@openneuro/app 4.8.0 → 4.9.0-alpha.0

package/src/scripts/fixtures/dataset-query.ts

@@ -0,0 +1,300 @@
+// Example queries responses for use in tests
+export const dataset = {
+  id: 'ds001032',
+  created: '2021-12-17T22:24:05.500Z',
+  public: true,
+  following: true,
+  followers: [
+    {
+      userId: '18492691-707f-4161-bc73-6ed22ce40138',
+      __typename: 'Follower',
+    },
+  ],
+  starred: false,
+  stars: [],
+  worker: 'datalad-0',
+  draft: {
+    id: 'ds001032',
+    modified: '2021-12-17T22:32:35.282Z',
+    readme:
+      'This dataset was obtained from the OpenfMRI project (http://www.openfmri.org).\nAccession #: ds003\nDescription: Rhyme judgment\n\nRelease history:\n10/06/2011: initial release\n3/21/2013: Updated release with QA information\n\nThis dataset is made available under the Public Domain Dedication and License \nv1.0, whose full text can be found at \nhttp://www.opendatacommons.org/licenses/pddl/1.0/. \nWe hope that all users will follow the ODC Attribution/Share-Alike \nCommunity Norms (http://www.opendatacommons.org/norms/odc-by-sa/); \nin particular, while not legally required, we hope that all users \nof the data will acknowledge the OpenfMRI project and NSF Grant \nOCI-1131441 (R. Poldrack, PI) in any publications.\n',
+    head: 'd62fdc42e2a568a6f89e33d68d3ef343ff883e02',
+    size: 623389,
+    description: {
+      Name: 'DS003-downsampled (only T1)',
+      Authors: ['J. Doe', 'J. Doe', 'J. Doe'],
+      DatasetDOI: null,
+      License: 'CC0',
+      Acknowledgements: null,
+      HowToAcknowledge: null,
+      Funding: null,
+      ReferencesAndLinks: null,
+      EthicsApprovals: null,
+      __typename: 'Description',
+    },
+    summary: {
+      modalities: ['MRI'],
+      secondaryModalities: ['MRI_Structural'],
+      sessions: [],
+      subjects: ['01', '02'],
+      subjectMetadata: [
+        {
+          participantId: '01',
+          age: 25,
+          sex: 'M',
+          group: null,
+          __typename: 'SubjectMetadata',
+        },
+      ],
+      tasks: [],
+      size: 623389,
+      totalFiles: 7,
+      dataProcessed: false,
+      pet: null,
+      __typename: 'Summary',
+    },
+    __typename: 'Draft',
+    issues: [
+      {
+        severity: 'warning',
+        code: 82,
+        reason:
+          'Tabular file contains custom columns not described in a data dictionary',
+        files: [
+          {
+            evidence:
+              'Columns: sex, age not defined, please define in: /participants.json',
+            line: null,
+            character: null,
+            reason:
+              'Tabular file contains custom columns not described in a data dictionary',
+            file: {
+              name: 'participants.tsv',
+              path: '/datalad/ds001032/participants.tsv',
+              relativePath: '/participants.tsv',
+              __typename: 'ValidationIssueFileDetail',
+            },
+            __typename: 'ValidationIssueFile',
+          },
+        ],
+        additionalFileCount: 0,
+        __typename: 'ValidationIssue',
+      },
+    ],
+  },
+  __typename: 'Dataset',
+  permissions: {
+    id: 'ds001032',
+    userPermissions: [
+      {
+        user: {
+          id: '18492691-707f-4161-bc73-6ed22ce40138',
+          email: 'test@example.com',
+          __typename: 'User',
+        },
+        level: 'admin',
+        __typename: 'Permission',
+      },
+    ],
+    __typename: 'DatasetPermissions',
+  },
+  snapshots: [
+    {
+      id: 'ds001032:1.0.0',
+      tag: '1.0.0',
+      created: '2021-12-17T22:22:49.000Z',
+      hexsha: 'e4daf5567b86426b13e2d319859164e410975056',
+      __typename: 'Snapshot',
+    },
+    {
+      id: 'ds001032:2.0.0',
+      tag: '2.0.0',
+      created: '2021-12-17T22:32:08.000Z',
+      hexsha: 'd62fdc42e2a568a6f89e33d68d3ef343ff883e02',
+      __typename: 'Snapshot',
+    },
+  ],
+  metadata: {
+    datasetId: 'ds001032',
+    datasetUrl: null,
+    datasetName: null,
+    firstSnapshotCreatedAt: null,
+    latestSnapshotCreatedAt: null,
+    dxStatus: '',
+    tasksCompleted: [],
+    trialCount: null,
+    grantFunderName: '',
+    grantIdentifier: '',
+    studyDesign: '',
+    studyDomain: '',
+    studyLongitudinal: '',
+    dataProcessed: null,
+    species: '',
+    associatedPaperDOI: '',
+    openneuroPaperDOI: '',
+    seniorAuthor: null,
+    adminUsers: [],
+    ages: [],
+    modalities: [],
+    affirmedDefaced: true,
+    affirmedConsent: false,
+    __typename: 'Metadata',
+  },
+  comments: [],
+  uploader: {
+    id: '18492691-707f-4161-bc73-6ed22ce40138',
+    name: 'Test User',
+    email: 'test@example.com',
+    __typename: 'User',
+  },
+  analytics: {
+    downloads: 0,
+    views: 23,
+    __typename: 'Analytic',
+  },
+  derivatives: [],
+  onBrainlife: false,
+}
+
+export const snapshot = {
+  id: 'ds001032:1.0.0',
+  tag: '1.0.0',
+  created: '2021-12-17T22:32:08.000Z',
+  readme:
+    'This dataset was obtained from the OpenfMRI project (http://www.openfmri.org).\nAccession #: ds003\nDescription: Rhyme judgment\n\nRelease history:\n10/06/2011: initial release\n3/21/2013: Updated release with QA information\n\nThis dataset is made available under the Public Domain Dedication and License \nv1.0, whose full text can be found at \nhttp://www.opendatacommons.org/licenses/pddl/1.0/. \nWe hope that all users will follow the ODC Attribution/Share-Alike \nCommunity Norms (http://www.opendatacommons.org/norms/odc-by-sa/); \nin particular, while not legally required, we hope that all users \nof the data will acknowledge the OpenfMRI project and NSF Grant \nOCI-1131441 (R. Poldrack, PI) in any publications.\n',
+  size: 623389,
+  deprecated: null,
+  description: {
+    Name: 'DS003-downsampled (only T1)',
+    Authors: ['J. Doe', 'J. Doe', 'J. Doe'],
+    DatasetDOI: null,
+    License: 'CC0',
+    Acknowledgements: null,
+    HowToAcknowledge: null,
+    Funding: null,
+    ReferencesAndLinks: null,
+    EthicsApprovals: null,
+    __typename: 'Description',
+  },
+  files: [
+    {
+      id: '7dcbfd4d8ef17174c6eb2cc023f7950c682563a5',
+      key: '4feabfe8803db741e9a0c5ad00bc3ada109558e3',
+      filename: 'CHANGES',
+      size: 52,
+      directory: null,
+      annexed: false,
+      __typename: 'DatasetFile',
+    },
+    {
+      id: '63888a199a5ce37377b1cd708cda59577dad218f',
+      key: 'fa84e5f958ec72d42b3e196e592f6db9f7104b19',
+      filename: 'README',
+      size: 709,
+      directory: null,
+      annexed: false,
+      __typename: 'DatasetFile',
+    },
+    {
+      id: '0a2a5d8d72a31f03608db59c4cfd650aba77c363',
+      key: 'b08aa0ec5b5e716479824859524a22140fb2af82',
+      filename: 'T1w.json',
+      size: 196,
+      directory: null,
+      annexed: false,
+      __typename: 'DatasetFile',
+    },
+    {
+      id: 'a2922b427c5c997e77ce058e0ce57ffd17123a7f',
+      key: '0b1856b91c11f67098ce60114417a62dd55730a5',
+      filename: 'dataset_description.json',
+      size: 172,
+      directory: null,
+      annexed: false,
+      __typename: 'DatasetFile',
+    },
+    {
+      id: 'f682a32c9538082fa6c8ad11e9a536dc07d1d0cf',
+      key: '37ecbdc7ab8ffaf2cddecc338092f6679089287d',
+      filename: 'participants.tsv',
+      size: 36,
+      directory: null,
+      annexed: false,
+      __typename: 'DatasetFile',
+    },
+    {
+      id: 'directory:sub-01',
+      key: null,
+      filename: 'sub-01',
+      size: 1,
+      directory: true,
+      annexed: null,
+      __typename: 'DatasetFile',
+    },
+    {
+      id: 'directory:sub-02',
+      key: null,
+      filename: 'sub-02',
+      size: 1,
+      directory: true,
+      annexed: null,
+      __typename: 'DatasetFile',
+    },
+  ],
+  summary: {
+    modalities: ['MRI'],
+    secondaryModalities: ['MRI_Structural'],
+    sessions: [],
+    subjects: ['01', '02'],
+    subjectMetadata: [
+      {
+        participantId: '01',
+        age: 25,
+        sex: 'M',
+        group: null,
+        __typename: 'SubjectMetadata',
+      },
+    ],
+    tasks: [],
+    size: 623389,
+    totalFiles: 7,
+    dataProcessed: false,
+    pet: null,
+    __typename: 'Summary',
+  },
+  analytics: {
+    downloads: 0,
+    views: 24,
+    __typename: 'Analytic',
+  },
+  issues: [
+    {
+      severity: 'warning',
+      code: 82,
+      reason:
+        'Tabular file contains custom columns not described in a data dictionary',
+      files: [
+        {
+          evidence:
+            'Columns: sex, age not defined, please define in: /participants.json',
+          line: null,
+          character: null,
+          reason:
+            'Tabular file contains custom columns not described in a data dictionary',
+          file: {
+            name: 'participants.tsv',
+            path: '/datalad/ds001032/participants.tsv',
+            relativePath: '/participants.tsv',
+            __typename: 'ValidationIssueFileDetail',
+          },
+          __typename: 'ValidationIssueFile',
+        },
+      ],
+      additionalFileCount: 0,
+      __typename: 'ValidationIssue',
+    },
+  ],
+  __typename: 'Snapshot',
+  hexsha: 'd62fdc42e2a568a6f89e33d68d3ef343ff883e02',
+  onBrainlife: false,
+}

package/src/scripts/fixtures/mock-app-wrapper.tsx

@@ -0,0 +1,18 @@
+import React, { useState } from 'react'
+import { MemoryRouter } from 'react-router-dom'
+import { UserModalOpenCtx } from '../utils/user-login-modal-ctx'
+import { MockedProvider } from '@apollo/client/testing'
+
+// Provide the basics needed to render complex components with mocked router, apollo, etc
+export const MockAppWrapper = ({ children }) => {
+  const [userModalOpen, setUserModalOpen] = useState(false)
+  return (
+    <MemoryRouter>
+      <MockedProvider>
+        <UserModalOpenCtx.Provider value={{ userModalOpen, setUserModalOpen }}>
+          {children}
+        </UserModalOpenCtx.Provider>
+      </MockedProvider>
+    </MemoryRouter>
+  )
+}