@openneuro/server 5.0.0 → 5.1.0

package/src/graphql/schema.ts

@@ -1,1114 +1,29 @@
-import { schemaComposer } from "graphql-compose"
-import resolvers from "./resolvers"
-import {
-  advancedDatasetSearch,
-  datasetSearch,
-} from "./resolvers/dataset-search"
-
-export const typeDefs = `
-  scalar Date
-  scalar DateTime
-  scalar Time
-  scalar BigInt
-
-  enum CacheControlScope {
-    PUBLIC
-    PRIVATE
-  }
-
-  directive @cacheControl(
-    maxAge: Int
-    scope: CacheControlScope
-  ) on OBJECT | FIELD_DEFINITION
-
-  enum SortOrdering {
-    ascending
-    descending
-  }
-
-  # Sorting order for users
-  input UserSortInput {
-    field: String!
-    order: SortOrdering = ascending 
-  }
-
-  # Sorting order for datasets
-  input DatasetSort {
-    # Dataset created time
-    created: SortOrdering
-    # Alphanumeric sort of dataset name
-    name: SortOrdering
-    # Alphanumeric sort of uploader name
-    uploader: SortOrdering
-    # Order by star count
-    stars: SortOrdering
-    # Order by download count
-    downloads: SortOrdering
-    # Order by dataset views
-    views: SortOrdering
-    # Order by count of dataset followers
-    subscriptions: SortOrdering
-    # Order by publish date
-    publishDate: SortOrdering
-  }
-
-  # Dataset query filter flags
-  input DatasetFilter {
-    "Limit to datasets available publicly"
-    public: Boolean
-    "Return only datasets that are shared with the user"
-    shared: Boolean
-    "Return only datasets with an invalid Draft"
-    invalid: Boolean
-    "Return only datasets starred by the query user"
-    starred: Boolean
-    "Return all datasets, ignores any other constraints but not sorts"
-    all: Boolean
-  }
-
-  type Query {
-    # One dataset
-    dataset(id: ID!): Dataset
-    # Get all datasets
-    datasets(
-      "Limit results, default 25, max 100"
-      first: Int = 25
-      "Cursor key used to fetch later results"
-      after: String
-      "Cursor key used to fetch earlier results"
-      before: String
-      "Sorting fields"
-      orderBy: DatasetSort = { created: ascending }
-      "Filtering fields"
-      filterBy: DatasetFilter = {}
-      "Query user's datasets only - excludes public datasets from other filters"
-      myDatasets: Boolean
-      "Query datasets of a specific modality"
-      modality: String
-    ): DatasetConnection
-    # Get one user
-    user(id: ID!): User
-    # Get a list of users
-    users(
-      orderBy: [UserSortInput!]
-      isAdmin: Boolean
-      isBlocked: Boolean
-      search: String
-      limit: Int 
-      offset: Int 
-    ): UserList! 
-    # Get the total number of dataset participants
-    participantCount(modality: String): Int @cacheControl(maxAge: 3600, scope: PUBLIC)
-    # Request one snapshot
-    snapshot(datasetId: ID!, tag: String!): Snapshot
-    # Get annexed files that have been flagged or removed.
-    flaggedFiles(
-      "Get files that have been flagged, default true."
-      flagged: Boolean = true
-      "Get files that have already been deleted, default false."
-      deleted: Boolean = false
-    ): [FlaggedFile]
-    # All public dataset metadata
-    publicMetadata: [Metadata] @cacheControl(maxAge: 86400, scope: PUBLIC)
-    orcidConsent: Boolean
-  }
-
-  type Mutation {
-    # Create a new dataset container and repository
-    createDataset(affirmedDefaced: Boolean, affirmedConsent: Boolean): Dataset
-    # Deletes a dataset and all associated snapshots
-    deleteDataset(id: ID!, reason: String, redirect: String): Boolean
-    # Tag the current draft
-    createSnapshot(datasetId: ID!, tag: String!, changes: [String!]): Snapshot
-    # Remove a tag from the dataset
-    deleteSnapshot(datasetId: ID!, tag: String!): Boolean!
-    # removes the annex object of the given file
-    removeAnnexObject(datasetId: ID!, snapshot: String!, annexKey: String!, path: String, filename: String): Boolean
-    # flags the given file
-    flagAnnexObject(datasetId: ID!, snapshot: String!, filepath: String!, annexKey: String!): Boolean
-    # Delete files or directories in a draft
-    deleteFiles(datasetId: ID!, files: [DeleteFile]): Boolean
-    # Add or remove the public flag from a dataset
-    updatePublic(datasetId: ID!, publicFlag: Boolean!): Boolean!
-    # Update a draft summary
-    updateSummary(summary: SummaryInput!): Summary
-    # Update a draft with validation results
-    updateValidation(validation: ValidatorInput!): Boolean
-    # Update a users's permissions on a dataset
-    updatePermissions(datasetId: ID!, userEmail: String!, level: String!): DatasetPermissions
-    # Update a users's permissions for a given ORCID
-    updateOrcidPermissions(datasetId: ID!, userOrcid: String!, level: String!): DatasetPermissions
-    # Remove a users's permissions on a dataset
-    removePermissions(datasetId: ID!, userId: String!): Boolean
-    # Remove a user
-    removeUser(id: ID!): Boolean
-    # Sets a users admin status
-    setAdmin(id: ID!, admin: Boolean!): User
-    # Sets a users admin status
-    setBlocked(id: ID!, blocked: Boolean!): User
-    # Mutation for updating user data
-    updateUser(id: ID!, location: String, institution: String, links: [String], orcidConsent: Boolean): User
-    # Tracks a view or download for a dataset
-    trackAnalytics(datasetId: ID!, tag: String, type: AnalyticTypes): Boolean
-    # Follow dataset
-    followDataset(datasetId: ID!): FollowDatasetResponse
-    # Star dataset
-    starDataset(datasetId: ID!): StarDatasetResponse
-    # Make a dataset public
-    publishDataset(datasetId: ID!): Boolean
-    # Update dataset_description.json scalar fields
-    updateDescription(datasetId: ID!, field: String!, value: String!): Description
-    # Update dataset_description.json list fields
-    updateDescriptionList(datasetId: ID!, field: String!, value: [String!]): Description
-    # Update dataset README file
-    updateReadme(datasetId: ID!, value: String!): Boolean
-    # Submits a new comment and returns the comment ID for replies
-    addComment(datasetId: ID!, parentId: ID, comment: String!): ID
-    # Edits an existing comment
-    editComment(commentId: ID!, comment: String!): Boolean
-    # Deletes an existing comment (deleteChildren defaults to false). Returns the ids of all deleted comments.
-    deleteComment(commentId: ID!, deleteChildren: Boolean): [String]
-    # Subscribes user to newsletter
-    subscribeToNewsletter(email: String!): Boolean
-    # Upserts dataset metadata
-    addMetadata(datasetId: ID!, metadata: MetadataInput!): Metadata
-    # Start an upload
-    prepareUpload(datasetId: ID!, uploadId: ID!): UploadMetadata
-    # Add files from a completed upload to the dataset draft
-    finishUpload(uploadId: ID!): Boolean
-    # Drop cached data for a dataset - requires site admin access
-    cacheClear(datasetId: ID!): Boolean
-    # Rerun fsck on a dataset if 30 minutes have passed since last request
-    fsckDataset(datasetId: ID!): Boolean
-    # Rerun the latest validator on a given commit
-    revalidate(datasetId: ID!, ref: String!): Boolean
-    # Request a temporary token for git access
-    prepareRepoAccess(datasetId: ID!): RepoMetadata
-    # Rerun remote exports
-    reexportRemotes(datasetId: ID!): Boolean
-    # Reset draft commit
-    resetDraft(datasetId: ID!, ref: String!): Boolean
-    # Flag snapshot as deprecated
-    deprecateSnapshot(datasetId: ID!, tag: String!, reason: String!): Snapshot
-    # Unflag snapshot as deprecated
-    undoDeprecateSnapshot(datasetId: ID!, tag: String!): Snapshot
-    # Create anonymous read only reviewer
-    createReviewer(datasetId: ID!): DatasetReviewer
-    # Remove reviewer
-    deleteReviewer(datasetId: ID!, id: ID!): DatasetReviewer
-    # Add a relationship to an external DOI
-    createRelation(datasetId: ID!, doi: String!, relation: RelatedObjectRelation!, kind: RelatedObjectKind!, description: String): Dataset
-    # Remove a relationship to an external DOI
-    deleteRelation(datasetId: ID!, doi: String!): Dataset
-    # Submit an import for a remote dataset, returns id if the URL is accepted for import
-    importRemoteDataset(datasetId: ID!, url: String!): ID
-    # Finish and notify import is done, returns true if successful
-    finishImportRemoteDataset(id: ID!, success: Boolean!, message: String): Boolean
-    # Create or update an admin note on a dataset
-    saveAdminNote(id: ID, datasetId: ID!, note: String!): DatasetEvent
-    # Create a git event log for dataset changes
-    createGitEvent(datasetId: ID!, commit: String!, reference: String!): DatasetEvent
-    # Request contributor status for a dataset
-    createContributorRequestEvent(datasetId: ID!): DatasetEvent
-    # Save contributor request response data
-    processContributorRequest(
-      datasetId: ID!
-      targetUserId: ID!
-      requestId: ID!
-      resolutionStatus: ResponseStatusType!
-      reason: String
-    ): DatasetEvent
-    # Create or update a fileCheck document
-    updateFileCheck(
-      datasetId: ID!
-      hexsha: String!
-      refs: [String!]!
-      annexFsck: [AnnexFsckInput!]!
-      remote: String
-    ): FileCheck
-    # Profile Event Status updates
-    updateEventStatus(eventId: ID!, status: NotificationStatusType!): UserNotificationStatus
-    updateContributors(
-      datasetId: String!
-      newContributors: [ContributorInput!]!
-    ): UpdateContributorsPayload!
-    createContributorCitationEvent(
-      datasetId: ID!
-      targetUserId: ID!
-      contributorData: ContributorInput!
-    ): DatasetEvent
-    processContributorCitation(
-      eventId: ID!
-      status: ResponseStatusType!
-    ): DatasetEvent
-    # Hold or release automated deletion for a dataset
-    holdDeletion(datasetId: ID!, hold: Boolean!): Boolean
-    # Update worker task queue status
-    updateWorkerTask(
-      id: ID!,
-      args: JSON,
-      kwargs: JSON,
-      taskName: String,
-      worker: String,
-      queuedAt: DateTime,
-      startedAt: DateTime,
-      finishedAt: DateTime,
-      error: String,
-      executionTime: Int,
-    ): WorkerTask
-  }
-
-  # Anonymous dataset reviewer
-  type DatasetReviewer {
-    id: ID!
-    # Dataset accession number
-    datasetId: ID!
-    # Expiration time
-    expiration: DateTime
-    # Login URL generated (only returned on creation)
-    url: String!
-  }
-
-  # Sort options for advanced dataset search
-  enum SearchSortOption {
-    relevance
-    newest
-    oldest
-    activity
-    name_asc
-    name_desc
-    last_updated
-  }
-
-  # Search input for advanced dataset search
-  input DatasetSearchInput {
-    keywords: [String]
-    modality: String
-    ageRange: [Int]
-    subjectCountRange: [Int]
-    diagnosis: String
-    tasks: [String]
-    authors: [String]
-    sex: String
-    dateRange: String
-    species: String
-    studyStructure: String
-    studyDomains: [String]
-    bidsDatasetType: String
-    brainInitiative: Boolean
-    bodyParts: [String]
-    scannerManufacturers: [String]
-    scannerManufacturersModelNames: [String]
-    tracerNames: [String]
-    tracerRadionuclides: [String]
-    sortBy: SearchSortOption
-    "Filter datasets by a specific user's permissions"
-    userId: String
-    "Filter to only public datasets"
-    publicOnly: Boolean
-  }
-
-  input DeleteFile {
-    path: String!
-    filename: String
-  }
-
-  input UploadFile {
-    filename: String!
-    size: BigInt!
-  }
-
-  input SummaryPetInput {
-    BodyPart: [String]
-    ScannerManufacturer: [String]
-    ScannerManufacturersModelName: [String]
-    TracerName: [String]
-    TracerRadionuclide: [String]
-  }
-
-  # BIDS Validator metadata
-  type ValidatorMetadata {
-    # Unique string identifying the type of BIDS validator software
-    validator: String
-    # Semantic versioning string for the version of the validation software
-    version: String
-  }
-
-  # BIDS Validator metadata
-  input ValidatorMetadataInput {
-    # Unique string identifying the type of BIDS validator software
-    validator: String
-    # Semantic versioning string for the version of the validation software
-    version: String
-  }
-
-  input SummaryInput {
-    id: ID! # Git reference for this summary
-    datasetId: ID!
-    modalities: [String]
-    secondaryModalities: [String]
-    dataTypes: [String]
-    sessions: [String]
-    subjects: [String]
-    subjectMetadata: [SubjectMetadataInput]
-    tasks: [String]
-    size: BigInt!
-    totalFiles: Int!
-    dataProcessed: Boolean
-    pet: SummaryPetInput
-    # Metadata for validation software used
-    validatorMetadata: ValidatorMetadataInput
-    # BIDS Specification schema version
-    schemaVersion: String
-  }
-
-  input SubjectMetadataInput {
-    participantId: String!
-    age: Float
-    sex: String
-    group: String
-  }
-
-  input ValidatorInput {
-    id: ID! # Git reference for this validation
-    datasetId: ID!
-    issues: [ValidatorIssueInput]!
-    codeMessages: [ValidatorCodeMessageInput]!
-    validatorMetadata: ValidatorMetadataInput!
-  }
-
-  # Dataset Metadata
-  input MetadataInput {
-    datasetId: ID!
-    datasetUrl: String
-    datasetName: String
-    firstSnapshotCreatedAt: DateTime
-    latestSnapshotCreatedAt: DateTime
-    dxStatus: String
-    tasksCompleted: [String]
-    trialCount: Int
-    studyDesign: String
-    studyDomain: String
-    studyLongitudinal: String
-    dataProcessed: Boolean
-    species: String
-    associatedPaperDOI: String
-    openneuroPaperDOI: String
-    seniorAuthor: String
-    adminUsers: [String]
-    ages: [Float]
-    modalities: [String]
-    grantFunderName: String
-    grantIdentifier: String
-    affirmedDefaced: Boolean
-    affirmedConsent: Boolean
-  }
-
-  # Information for pagination in a connection.
-  type PageInfo {
-    # When paginating forwards, are there more items?
-    hasNextPage: Boolean!
-    # When paginating backwards, are there more items?
-    hasPreviousPage: Boolean!
-    # When paginating backwards, the cursor to continue.
-    startCursor: String
-    # When paginating forwards, the cursor to continue.
-    endCursor: String
-    # Total results
-    count: Int
-  }
-
-  # OpenNeuro user records from all providers
-  type User {
-    id: ID
-    provider: UserProvider
-    avatar: String
-    orcid: String
-    created: DateTime!
-    modified: DateTime
-    lastSeen: DateTime
-    email: String
-    name: String
-    admin: Boolean
-    blocked: Boolean
-    location: String
-    institution: String
-    github: String
-    githubSynced: Date
-    links: [String]
-    notifications: [DatasetEvent!] 
-    orcidConsent: Boolean
-  }
-
-  type UserList {
-    users: [User!]!
-    totalCount: Int!
-  }
-
-  # Which provider a user login comes from
-  enum UserProvider {
-    google
-    orcid
-  }
-
-  # Connection for a list of datasets
-  type DatasetConnection {
-    # A list of dataset edges
-    edges: [DatasetEdge]
-    # Pagination metadata
-    pageInfo: PageInfo!
-  }
-
-  # One connected dataset
-  type DatasetEdge {
-    # Edge identifier
-    id: String!
-    # Connected dataset
-    node: Dataset!
-    # Pagination cursor
-    cursor: String!
-  }
-
-  type DatasetId {
-    datasetId: ID
-  }
-
-  # Client metadata needed to complete an upload
-  type UploadMetadata {
-    # Unique identifier for this upload
-    id: ID!
-    # Dataset associated with this upload
-    datasetId: ID!
-    # Is this a complete upload (do we allow a resume or not?)
-    complete: Boolean!
-    # Estimated size in bytes (this is just used for progress display and can be inaccurate)
-    estimatedSize: BigInt
-    # On the first request, this token is returned to allow uploads into this upload bucket
-    token: String
-    # An endpoint index used to identify the backend responsible for these files
-    endpoint: Int
-  }
-
-  # Top level dataset, one draft and many snapshots
-  type Dataset {
-    id: ID!
-    created: DateTime!
-    uploader: User
-    public: Boolean
-    draft: Draft
-    snapshots: [Snapshot]
-    # Newest snapshot
-    latestSnapshot: Snapshot!
-    permissions: DatasetPermissions
-    analytics: Analytic
-    stars: [Star]
-    followers: [Follower]
-    # Canonical name, latest snapshot or draft if no snapshot or default if neither
-    name: String
-    # User comments on this dataset
-    comments: [Comment]
-    # Am I following this dataset?
-    following: Boolean
-    # Have I starred this dataset?
-    starred: Boolean
-    # When was this dataset first made public?
-    publishDate: DateTime
-    # Is the dataset available for analysis on Brainlife?
-    onBrainlife: Boolean @cacheControl(maxAge: 10080, scope: PUBLIC)
-    # Available derivatives of this dataset
-    derivatives: [DatasetDerivatives] @cacheControl(maxAge: 3600, scope: PUBLIC)
-    # Dataset Metadata
-    metadata: Metadata
-    # Return the version history for a dataset (git log)
-    history: [DatasetCommit]
-    # Worker assignment
-    worker: String
-    # Anonymous reviewers for this dataset
-    reviewers: [DatasetReviewer]
-    # Dataset belongs to Brain Initiative
-    brainInitiative: Boolean
-    # Log of events associated with this dataset
-    events: [DatasetEvent]
-    # Hold automated deletion for this dataset
-    holdDeletion: Boolean
-  }
-
-  type DatasetDerivatives {
-    # Remote reference to display
-    name: String
-    # Is this an OpenNeuro derivative?
-    local: Boolean
-    # S3-like URL if available
-    s3Url: String
-    # DataLad GitHub URL if available
-    dataladUrl: String
-  }
-
-  type DatasetCommit {
-    # Git commit hash
-    id: ID!
-    # Commit time
-    date: DateTime
-    # Author string
-    authorName: String
-    # Author email
-    authorEmail: String
-    # Commit message
-    message: String
-    # Associated commit references (tags or branches)
-    references: String
-    # File changes in this commit
-    files: [DiffFiles]
-    # Files changed
-    filesChanged: Int
-    # Total number of insertions
-    insertions: Int
-    # Total number of deletions
-    deletions: Int
-  }
-
-  type DiffFiles {
-    # Status string (A = added, M = modified, D = deleted)
-    status: String
-    mode: Int
-    # Previous path
-    old: String
-    # New path
-    new: String
-    binary: Boolean
-  }
-
-  type ValidatorCodeMessage {
-    code: String!
-    message: String!
-  }
-
-  # BIDS Validator (schema) issues
-  type ValidatorIssue {
-    code: String!
-    subCode: String
-    location: String
-    severity: Severity
-    rule: String
-    issueMessage: String
-    affects: String
-    line: Int
-  }
-
-  type DatasetValidation {
-    # Hash of the data validated
-    id: String
-    datasetId: String
-    # Issue objects returned by BIDS validator
-    issues: [ValidatorIssue]
-    codeMessages: [ValidatorCodeMessage]
-    # Count of errors
-    errors: Int
-    # Count of warnings
-    warnings: Int
-  }
-
-  # Ephemeral draft or working tree for a dataset
-  type Draft {
-    id: ID
-    # Which dataset this draft is related to
-    dataset: Dataset
-    # Last edit timestamp
-    modified: DateTime
-    # Validator summary
-    summary: Summary
-    # Validator issues (legacy validator)
-    issues: [ValidationIssue]
-    # Validator issues status (legacy validator)
-    issuesStatus: ValidationIssueStatus
-    # Validator issues (schema validator)
-    validation: DatasetValidation
-    # Committed files in the working tree
-    files(tree: String, recursive: Boolean): [DatasetFile]
-    # dataset_description.json fields
-    description: Description
-    # Dataset README
-    readme: String
-    # Uploads in progress or recently completed
-    uploads: [UploadMetadata]
-    # Git commit hash
-    head: String
-    # Total size in bytes of this draft
-    size: BigInt
-    # File issues
-    fileCheck: FileCheck
-    # Contributors list from datacite.yml
-    contributors: [Contributor]
-  }
-
-  # Tagged snapshot of a draft
-  type Snapshot @cacheControl(maxAge: 3600, scope: PUBLIC) {
-    # Snapshot ids are dataset:tag values
-    id: ID!
-    # Git tag of this snapshot
-    tag: String!
-    # The parent dataset for this snapshot
-    dataset: Dataset!
-    created: DateTime
-    # bids-validator summary of this snapshot
-    summary: Summary
-    # Validator issues (legacy validator)
-    issues: [ValidationIssue]
-    # Validator issues status (legacy validator)
-    issuesStatus: ValidationIssueStatus
-    # Validator issues (schema validator)
-    validation: DatasetValidation
-    # Snapshot files
-    files(tree: String, recursive: Boolean): [DatasetFile]
-    # dataset_description.json fields
-    description: Description
-    # Snapshot usage and download statistics
-    analytics: Analytic
-    # Dataset README
-    readme: String @cacheControl(maxAge: 31536000, scope: PUBLIC)
-    # The git hash associated with this snapshot
-    hexsha: String
-    # Whether or not this snapshot has been deprecated (returns null if false)
-    deprecated: DeprecatedSnapshot
-    # Related DOI references
-    related: [RelatedObject]
-    # Is the snapshot available for analysis on Brainlife?
-    onBrainlife: Boolean @cacheControl(maxAge: 10080, scope: PUBLIC)
-    # Total size in bytes of this snapshot
-    size: BigInt
-    # Contributors list from datacite.yml
-    contributors: [Contributor]
-  }
-
-  # RelatedObject nature of relationship
-  enum RelatedObjectRelation {
-    sameAs
-    derivative
-    source
-  }
-
-  # RelatedObject kind of target object
-  enum RelatedObjectKind {
-    Dataset
-    Article
-  }
-
-  # DOI for an external object
-  type RelatedObject {
-    # DOI string in uri format
-    id: ID!
-    # The nature of the relationship
-    relation: RelatedObjectRelation!
-    # What kind of target object is it?
-    kind: RelatedObjectKind!
-    # Optional description
-    description: String
-  }
-
-  # Set on snapshots that have been deprecated
-  type DeprecatedSnapshot {
-    # hexsha of deprecated snapshots
-    id: ID!
-    # ID of user who flagged snapshot as deprecated
-    user: String
-    # Reason for deprecating snapshot
-    reason: String
-    # Timestamp of snapshot deprecation
-    timestamp: Date
-  }
-
-  # Contents of dataset_description.json
-  type Description @cacheControl(maxAge: 30, scope: PUBLIC) {
-    # Draft id for this description
-    id: ID!
-    # Name of the dataset
-    Name: String!
-    # The version of the BIDS standard that was used
-    BIDSVersion: String!
-    # License for distribution - see BIDS specification (https://bids.neuroimaging.io) appendix II for recommended values
-    License: String
-    # List of individuals who contributed to the creation/curation of the dataset
-    Authors: [String]
-    # PI or senior author of this dataset
-    SeniorAuthor: String
-    # Text acknowledging contributions of individuals or institutions beyond those listed in Authors or Funding.
-    Acknowledgements: String
-    # Instructions how researchers using this dataset should acknowledge the original authors. This field can also be used to define a publication that should be cited in publications that use the dataset.
-    HowToAcknowledge: String
-    # List of sources of funding (grant numbers)
-    Funding: [String]
-    # List of references to publication that contain information on the dataset, or links
-    ReferencesAndLinks: [String]
-    # The Document Object Identifier of the dataset (not the corresponding paper).
-    DatasetDOI: String
-    # The BIDS DatasetType field defined as "raw" or "derivative"
-    DatasetType: String
-    # List of ethics committee approvals of the research protocols and/or protocol identifiers.
-    EthicsApprovals: [String]
-  }
-
-
-  # Defines the Contributor type in contributors.ts
-  type Contributor {
-    name: String!
-    givenName: String
-    familyName: String
-    orcid: String
-    contributorType: String!
-    order: Int
-  }
-
-  # ContributorInput input type
-  input ContributorInput {
-    name: String
-    givenName: String
-    familyName: String
-    orcid: String
-    contributorType: String
-    order: Int
-  }
-
-  type UpdateContributorsPayload {
-    success: Boolean!
-    dataset: Dataset
-  }
-
-
-  # User permissions on a dataset
-  type Permission {
-    datasetId: ID!
-    userId: String!
-    level: String!
-    user: User
-  }
-
-  # Fundamentally an array of permissions tied to an id
-  #   for better cache control
-  type DatasetPermissions {
-    id: ID!
-    userPermissions: [Permission]
-  }
-
-  # Authors of a dataset
-  type Author {
-    ORCID: String
-    name: String
-  }
-
-  # Validator summary from bids-validator
-  type Summary {
-    id: ID!
-    modalities: [String]
-    primaryModality: String
-    secondaryModalities: [String]
-    sessions: [String]
-    subjects: [String]
-    subjectMetadata: [SubjectMetadata]
-    tasks: [String]
-    size: BigInt!
-    totalFiles: Int!
-    dataProcessed: Boolean
-    pet: SummaryPetFields
-    # BIDS Specification schema version
-    schemaVersion: String
-    # Validator metadata
-    validatorMetadata: ValidatorMetadata
-  }
-
-  type SummaryPetFields {
-    BodyPart: [String]
-    ScannerManufacturer: [String]
-    ScannerManufacturersModelName: [String]
-    TracerName: [String]
-    TracerRadionuclide: [String]
-  }
-
-  type SubjectMetadata {
-    participantId: String!
-    age: Float
-    sex: String
-    group: String
-  }
-
-  type FollowDatasetResponse {
-    following: Boolean
-    newFollower: Follower
-  }
-
-  # Dataset Followers
-  type Follower {
-    userId: String
-    datasetId: String
-  }
-
-  type StarDatasetResponse {
-    starred: Boolean
-    newStar: Star
-  }
-
-  # Dataset Stars
-  type Star @cacheControl(maxAge: 300, scope: PUBLIC) {
-    userId: String
-    datasetId: String
-  }
-
-  enum Severity {
-    error
-    warning
-  }
-
-  type ValidationIssue {
-    severity: Severity!
-    key: String!
-    code: Int
-    reason: String!
-    files: [ValidationIssueFile]
-    additionalFileCount: Int
-    helpUrl: String
-  }
-
-  # Legacy validator count of errors and warnings
-  type ValidationIssueStatus {
-    errors: Int
-    warnings: Int
-  }
-
-  input ValidatorIssueInput {
-    code: String!
-    subCode: String
-    location: String
-    severity: Severity
-    rule: String
-    issueMessage: String
-    affects: String
-    line: Int
-  }
-
-  input ValidatorCodeMessageInput {
-    code: String!
-    message: String!
-  }
-
-  type ValidationIssueFile {
-    name: String
-    path: String
-    key: String!
-    code: Int
-    file: ValidationIssueFileDetail
-    evidence: String
-    line: Int
-    character: Int
-    severity: Severity!
-    reason: String
-    helpUrl: String
-  }
-
-  type ValidationIssueFileDetail {
-    name: String
-    path: String
-    relativePath: String
-  }
-
-  # File metadata and link to contents
-  type DatasetFile {
-    id: ID!
-    filename: String!
-    size: BigInt
-    annexed: Boolean
-    urls: [String]
-    # Return a flag if this is a directory which contains more files
-    directory: Boolean
-  }
-
-  # Update to files
-  type FilesUpdate {
-    datasetId: String
-    action: String
-    payload: [DatasetFile]
-  }
-
-  # Analytics for a dataset
-  type Analytic @cacheControl(maxAge: 300, scope: PUBLIC) {
-    datasetId: ID!
-    tag: String
-    views: Int
-    downloads: Int
-  }
-
-  type Comment {
-    id: ID!
-    # Comment draft.js body
-    text: String!
-    # User posting the comment
-    user: User
-    # Comment creation time
-    createDate: DateTime!
-    # Any comment this is a reply to
-    parent: Comment
-    # Any replies to this comment
-    replies: [Comment]
-  }
-
-  # Types of analytics
-  enum AnalyticTypes {
-    downloads
-    views
-  }
-
-  # Dataset Metadata
-  type Metadata {
-    datasetId: ID!
-    datasetUrl: String
-    datasetName: String
-    firstSnapshotCreatedAt: DateTime
-    latestSnapshotCreatedAt: DateTime
-    dxStatus: String
-    tasksCompleted: [String]
-    trialCount: Int
-    studyDesign: String
-    studyDomain: String
-    studyLongitudinal: String
-    dataProcessed: Boolean
-    species: String
-    associatedPaperDOI: String
-    openneuroPaperDOI: String
-    seniorAuthor: String
-    adminUsers: [String]
-    ages: [Float]
-    modalities: [String]
-    grantFunderName: String
-    grantIdentifier: String
-    affirmedDefaced: Boolean
-    affirmedConsent: Boolean
-  }
-
-  # Info needed to access git repositories directly
-  type RepoMetadata {
-    # Temporary token used for HTTPS authentication via git
-    token: String
-    # An endpoint index used to identify the backend responsible for these files
-    endpoint: Int
-  }
-
-  # An annexed file that has been flagged for removal.
-  type FlaggedFile {
-    datasetId: String
-    snapshot: String
-    filepath: String
-    annexKey: String
-    removed: Boolean
-    remover: User
-    flagged: Boolean
-    flagger: User
-    createdAt: DateTime
-  }
-
-  type DatasetEventDescription {
-    type: String
-    version: String
-    public: Boolean
-    target: User
-    targetUserId: ID
-    level: String
-    ref: String
-    message: String
-    requestId: ID
-    reason: String
-    datasetId: ID
-    resolutionStatus: ResponseStatusType
-    contributorData: Contributor
-  }
-
-    # Dataset events
-  type DatasetEvent {
-    # Unique identifier for the event
-    id: ID
-    # Timestamp of the event
-    timestamp: DateTime
-    # User associated with the event
-    user: User
-    # Event description object
-    event: DatasetEventDescription
-    # True if the event succeeded
-    success: Boolean
-    # Notes associated with the event
-    note: String
-    # top-level datasetId field
-    datasetId: ID
-    # User's notification status event
-    notificationStatus: UserNotificationStatus
-    responseStatus: ResponseStatusType
-    hasBeenRespondedTo: Boolean
-  }
-
-
- # Possible statuses for user notification/events
-  enum NotificationStatusType {
-    UNREAD
-    SAVED
-    ARCHIVED
-  }
-
-  # Define the enum for responseStatus
-  enum ResponseStatusType {
-    PENDING
-    ACCEPTED
-    DENIED
-  }
-
-  # User's notification status
-  type UserNotificationStatus {
-    status: NotificationStatusType!
-  }
-
-
-
-  type FileCheck {
-    datasetId: String!
-    hexsha: String!
-    refs: [String!]!
-    annexFsck: [AnnexFsck!]
-    remote: String
-  }
-
-  type AnnexFsck {
-    command: String
-    errorMessages: [String]
-    file: String
-    key: String
-    note: String
-    success: Boolean
-  }
-
-  input AnnexFsckInput {
-    command: String
-    errorMessages: [String]
-    file: String
-    key: String
-    note: String
-    success: Boolean
-    dead: [String]
-    missing: [String]
-    untrusted: [String]
-    input: [String]
-  }
-
-  type WorkerTask {
-    id: ID!
-    args: JSON
-    kwargs: JSON
-    taskName: String
-    worker: String
-    queuedAt: DateTime
-    startedAt: DateTime
-    finishedAt: DateTime
-    error: String
-    executionTime: Int
-  }
-`
-
-schemaComposer.addTypeDefs(typeDefs)
-schemaComposer.addResolveMethods(resolvers)
-schemaComposer.Query.addFields(datasetSearch)
-schemaComposer.Query.addFields(advancedDatasetSearch)
-export default schemaComposer.buildSchema()
+import { builder } from "./builder"
+
+// Side-effect imports register types with the builder
+import "./schema/scalars"
+import "./schema/enums"
+import "./schema/inputs"
+import "./schema/refs"
+import "./schema/pagination"
+import "./schema/analytics"
+import "./schema/description"
+import "./schema/files"
+import "./schema/validation"
+import "./schema/metadata"
+import "./schema/reviewer"
+import "./schema/upload"
+import "./schema/worker"
+import "./schema/misc"
+import "./schema/permissions"
+import "./schema/user"
+import "./schema/comment"
+import "./schema/dataset-events"
+import "./schema/draft"
+import "./schema/snapshot"
+import "./schema/dataset"
+import "./schema/dataset-search"
+import "./schema/query"
+import "./schema/mutation"
+
+export default builder.toSchema()