@openmrs/esm-patient-tests-app 11.3.1-pre.9277 → 11.3.1-pre.9283

package/src/test-results/loadPatientTestData/helpers.test.ts

@@ -0,0 +1,834 @@
+import type { ObsRecord } from '@openmrs/esm-patient-common-lib';
+import { extractObservationReferenceRanges, extractObservationInterpretation } from './helpers';
+import type { FHIRObservationResource } from '../../types';
+
+describe('Observation Extraction Helpers', () => {
+  describe('extractObservationReferenceRanges', () => {
+    it('returns undefined when referenceRange is missing', () => {
+      const resource: FHIRObservationResource = {
+        resourceType: 'Observation',
+        id: 'test-id',
+        category: [],
+        code: { coding: [], text: '' },
+        effectiveDateTime: '2024-01-01',
+        issued: '2024-01-01',
+        referenceRange: [],
+      };
+
+      expect(extractObservationReferenceRanges(resource)).toBeUndefined();
+    });
+
+    it('returns undefined when referenceRange is empty array', () => {
+      const resource: FHIRObservationResource = {
+        resourceType: 'Observation',
+        id: 'test-id',
+        category: [],
+        code: { coding: [], text: '' },
+        effectiveDateTime: '2024-01-01',
+        issued: '2024-01-01',
+        referenceRange: [],
+      };
+
+      expect(extractObservationReferenceRanges(resource)).toBeUndefined();
+    });
+
+    it('extracts normal ranges from HL7 referencerange-meaning system', () => {
+      const resource: FHIRObservationResource = {
+        resourceType: 'Observation',
+        id: 'test-id',
+        category: [],
+        code: { coding: [], text: '' },
+        effectiveDateTime: '2024-01-01',
+        issued: '2024-01-01',
+        referenceRange: [
+          {
+            type: {
+              coding: [
+                {
+                  system: 'http://terminology.hl7.org/CodeSystem/referencerange-meaning',
+                  code: 'normal',
+                },
+              ],
+            },
+            low: { value: 0 },
+            high: { value: 50 },
+          },
+        ],
+        valueQuantity: {
+          value: 25,
+          unit: 'mg/dL',
+          system: 'http://unitsofmeasure.org',
+          code: 'mg/dL',
+        },
+      };
+
+      const result = extractObservationReferenceRanges(resource);
+
+      expect(result).toEqual({
+        lowNormal: 0,
+        hiNormal: 50,
+        units: 'mg/dL',
+      });
+    });
+
+    it('extracts treatment ranges from HL7 referencerange-meaning system', () => {
+      const resource: FHIRObservationResource = {
+        resourceType: 'Observation',
+        id: 'test-id',
+        category: [],
+        code: { coding: [], text: '' },
+        effectiveDateTime: '2024-01-01',
+        issued: '2024-01-01',
+        referenceRange: [
+          {
+            type: {
+              coding: [
+                {
+                  system: 'http://terminology.hl7.org/CodeSystem/referencerange-meaning',
+                  code: 'treatment',
+                },
+              ],
+            },
+            low: { value: 25 },
+            high: { value: 541 },
+          },
+        ],
+        valueQuantity: {
+          value: 30,
+          unit: 'U/L',
+          system: 'http://unitsofmeasure.org',
+          code: 'U/L',
+        },
+      };
+
+      const result = extractObservationReferenceRanges(resource);
+
+      expect(result).toEqual({
+        lowCritical: 25,
+        hiCritical: 541,
+        units: 'U/L',
+      });
+    });
+
+    it('extracts absolute ranges from OpenMRS extension system', () => {
+      const resource: FHIRObservationResource = {
+        resourceType: 'Observation',
+        id: 'test-id',
+        category: [],
+        code: { coding: [], text: '' },
+        effectiveDateTime: '2024-01-01',
+        issued: '2024-01-01',
+        referenceRange: [
+          {
+            type: {
+              coding: [
+                {
+                  system: 'http://fhir.openmrs.org/ext/obs/reference-range',
+                  code: 'absolute',
+                },
+              ],
+            },
+            low: { value: -10 },
+            high: { value: 100 },
+          },
+        ],
+        valueQuantity: {
+          value: 50,
+          unit: 'mg/dL',
+          system: 'http://unitsofmeasure.org',
+          code: 'mg/dL',
+        },
+      };
+
+      const result = extractObservationReferenceRanges(resource);
+
+      expect(result).toEqual({
+        lowAbsolute: -10,
+        hiAbsolute: 100,
+        units: 'mg/dL',
+      });
+    });
+
+    it('handles multiple range types in single observation', () => {
+      const resource: FHIRObservationResource = {
+        resourceType: 'Observation',
+        id: 'test-id',
+        category: [],
+        code: { coding: [], text: '' },
+        effectiveDateTime: '2024-01-01',
+        issued: '2024-01-01',
+        referenceRange: [
+          {
+            type: {
+              coding: [
+                {
+                  system: 'http://terminology.hl7.org/CodeSystem/referencerange-meaning',
+                  code: 'normal',
+                },
+              ],
+            },
+            low: { value: 0 },
+            high: { value: 50 },
+          },
+          {
+            type: {
+              coding: [
+                {
+                  system: 'http://terminology.hl7.org/CodeSystem/referencerange-meaning',
+                  code: 'treatment',
+                },
+              ],
+            },
+            low: { value: 25 },
+            high: { value: 541 },
+          },
+        ],
+        valueQuantity: {
+          value: 30,
+          unit: 'U/L',
+          system: 'http://unitsofmeasure.org',
+          code: 'U/L',
+        },
+      };
+
+      const result = extractObservationReferenceRanges(resource);
+
+      expect(result).toEqual({
+        lowNormal: 0,
+        hiNormal: 50,
+        lowCritical: 25,
+        hiCritical: 541,
+        units: 'U/L',
+      });
+    });
+
+    it('handles partial ranges (only high or only low)', () => {
+      const resource: FHIRObservationResource = {
+        resourceType: 'Observation',
+        id: 'test-id',
+        category: [],
+        code: { coding: [], text: '' },
+        effectiveDateTime: '2024-01-01',
+        issued: '2024-01-01',
+        referenceRange: [
+          {
+            type: {
+              coding: [
+                {
+                  system: 'http://terminology.hl7.org/CodeSystem/referencerange-meaning',
+                  code: 'normal',
+                },
+              ],
+            },
+            high: { value: 50 },
+          },
+        ],
+        valueQuantity: {
+          value: 25,
+          unit: 'mg/dL',
+          system: 'http://unitsofmeasure.org',
+          code: 'mg/dL',
+        },
+      };
+
+      const result = extractObservationReferenceRanges(resource);
+
+      expect(result).toEqual({
+        hiNormal: 50,
+        units: 'mg/dL',
+      });
+    });
+
+    it('returns undefined when no valid range values are found', () => {
+      const resource: FHIRObservationResource = {
+        resourceType: 'Observation',
+        id: 'test-id',
+        category: [],
+        code: { coding: [], text: '' },
+        effectiveDateTime: '2024-01-01',
+        issued: '2024-01-01',
+        referenceRange: [
+          {
+            type: {
+              coding: [
+                {
+                  system: 'http://unknown.system',
+                  code: 'unknown',
+                },
+              ],
+            },
+          },
+        ],
+      };
+
+      expect(extractObservationReferenceRanges(resource)).toBeUndefined();
+    });
+
+    it('handles ObsRecord type input', () => {
+      const obsRecord: ObsRecord = {
+        resourceType: 'Observation',
+        id: 'test-id',
+        category: [],
+        code: { coding: [], text: '' },
+        effectiveDateTime: '2024-01-01',
+        issued: '2024-01-01',
+        encounter: {
+          reference: 'Encounter/test-encounter',
+          type: 'Encounter',
+        },
+        referenceRange: [
+          {
+            type: {
+              coding: [
+                {
+                  system: 'http://terminology.hl7.org/CodeSystem/referencerange-meaning',
+                  code: 'normal',
+                },
+              ],
+            },
+            low: { value: 0 },
+            high: { value: 50 },
+          },
+        ],
+        valueQuantity: {
+          value: 25,
+          unit: 'mg/dL',
+          system: 'http://unitsofmeasure.org',
+          code: 'mg/dL',
+        },
+        conceptClass: 'test-uuid',
+        value: '25',
+        name: 'Test',
+        interpretation: 'NORMAL' as const,
+      };
+
+      const result = extractObservationReferenceRanges(obsRecord);
+
+      expect(result).toEqual({
+        lowNormal: 0,
+        hiNormal: 50,
+        units: 'mg/dL',
+      });
+    });
+
+    it('handles missing valueQuantity units', () => {
+      const resource: FHIRObservationResource = {
+        resourceType: 'Observation',
+        id: 'test-id',
+        category: [],
+        code: { coding: [], text: '' },
+        effectiveDateTime: '2024-01-01',
+        issued: '2024-01-01',
+        referenceRange: [
+          {
+            type: {
+              coding: [
+                {
+                  system: 'http://terminology.hl7.org/CodeSystem/referencerange-meaning',
+                  code: 'normal',
+                },
+              ],
+            },
+            low: { value: 0 },
+            high: { value: 50 },
+          },
+        ],
+      };
+
+      const result = extractObservationReferenceRanges(resource);
+
+      expect(result).toEqual({
+        lowNormal: 0,
+        hiNormal: 50,
+        units: undefined,
+      });
+    });
+  });
+
+  describe('extractObservationInterpretation', () => {
+    it('returns undefined when interpretation is missing', () => {
+      const resource: FHIRObservationResource = {
+        resourceType: 'Observation',
+        id: 'test-id',
+        category: [],
+        code: { coding: [], text: '' },
+        effectiveDateTime: '2024-01-01',
+        issued: '2024-01-01',
+        referenceRange: [],
+      };
+
+      expect(extractObservationInterpretation(resource)).toBeUndefined();
+    });
+
+    it('returns undefined when interpretation is empty array', () => {
+      const resource: FHIRObservationResource = {
+        resourceType: 'Observation',
+        id: 'test-id',
+        category: [],
+        code: { coding: [], text: '' },
+        effectiveDateTime: '2024-01-01',
+        issued: '2024-01-01',
+        referenceRange: [],
+        interpretation: [],
+      };
+
+      expect(extractObservationInterpretation(resource)).toBeUndefined();
+    });
+
+    describe('HL7 v3 ObservationInterpretation codes', () => {
+      it('maps LL to CRITICALLY_LOW', () => {
+        const resource: FHIRObservationResource = {
+          resourceType: 'Observation',
+          id: 'test-id',
+          category: [],
+          code: { coding: [], text: '' },
+          effectiveDateTime: '2024-01-01',
+          issued: '2024-01-01',
+          referenceRange: [],
+          interpretation: [
+            {
+              coding: [{ code: 'LL', display: 'Critically Low' }],
+            },
+          ],
+        };
+
+        expect(extractObservationInterpretation(resource)).toBe('CRITICALLY_LOW');
+      });
+
+      it('maps HH to CRITICALLY_HIGH', () => {
+        const resource: FHIRObservationResource = {
+          resourceType: 'Observation',
+          id: 'test-id',
+          category: [],
+          code: { coding: [], text: '' },
+          effectiveDateTime: '2024-01-01',
+          issued: '2024-01-01',
+          referenceRange: [],
+          interpretation: [
+            {
+              coding: [{ code: 'HH', display: 'Critically High' }],
+            },
+          ],
+        };
+
+        expect(extractObservationInterpretation(resource)).toBe('CRITICALLY_HIGH');
+      });
+
+      it('maps L to LOW', () => {
+        const resource: FHIRObservationResource = {
+          resourceType: 'Observation',
+          id: 'test-id',
+          category: [],
+          code: { coding: [], text: '' },
+          effectiveDateTime: '2024-01-01',
+          issued: '2024-01-01',
+          referenceRange: [],
+          interpretation: [
+            {
+              coding: [{ code: 'L', display: 'Low' }],
+            },
+          ],
+        };
+
+        expect(extractObservationInterpretation(resource)).toBe('LOW');
+      });
+
+      it('maps H to HIGH', () => {
+        const resource: FHIRObservationResource = {
+          resourceType: 'Observation',
+          id: 'test-id',
+          category: [],
+          code: { coding: [], text: '' },
+          effectiveDateTime: '2024-01-01',
+          issued: '2024-01-01',
+          referenceRange: [],
+          interpretation: [
+            {
+              coding: [{ code: 'H', display: 'High' }],
+            },
+          ],
+        };
+
+        expect(extractObservationInterpretation(resource)).toBe('HIGH');
+      });
+
+      it('maps N to NORMAL', () => {
+        const resource: FHIRObservationResource = {
+          resourceType: 'Observation',
+          id: 'test-id',
+          category: [],
+          code: { coding: [], text: '' },
+          effectiveDateTime: '2024-01-01',
+          issued: '2024-01-01',
+          referenceRange: [],
+          interpretation: [
+            {
+              coding: [{ code: 'N', display: 'Normal' }],
+            },
+          ],
+        };
+
+        expect(extractObservationInterpretation(resource)).toBe('NORMAL');
+      });
+
+      it('maps LU to OFF_SCALE_LOW', () => {
+        const resource: FHIRObservationResource = {
+          resourceType: 'Observation',
+          id: 'test-id',
+          category: [],
+          code: { coding: [], text: '' },
+          effectiveDateTime: '2024-01-01',
+          issued: '2024-01-01',
+          referenceRange: [],
+          interpretation: [
+            {
+              coding: [{ code: 'LU', display: 'Off Scale Low' }],
+            },
+          ],
+        };
+
+        expect(extractObservationInterpretation(resource)).toBe('OFF_SCALE_LOW');
+      });
+
+      it('maps HU to OFF_SCALE_HIGH', () => {
+        const resource: FHIRObservationResource = {
+          resourceType: 'Observation',
+          id: 'test-id',
+          category: [],
+          code: { coding: [], text: '' },
+          effectiveDateTime: '2024-01-01',
+          issued: '2024-01-01',
+          referenceRange: [],
+          interpretation: [
+            {
+              coding: [{ code: 'HU', display: 'Off Scale High' }],
+            },
+          ],
+        };
+
+        expect(extractObservationInterpretation(resource)).toBe('OFF_SCALE_HIGH');
+      });
+
+      it('handles case-insensitive codes', () => {
+        const resource: FHIRObservationResource = {
+          resourceType: 'Observation',
+          id: 'test-id',
+          category: [],
+          code: { coding: [], text: '' },
+          effectiveDateTime: '2024-01-01',
+          issued: '2024-01-01',
+          referenceRange: [],
+          interpretation: [
+            {
+              coding: [{ code: 'll', display: 'Critically Low' }],
+            },
+          ],
+        };
+
+        expect(extractObservationInterpretation(resource)).toBe('CRITICALLY_LOW');
+      });
+    });
+
+    describe('Display value mapping', () => {
+      it('maps "Critically Low" to CRITICALLY_LOW', () => {
+        const resource: FHIRObservationResource = {
+          resourceType: 'Observation',
+          id: 'test-id',
+          category: [],
+          code: { coding: [], text: '' },
+          effectiveDateTime: '2024-01-01',
+          issued: '2024-01-01',
+          referenceRange: [],
+          interpretation: [
+            {
+              coding: [{ code: 'UNKNOWN', display: 'Critically Low' }],
+            },
+          ],
+        };
+
+        expect(extractObservationInterpretation(resource)).toBe('CRITICALLY_LOW');
+      });
+
+      it('maps "Critically High" to CRITICALLY_HIGH', () => {
+        const resource: FHIRObservationResource = {
+          resourceType: 'Observation',
+          id: 'test-id',
+          category: [],
+          code: { coding: [], text: '' },
+          effectiveDateTime: '2024-01-01',
+          issued: '2024-01-01',
+          referenceRange: [],
+          interpretation: [
+            {
+              coding: [{ code: 'UNKNOWN', display: 'Critically High' }],
+            },
+          ],
+        };
+
+        expect(extractObservationInterpretation(resource)).toBe('CRITICALLY_HIGH');
+      });
+
+      it('maps "Low" to LOW', () => {
+        const resource: FHIRObservationResource = {
+          resourceType: 'Observation',
+          id: 'test-id',
+          category: [],
+          code: { coding: [], text: '' },
+          effectiveDateTime: '2024-01-01',
+          issued: '2024-01-01',
+          referenceRange: [],
+          interpretation: [
+            {
+              coding: [{ code: 'UNKNOWN', display: 'Low' }],
+            },
+          ],
+        };
+
+        expect(extractObservationInterpretation(resource)).toBe('LOW');
+      });
+
+      it('maps "High" to HIGH', () => {
+        const resource: FHIRObservationResource = {
+          resourceType: 'Observation',
+          id: 'test-id',
+          category: [],
+          code: { coding: [], text: '' },
+          effectiveDateTime: '2024-01-01',
+          issued: '2024-01-01',
+          referenceRange: [],
+          interpretation: [
+            {
+              coding: [{ code: 'UNKNOWN', display: 'High' }],
+            },
+          ],
+        };
+
+        expect(extractObservationInterpretation(resource)).toBe('HIGH');
+      });
+
+      it('maps "Normal" to NORMAL', () => {
+        const resource: FHIRObservationResource = {
+          resourceType: 'Observation',
+          id: 'test-id',
+          category: [],
+          code: { coding: [], text: '' },
+          effectiveDateTime: '2024-01-01',
+          issued: '2024-01-01',
+          referenceRange: [],
+          interpretation: [
+            {
+              coding: [{ code: 'UNKNOWN', display: 'Normal' }],
+            },
+          ],
+        };
+
+        expect(extractObservationInterpretation(resource)).toBe('NORMAL');
+      });
+
+      it('maps "Off Scale Low" to OFF_SCALE_LOW', () => {
+        const resource: FHIRObservationResource = {
+          resourceType: 'Observation',
+          id: 'test-id',
+          category: [],
+          code: { coding: [], text: '' },
+          effectiveDateTime: '2024-01-01',
+          issued: '2024-01-01',
+          referenceRange: [],
+          interpretation: [
+            {
+              coding: [{ code: 'UNKNOWN', display: 'Off Scale Low' }],
+            },
+          ],
+        };
+
+        expect(extractObservationInterpretation(resource)).toBe('OFF_SCALE_LOW');
+      });
+
+      it('maps "Off Scale High" to OFF_SCALE_HIGH', () => {
+        const resource: FHIRObservationResource = {
+          resourceType: 'Observation',
+          id: 'test-id',
+          category: [],
+          code: { coding: [], text: '' },
+          effectiveDateTime: '2024-01-01',
+          issued: '2024-01-01',
+          referenceRange: [],
+          interpretation: [
+            {
+              coding: [{ code: 'UNKNOWN', display: 'Off Scale High' }],
+            },
+          ],
+        };
+
+        expect(extractObservationInterpretation(resource)).toBe('OFF_SCALE_HIGH');
+      });
+
+      it('handles case-insensitive display values', () => {
+        const resource: FHIRObservationResource = {
+          resourceType: 'Observation',
+          id: 'test-id',
+          category: [],
+          code: { coding: [], text: '' },
+          effectiveDateTime: '2024-01-01',
+          issued: '2024-01-01',
+          referenceRange: [],
+          interpretation: [
+            {
+              coding: [{ code: 'UNKNOWN', display: 'CRITICALLY LOW' }],
+            },
+          ],
+        };
+
+        expect(extractObservationInterpretation(resource)).toBe('CRITICALLY_LOW');
+      });
+
+      it('handles display values with extra whitespace', () => {
+        const resource: FHIRObservationResource = {
+          resourceType: 'Observation',
+          id: 'test-id',
+          category: [],
+          code: { coding: [], text: '' },
+          effectiveDateTime: '2024-01-01',
+          issued: '2024-01-01',
+          referenceRange: [],
+          interpretation: [
+            {
+              coding: [{ code: 'UNKNOWN', display: '  Critically Low  ' }],
+            },
+          ],
+        };
+
+        expect(extractObservationInterpretation(resource)).toBe('CRITICALLY_LOW');
+      });
+    });
+
+    describe('Fallback behavior', () => {
+      it('falls back to display when code is unknown', () => {
+        const resource: FHIRObservationResource = {
+          resourceType: 'Observation',
+          id: 'test-id',
+          category: [],
+          code: { coding: [], text: '' },
+          effectiveDateTime: '2024-01-01',
+          issued: '2024-01-01',
+          referenceRange: [],
+          interpretation: [
+            {
+              coding: [{ code: 'UNKNOWN_CODE', display: 'High' }],
+            },
+          ],
+        };
+
+        expect(extractObservationInterpretation(resource)).toBe('HIGH');
+      });
+
+      it('falls back to text when coding is missing', () => {
+        const resource: FHIRObservationResource = {
+          resourceType: 'Observation',
+          id: 'test-id',
+          category: [],
+          code: { coding: [], text: '' },
+          effectiveDateTime: '2024-01-01',
+          issued: '2024-01-01',
+          referenceRange: [],
+          interpretation: [
+            {
+              coding: [],
+              text: 'Normal',
+            },
+          ],
+        };
+
+        expect(extractObservationInterpretation(resource)).toBe('NORMAL');
+      });
+
+      it('returns undefined for unknown codes and displays', () => {
+        const resource: FHIRObservationResource = {
+          resourceType: 'Observation',
+          id: 'test-id',
+          category: [],
+          code: { coding: [], text: '' },
+          effectiveDateTime: '2024-01-01',
+          issued: '2024-01-01',
+          referenceRange: [],
+          interpretation: [
+            {
+              coding: [{ code: 'UNKNOWN', display: 'Unknown Value' }],
+            },
+          ],
+        };
+
+        expect(extractObservationInterpretation(resource)).toBeUndefined();
+      });
+    });
+
+    it('uses first interpretation when multiple are present', () => {
+      const resource: FHIRObservationResource = {
+        resourceType: 'Observation',
+        id: 'test-id',
+        category: [],
+        code: { coding: [], text: '' },
+        effectiveDateTime: '2024-01-01',
+        issued: '2024-01-01',
+        referenceRange: [],
+        interpretation: [
+          {
+            coding: [{ code: 'L', display: 'Low' }],
+          },
+          {
+            coding: [{ code: 'H', display: 'High' }],
+          },
+        ],
+      };
+
+      expect(extractObservationInterpretation(resource)).toBe('LOW');
+    });
+
+    it('handles ObsRecord type input', () => {
+      const obsRecord: ObsRecord = {
+        resourceType: 'Observation',
+        id: 'test-id',
+        category: [],
+        code: { coding: [], text: '' },
+        effectiveDateTime: '2024-01-01',
+        issued: '2024-01-01',
+        encounter: {
+          reference: 'Encounter/test-encounter',
+          type: 'Encounter',
+        },
+        referenceRange: [],
+        // Add interpretation array for extraction function (ObsRecord has [_: string]: any)
+        interpretation: [
+          {
+            coding: [{ code: 'H', display: 'High' }],
+          },
+        ] as any,
+        conceptClass: 'test-uuid',
+        value: '25',
+        name: 'Test',
+      };
+
+      expect(extractObservationInterpretation(obsRecord)).toBe('HIGH');
+    });
+
+    it('handles missing coding array', () => {
+      const resource: FHIRObservationResource = {
+        resourceType: 'Observation',
+        id: 'test-id',
+        category: [],
+        code: { coding: [], text: '' },
+        effectiveDateTime: '2024-01-01',
+        issued: '2024-01-01',
+        referenceRange: [],
+        interpretation: [
+          {
+            coding: [],
+            text: 'Normal',
+          },
+        ],
+      };
+
+      expect(extractObservationInterpretation(resource)).toBe('NORMAL');
+    });
+  });
+});