@openneuro/app 4.20.5 → 4.20.6-alpha.2

package/src/scripts/datalad/mutations/submit-metadata.jsx

@@ -1,9 +1,9 @@
-import React from 'react'
-import PropTypes from 'prop-types'
-import { gql } from '@apollo/client'
-import { Mutation } from '@apollo/client/react/components'
-import { DATASET_METADATA } from '../dataset/dataset-query-fragments.js'
-import { datasetCacheId } from './cache-id.js'
+import React from "react"
+import PropTypes from "prop-types"
+import { gql } from "@apollo/client"
+import { Mutation } from "@apollo/client/react/components"
+import { DATASET_METADATA } from "../dataset/dataset-query-fragments.js"
+import { datasetCacheId } from "./cache-id.js"
 
 export const SUBMIT_METADATA = gql`
   mutation addMetadata($datasetId: ID!, $metadata: MetadataInput!) {
@@ -43,25 +43,27 @@ const SubmitMetadata = ({ datasetId, metadata, done, disabled }) => (
         id: datasetCacheId(datasetId),
         fragment: DATASET_METADATA,
         data: {
-          __typename: 'Dataset',
+          __typename: "Dataset",
           id: datasetId,
           metadata: addMetadata,
         },
       })
-    }}>
-    {submitMetadata => (
+    }}
+  >
+    {(submitMetadata) => (
       <button
         type="submit"
         form="metadata-form"
-        className={`btn-modal-action${disabled ? ' btn-modal-danger' : ''}`}
+        className={`btn-modal-action${disabled ? " btn-modal-danger" : ""}`}
         disabled={disabled}
-        onClick={async e => {
+        onClick={async (e) => {
           e.preventDefault()
           await submitMetadata({
             variables: { datasetId, metadata },
           })
           done()
-        }}>
+        }}
+      >
         Submit Metadata
       </button>
     )}

package/src/scripts/datalad/mutations/update-permissions.jsx

@@ -1,10 +1,10 @@
-import React from 'react'
-import PropTypes from 'prop-types'
-import { gql } from '@apollo/client'
-import { Mutation } from '@apollo/client/react/components'
-import { toast } from 'react-toastify'
-import ToastContent from '../../common/partials/toast-content.jsx'
-import { validate as isValidEmail } from 'email-validator'
+import React from "react"
+import PropTypes from "prop-types"
+import { gql } from "@apollo/client"
+import { Mutation } from "@apollo/client/react/components"
+import { toast } from "react-toastify"
+import ToastContent from "../../common/partials/toast-content.jsx"
+import { validate as isValidEmail } from "email-validator"
 
 const UPDATE_PERMISSIONS = gql`
   mutation updatePermissions(
@@ -30,15 +30,15 @@ export const mergeNewPermission = (
   metadata,
 ) => {
   return {
-    __typename: 'Dataset',
+    __typename: "Dataset",
     id: datasetId,
     permissions: {
       ...oldPermissions,
       userPermissions: [
         ...oldPermissions.userPermissions,
         {
-          __typename: 'Permission',
-          user: { __typename: 'User', ...userInfo },
+          __typename: "Permission",
+          user: { __typename: "User", ...userInfo },
           level: metadata,
         },
       ],
@@ -48,7 +48,7 @@ export const mergeNewPermission = (
 
 const UpdateDatasetPermissions = ({ datasetId, userEmail, metadata, done }) => (
   <Mutation mutation={UPDATE_PERMISSIONS}>
-    {UpdateDatasetPermissions => (
+    {(UpdateDatasetPermissions) => (
       <button
         className="btn-modal-action"
         onClick={async () => {
@@ -68,7 +68,8 @@ const UpdateDatasetPermissions = ({ datasetId, userEmail, metadata, done }) => (
               <ToastContent body="Please enter a valid email address" />,
             )
           }
-        }}>
+        }}
+      >
         Share
       </button>
     )}
@@ -78,7 +79,7 @@ const UpdateDatasetPermissions = ({ datasetId, userEmail, metadata, done }) => (
 UpdateDatasetPermissions.propTypes = {
   datasetId: PropTypes.string,
   userEmail: PropTypes.string,
-  metadata: PropTypes.oneOf(['ro', 'rw', 'admin']),
+  metadata: PropTypes.oneOf(["ro", "rw", "admin"]),
   done: PropTypes.func,
 }
 

package/src/scripts/datalad/mutations/update-ref.jsx

@@ -1,7 +1,7 @@
-import React from 'react'
-import PropTypes from 'prop-types'
-import { gql } from '@apollo/client'
-import { Mutation } from '@apollo/client/react/components'
+import React from "react"
+import PropTypes from "prop-types"
+import { gql } from "@apollo/client"
+import { Mutation } from "@apollo/client/react/components"
 
 const RESET_DRAFT = gql`
   mutation resetDraft($datasetId: ID!, $ref: String!) {
@@ -11,7 +11,7 @@ const RESET_DRAFT = gql`
 
 const UpdateRef = ({ datasetId, revision }) => (
   <Mutation mutation={RESET_DRAFT}>
-    {resetDraft => (
+    {(resetDraft) => (
       <span>
         <button
           className="btn-admin-blue"
@@ -22,7 +22,8 @@ const UpdateRef = ({ datasetId, revision }) => (
                 ref: revision,
               },
             })
-          }}>
+          }}
+        >
           <i className="fa fa-history" /> Reset Draft Head
         </button>
       </span>

package/src/scripts/datalad/routes/dataset-redirect.tsx

@@ -1,54 +1,54 @@
-import React from 'react'
-import { Navigate, useParams, useLocation } from 'react-router-dom'
+import React from "react"
+import { Navigate, useLocation, useParams } from "react-router-dom"
 
 const redirectLib = {
-  ds001167: 'ds003782',
-  ds002777: 'ds003424',
-  ds001482: 'ds003146',
-  ds002895: 'ds003097',
-  ds003023: 'ds003085',
-  ds003028: 'ds003083',
-  ds002844: 'ds003078',
-  ds002941: 'ds003028',
-  ds001966: 'ds003012',
-  ds002683: 'ds002938',
-  ds001919: 'ds002902',
-  ds002393: 'ds002900',
-  ds001868: 'ds002904',
-  ds002355: 'ds002841',
-  ds001569: 'ds002848',
-  ds002221: 'ds002842',
-  ds001493: 'ds002797',
-  ds001505: 'ds002743',
-  ds001512: 'ds002739',
-  ds001544: 'ds002737',
-  ds001568: 'ds002735',
-  ds001611: 'ds002733',
-  ds001650: 'ds002731',
-  ds001996: 'ds002726',
-  ds002509: 'ds002741',
-  ds001219: 'ds002734',
-  ds002653: 'ds002728',
-  ds001165: 'ds002750',
-  ds001393: 'ds002738',
-  ds001934: 'ds002727',
-  ds002070: 'ds002711',
-  ds001985: 'ds002712',
-  ds002572: 'ds002647',
-  ds001782: 'ds002614',
-  ds002337: 'ds002606',
-  ds002319: 'ds002609',
-  ds001900: 'ds002608',
-  ds002317: 'ds002602',
-  ds002036: 'ds002596',
-  ds001851: 'ds002574',
-  ds001750: 'ds002550',
-  ds002068: 'ds002543',
-  ds002171: 'ds002380',
-  ds002078: 'ds002149',
-  ds002222: 'ds002250',
-  ds002245: 'ds002345',
-  ds001988: 'ds001996',
+  ds001167: "ds003782",
+  ds002777: "ds003424",
+  ds001482: "ds003146",
+  ds002895: "ds003097",
+  ds003023: "ds003085",
+  ds003028: "ds003083",
+  ds002844: "ds003078",
+  ds002941: "ds003028",
+  ds001966: "ds003012",
+  ds002683: "ds002938",
+  ds001919: "ds002902",
+  ds002393: "ds002900",
+  ds001868: "ds002904",
+  ds002355: "ds002841",
+  ds001569: "ds002848",
+  ds002221: "ds002842",
+  ds001493: "ds002797",
+  ds001505: "ds002743",
+  ds001512: "ds002739",
+  ds001544: "ds002737",
+  ds001568: "ds002735",
+  ds001611: "ds002733",
+  ds001650: "ds002731",
+  ds001996: "ds002726",
+  ds002509: "ds002741",
+  ds001219: "ds002734",
+  ds002653: "ds002728",
+  ds001165: "ds002750",
+  ds001393: "ds002738",
+  ds001934: "ds002727",
+  ds002070: "ds002711",
+  ds001985: "ds002712",
+  ds002572: "ds002647",
+  ds001782: "ds002614",
+  ds002337: "ds002606",
+  ds002319: "ds002609",
+  ds001900: "ds002608",
+  ds002317: "ds002602",
+  ds002036: "ds002596",
+  ds001851: "ds002574",
+  ds001750: "ds002550",
+  ds002068: "ds002543",
+  ds002171: "ds002380",
+  ds002078: "ds002149",
+  ds002222: "ds002250",
+  ds002245: "ds002345",
+  ds001988: "ds001996",
 }
 
 const datasetIdPattern = /ds\d{6}/gim

package/src/scripts/datalad/subscriptions/__tests__/files-subscription.spec.jsx

@@ -1,13 +1,13 @@
-import React from 'react'
-import { render } from '@testing-library/react'
-import { MockedProvider } from '@apollo/client/testing'
+import React from "react"
+import { render } from "@testing-library/react"
+import { MockedProvider } from "@apollo/client/testing"
 import FilesSubscription, {
   deleteFilesReducer,
   updateFilesReducer,
-} from '../files-subscription.jsx'
+} from "../files-subscription.jsx"
 
-describe('FilesSubscription', () => {
-  it('renders with common props', () => {
+describe("FilesSubscription", () => {
+  it("renders with common props", () => {
     const { asFragment } = render(<FilesSubscription datasetId="ds001" />, {
       wrapper: MockedProvider,
     })
@@ -15,64 +15,64 @@ describe('FilesSubscription', () => {
   })
 })
 
-describe('deleteFilesReducer', () => {
+describe("deleteFilesReducer", () => {
   let draft, filesToDelete
   beforeEach(() => {
     draft = {
       a: 1,
       files: [
-        { filename: 'deleted/file.txt' },
-        { filename: 'another_deleted_file.txt' },
-        { filename: 'path/to/file.txt' },
-        { filename: 'deleted/file/again/here' },
+        { filename: "deleted/file.txt" },
+        { filename: "another_deleted_file.txt" },
+        { filename: "path/to/file.txt" },
+        { filename: "deleted/file/again/here" },
       ],
-      steak: 'sauce',
+      steak: "sauce",
     }
     filesToDelete = [
-      { filename: 'deleted' },
-      { filename: 'another_deleted_file.txt' },
+      { filename: "deleted" },
+      { filename: "another_deleted_file.txt" },
     ]
   })
-  it('removes files from draft', () => {
+  it("removes files from draft", () => {
     const output = deleteFilesReducer(filesToDelete, draft)
     expect(output).toEqual({
       a: 1,
-      files: [{ filename: 'path/to/file.txt' }],
-      steak: 'sauce',
+      files: [{ filename: "path/to/file.txt" }],
+      steak: "sauce",
     })
   })
 })
 
-describe('updateFilesReducer', () => {
+describe("updateFilesReducer", () => {
   let draft, filesToUpdate
   beforeEach(() => {
     draft = {
       a: 1,
       files: [
-        { filename: 'updated/file.txt', id: 'something' },
-        { filename: 'a.txt' },
-        { filename: 'b' },
+        { filename: "updated/file.txt", id: "something" },
+        { filename: "a.txt" },
+        { filename: "b" },
       ],
-      steak: 'sauce',
+      steak: "sauce",
     }
     filesToUpdate = [
-      { filename: 'updated:file.txt', id: 'somethingelse' },
-      { filename: 'new:file.txt', id: 'x' },
-      { filename: 'another:new:file', id: 'y' },
+      { filename: "updated:file.txt", id: "somethingelse" },
+      { filename: "new:file.txt", id: "x" },
+      { filename: "another:new:file", id: "y" },
     ]
   })
-  it('removes files from draft', () => {
+  it("removes files from draft", () => {
     const output = updateFilesReducer(filesToUpdate, draft)
     expect(output).toEqual({
       a: 1,
       files: [
-        { filename: 'updated/file.txt', id: 'somethingelse' },
-        { filename: 'a.txt' },
-        { filename: 'b' },
-        { filename: 'new/file.txt', id: 'x' },
-        { filename: 'another/new/file', id: 'y' },
+        { filename: "updated/file.txt", id: "somethingelse" },
+        { filename: "a.txt" },
+        { filename: "b" },
+        { filename: "new/file.txt", id: "x" },
+        { filename: "another/new/file", id: "y" },
       ],
-      steak: 'sauce',
+      steak: "sauce",
     })
   })
 })

package/src/scripts/datalad/subscriptions/files-subscription.jsx

@@ -1,9 +1,9 @@
-import React from 'react'
-import PropTypes from 'prop-types'
-import { Subscription } from '@apollo/client/react/components'
-import { gql } from '@apollo/client'
-import { DRAFT_FILES_FRAGMENT } from '../dataset/dataset-query-fragments.js'
-import { datasetCacheId } from '../mutations/cache-id.js'
+import React from "react"
+import PropTypes from "prop-types"
+import { Subscription } from "@apollo/client/react/components"
+import { gql } from "@apollo/client"
+import { DRAFT_FILES_FRAGMENT } from "../dataset/dataset-query-fragments.js"
+import { datasetCacheId } from "../mutations/cache-id.js"
 // import { datasetCacheId } from '../mutations/cache-id.js'
 
 const FILES_SUBSCRIPTION = gql`
@@ -28,24 +28,24 @@ const FILES_SUBSCRIPTION = gql`
  */
 export const deleteFilesReducer = (files, draft) => {
   const pathMatch = files
-    .map(({ filename }) => filename.split(':').join('\\/'))
-    .join('|')
+    .map(({ filename }) => filename.split(":").join("\\/"))
+    .join("|")
   return {
     ...draft,
-    files: draft.files.filter(file => !file.filename.match(pathMatch)),
+    files: draft.files.filter((file) => !file.filename.match(pathMatch)),
   }
 }
 
 export const updateFilesReducer = (files, draft) => {
-  files = files.map(file => ({
+  files = files.map((file) => ({
     ...file,
-    filename: file.filename.split(':').join('/'),
+    filename: file.filename.split(":").join("/"),
   }))
   const newFiles = []
   const draftFiles = [...draft.files]
-  files.forEach(file => {
+  files.forEach((file) => {
     const updatedFileIndex = draftFiles.findIndex(
-      draftFile =>
+      (draftFile) =>
         draftFile.filename === file.filename || draftFile.id === file.id,
     )
     if (updatedFileIndex === -1) newFiles.push(file)
@@ -59,9 +59,9 @@ export const updateFilesReducer = (files, draft) => {
 
 export const draftReducer = (draft, action, payload) => {
   switch (action) {
-    case 'DELETE':
+    case "DELETE":
       return deleteFilesReducer(payload, draft)
-    case 'UPDATE':
+    case "UPDATE":
       return updateFilesReducer(payload, draft)
     default:
       return { ...draft }
@@ -87,7 +87,7 @@ const FilesSubscription = ({ datasetId }) => (
             id,
             fragment: DRAFT_FILES_FRAGMENT,
             data: {
-              __typename: 'Dataset',
+              __typename: "Dataset",
               id: datasetId,
               draft: updatedDraft,
             },

package/src/scripts/datalad/subscriptions/useDatasetDeletedSubscription.jsx

@@ -1,8 +1,8 @@
-import React from 'react'
-import { useSubscription, gql } from '@apollo/client'
+import React from "react"
+import { gql, useSubscription } from "@apollo/client"
 
-import { toast } from 'react-toastify'
-import ToastContent from '../../common/partials/toast-content.jsx'
+import { toast } from "react-toastify"
+import ToastContent from "../../common/partials/toast-content.jsx"
 
 const DATASET_DELETED_SUBSCRIPTION = gql`
   subscription datasetDeleted($datasetIds: [ID!]) {

package/src/scripts/datalad/subscriptions/useDraftSubscription.js

@@ -1,9 +1,9 @@
-import { useSubscription, gql } from '@apollo/client'
+import { gql, useSubscription } from "@apollo/client"
 
 import {
-  DRAFT_FRAGMENT,
   DATASET_ISSUES,
-} from '../dataset/dataset-query-fragments.js'
+  DRAFT_FRAGMENT,
+} from "../dataset/dataset-query-fragments.js"
 
 const DRAFT_SUBSCRIPTION = gql`
   subscription draftUpdated($datasetId: ID!) {
@@ -17,7 +17,7 @@ const DRAFT_SUBSCRIPTION = gql`
   ${DATASET_ISSUES}
 `
 
-const useDraftSubscription = datasetId =>
+const useDraftSubscription = (datasetId) =>
   useSubscription(DRAFT_SUBSCRIPTION, {
     variables: { datasetId },
     shouldResubscribe: true,

package/src/scripts/datalad/subscriptions/usePermissionsSubscription.js

@@ -1,6 +1,6 @@
-import { useSubscription, gql } from '@apollo/client'
+import { gql, useSubscription } from "@apollo/client"
 
-import { PERMISSION_FRAGMENT } from '../dataset/dataset-query-fragments.js'
+import { PERMISSION_FRAGMENT } from "../dataset/dataset-query-fragments.js"
 
 const PERMISSIONS_SUBSCRIPTION = gql`
   subscription permissionsUpdated($datasetIds: [ID!]) {
@@ -12,9 +12,9 @@ const PERMISSIONS_SUBSCRIPTION = gql`
   ${PERMISSION_FRAGMENT}
 `
 
-const usePermissionsSubscription = datasetIds =>
+const usePermissionsSubscription = (datasetIds) =>
   useSubscription(PERMISSIONS_SUBSCRIPTION, {
-    variables: { datasetIds: datasetIds || ['NULL_ID'] },
+    variables: { datasetIds: datasetIds || ["NULL_ID"] },
     shouldResubscribe: true,
   })
 

package/src/scripts/datalad/subscriptions/useSnapshotsUpdatedSubscriptions.js

@@ -1,6 +1,6 @@
-import { useSubscription, gql } from '@apollo/client'
+import { gql, useSubscription } from "@apollo/client"
 
-import { DATASET_SNAPSHOTS } from '../dataset/dataset-query-fragments.js'
+import { DATASET_SNAPSHOTS } from "../dataset/dataset-query-fragments.js"
 
 export const SNAPSHOTS_UPDATED_SUBSCRIPTION = gql`
   subscription snapshotsUpdated($datasetId: ID!) {
@@ -12,7 +12,7 @@ export const SNAPSHOTS_UPDATED_SUBSCRIPTION = gql`
   ${DATASET_SNAPSHOTS}
 `
 
-const useSnapshotsUpdatedSubscription = datasetId =>
+const useSnapshotsUpdatedSubscription = (datasetId) =>
   useSubscription(SNAPSHOTS_UPDATED_SUBSCRIPTION, {
     variables: { datasetId },
     shouldResubscribe: true,

package/src/scripts/dataset/__tests__/__snapshots__/snapshot-container.spec.tsx.snap

@@ -258,7 +258,7 @@ exports[`SnapshotContainer component > renders successfully 1`] = `
                                         >
                                           <span>
                                             <label>
-                                              Location: 
+                                              Location:
                                             </label>
                                             <p>
                                               /participants.tsv
@@ -269,7 +269,7 @@ exports[`SnapshotContainer component > renders successfully 1`] = `
                                           class="e-meta"
                                         >
                                           <label>
-                                            Reason: 
+                                            Reason:
                                           </label>
                                           <p>
                                             Tabular file contains custom columns not described in a data dictionary

package/src/scripts/dataset/__tests__/snapshot-container.spec.tsx

@@ -1,27 +1,27 @@
-import React from 'react'
-import { render } from '@testing-library/react'
-import Helmet from 'react-helmet'
-import { SnapshotContainer } from '../snapshot-container'
-import { MockAppWrapper } from '../../fixtures/mock-app-wrapper'
-import { dataset, snapshot } from '../../fixtures/dataset-query'
-import { vi } from 'vitest'
+import React from "react"
+import { render } from "@testing-library/react"
+import Helmet from "react-helmet"
+import { SnapshotContainer } from "../snapshot-container"
+import { MockAppWrapper } from "../../fixtures/mock-app-wrapper"
+import { dataset, snapshot } from "../../fixtures/dataset-query"
+import { vi } from "vitest"
 
-vi.mock('../../config.ts')
+vi.mock("../../config.ts")
 
 const defProps = {
   dataset,
   snapshot,
-  tag: '1.0.0',
+  tag: "1.0.0",
 }
 
-describe('SnapshotContainer component', () => {
-  it('renders successfully', () => {
+describe("SnapshotContainer component", () => {
+  it("renders successfully", () => {
     const { asFragment } = render(<SnapshotContainer {...defProps} />, {
       wrapper: MockAppWrapper,
     })
     expect(asFragment()).toMatchSnapshot()
   })
-  it('includes JSON-LD data in the header', () => {
+  it("includes JSON-LD data in the header", () => {
     render(<SnapshotContainer {...defProps} />, {
       wrapper: MockAppWrapper,
     })

package/src/scripts/dataset/comments/__tests__/comment.spec.jsx

@@ -1,48 +1,48 @@
-import React from 'react'
-import { render } from '@testing-library/react'
-import Comment from '../comment.jsx'
-import formatDistanceToNow from 'date-fns/formatDistanceToNow'
+import React from "react"
+import { render } from "@testing-library/react"
+import Comment from "../comment.jsx"
+import formatDistanceToNow from "date-fns/formatDistanceToNow"
 
-vi.mock('date-fns/formatDistanceToNow')
+vi.mock("date-fns/formatDistanceToNow")
 
 const emptyState =
   '{"blocks":[{"key":"3sm42","text":"","type":"unstyled","depth":0,"inlineStyleRanges":[],"entityRanges":[],"data":{}}],"entityMap":{}}'
 
-describe('Comment component', () => {
-  it('renders with an empty comment', () => {
-    formatDistanceToNow.mockReturnValueOnce('almost 2 years')
+describe("Comment component", () => {
+  it("renders with an empty comment", () => {
+    formatDistanceToNow.mockReturnValueOnce("almost 2 years")
 
     const wrapper = render(
       <Comment
         data={{
-          id: '9001',
+          id: "9001",
           text: emptyState,
           user: {
-            id: '1234',
-            email: 'example@example.com',
-            name: 'Example Exampler',
+            id: "1234",
+            email: "example@example.com",
+            name: "Example Exampler",
           },
-          createDate: new Date('2019-04-02T19:56:41.222Z').toISOString(),
+          createDate: new Date("2019-04-02T19:56:41.222Z").toISOString(),
         }}
       />,
     )
     expect(wrapper).toMatchSnapshot()
   })
-  it('renders an ORCID user comment', () => {
-    formatDistanceToNow.mockReturnValueOnce('almost 2 years')
+  it("renders an ORCID user comment", () => {
+    formatDistanceToNow.mockReturnValueOnce("almost 2 years")
 
     const wrapper = render(
       <Comment
         data={{
-          id: '9001',
+          id: "9001",
           text: emptyState,
           user: {
-            id: '1234',
-            email: 'example@example.com',
-            name: 'Example Exampler',
-            orcid: '1234-5678-9101',
+            id: "1234",
+            email: "example@example.com",
+            name: "Example Exampler",
+            orcid: "1234-5678-9101",
           },
-          createDate: new Date('2019-04-02T19:56:41.222Z').toISOString(),
+          createDate: new Date("2019-04-02T19:56:41.222Z").toISOString(),
         }}
       />,
     )