions } : {}),
+            situations,
+            purpose,
+            runtime,
+            order,
+            ...(requires !== undefined ? { requires } : {}),
+            priority,
+            ...(probe !== undefined ? { probe } : {}),
+        });
+    }
+    // Cross-atom edges, after all ids are known.
+    for (let i = 0; i < atoms.length; i++) {
+        for (const req of atoms[i].requires ?? []) {
+            if (!seenIds.has(req)) {
+                throw atomError(sourcePath, i, `atom '${atoms[i].id}' requires '${req}', which no atom declares`);
+            }
+        }
+    }
+    // A requires CYCLE can never be closed over by any subset profile — reject at
+    // ingest with the cycle spelled out. The walk is ITERATIVE with an explicit
+    // stack (r1 F1): the recursive form threw a bare RangeError past ~5000 atoms —
+    // outside the ContextPackError channel this module promises — and depth is
+    // attacker-choosable (packs install from URLs, slice-07 R4); no recursion
+    // threshold is safe across Node versions/platforms, so there isn't one.
+    const state = new Map();
+    const byId = new Map(atoms.map((atom) => [atom.id, atom]));
+    for (const root of atoms) {
+        if (state.get(root.id) === "done")
+            continue;
+        // Each frame tracks how far through its requires list it has walked.
+        const stack = [{ id: root.id, next: 0 }];
+        state.set(root.id, "visiting");
+        while (stack.length > 0) {
+            const frame = stack[stack.length - 1];
+            const reqs = byId.get(frame.id).requires ?? [];
+            if (frame.next >= reqs.length) {
+                state.set(frame.id, "done");
+                stack.pop();
+                continue;
+            }
+            const req = reqs[frame.next++];
+            const s = state.get(req);
+            if (s === "done")
+                continue;
+            if (s === "visiting") {
+                const trail = stack.map((f) => f.id);
+                const cycle = [...trail.slice(trail.indexOf(req)), req].join(" -> ");
+                throw new ContextPackError("manifest_invalid", `manifest at ${sourcePath} atoms: requires cycle ${cycle} — no subset profile could ever close over it`, { sourcePath });
+            }
+            state.set(req, "visiting");
+            stack.push({ id: req, next: 0 });
+        }
+    }
+    return atoms;
+}
 //# sourceMappingURL=manifest-parser.js.map

package/node_modules/@openrig/daemon/dist/domain/context-packs/manifest-parser.js.map

@@ -1 +1 @@
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