npm - @openhealth/oht-custom-parser-lib - Versions diffs - 0.5.7 → 0.5.9 - Mend

@openhealth/oht-custom-parser-lib 0.5.7 → 0.5.9

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (11) hide show

package/dist/service/ohtAgnosticMeasurementsExtractor.service.d.ts +59 -0
package/dist/service/ohtAgnosticMeasurementsExtractor.service.js +603 -0
package/dist/service/ohtAgnosticMeasurementsExtractor.service.js.map +1 -0
package/dist/service/ohtMeasurementsExtractor.service.js +2 -1
package/dist/service/ohtMeasurementsExtractor.service.js.map +1 -1
package/dist/util-ts/dataUtils.js +2 -9
package/dist/util-ts/dataUtils.js.map +1 -1
package/dist/util-ts/extractionUtils.js +2 -1
package/dist/util-ts/extractionUtils.js.map +1 -1
package/package.json +36 -36
package/readme.md +115 -115

package/dist/service/ohtAgnosticMeasurementsExtractor.service.js.map ADDED Viewed

@@ -0,0 +1 @@

+ 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package/dist/service/ohtMeasurementsExtractor.service.js CHANGED Viewed

@@ -296,9 +296,10 @@ function checkValueForPlausibleValues(labToOhtMapper, ohtBiomarker, unit, value,
     const isPlausibleValue = value >= plausibleLowerValue && value <= plausibleUpperValue;
     // Log if the value is not plausible
     if (!isPlausibleValue) {
-        processingLogger_service_1.processingLogger.addWarning(`Value "${value} ${standardUnit}" not plausible "${plausibleLowerValue} to ${plausibleUpperValue}" for "${labToOhtMapper.ohtBmId}" | "${labToOhtMapper.labKey}"`, 'plausibility_check', {
+        processingLogger_service_1.processingLogger.addWarning(`Value "${value} ${unit}" not plausible "${plausibleLowerValue} to ${plausibleUpperValue}" for "${labToOhtMapper.ohtBmId}" | "${labToOhtMapper.labKey}"`, 'plausibility_check', {
             labToOhtMapper,
             value,
+            unit,
             standardUnit,
             plausibleLowerValue,
             plausibleUpperValue,

package/dist/service/ohtMeasurementsExtractor.service.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/util-ts/dataUtils.js CHANGED Viewed

@@ -191,16 +191,9 @@ function processAppendedMappings(exams, labKeys, filename, annotationConfig) {
             processingLogger_service_1.processingLogger.logInfo(`Direct labKey not found, trying complex search for: ${additionalLabKey.labKey}`);
             // Second try: labKey search for "labKeyFirstHalf:labKeySecondHalf" format
             examData = findExamByLabKey(exams, additionalLabKey.labKey);
-            if (!examData) {
-                processingLogger_service_1.processingLogger.addWarning(`Additional labKey ${additionalLabKey.labKey} not found for appended mapping`, 'process_append_mappings', {
-                    labKey: additionalLabKey.labKey,
-                    filename: filenameForLogging,
-                });
+            if (!examData)
                 continue;
-            }
-            else {
-                processingLogger_service_1.processingLogger.logInfo(`Found exam by complex search for: ${additionalLabKey.labKey}`);
-            }
+            processingLogger_service_1.processingLogger.logInfo(`Found exam by complex search for: ${additionalLabKey.labKey}`);
         }
         const parts = [];
         // Process each extraction path

package/dist/util-ts/dataUtils.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/util-ts/extractionUtils.js CHANGED Viewed

@@ -656,10 +656,11 @@ function ohtReportCheckValueForPlausibleValues(ohtBmId, labKey, ohtBiomarker, un
     const isPlausibleValue = value >= plausibleLowerValue && value <= plausibleUpperValue;
     // Log if the value is not plausible
     if (!isPlausibleValue) {
-        processingLogger_service_1.processingLogger.addWarning(`Value "${value} ${standardUnit}" not plausible "${plausibleLowerValue} to ${plausibleUpperValue}" for "${ohtBmId}" | "${labKey}"`, 'plausibility_check', {
+        processingLogger_service_1.processingLogger.addWarning(`Value "${value} ${unit}" not plausible "${plausibleLowerValue} to ${plausibleUpperValue}" for "${ohtBmId}" | "${labKey}"`, 'plausibility_check', {
             ohtBmId,
             labKey,
             value,
+            unit,
             standardUnit,
             plausibleLowerValue,
             plausibleUpperValue,

package/dist/util-ts/extractionUtils.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/package.json CHANGED Viewed

@@ -1,36 +1,36 @@
-{
-  "name": "@openhealth/oht-custom-parser-lib",
-  "version": "0.5.7",
-  "description": "Shared nodejs lib with with reusable functions",
-  "main": "dist/index.js",
-  "types": "dist/index.d.ts",
-  "files": [
-    "/dist"
-  ],
-  "scripts": {
-    "test": "jest"
-  },
-  "keywords": [],
-  "author": "",
-  "license": "ISC",
-  "dependencies": {
-    "@google-cloud/pubsub": "^4.10.0",
-    "@google-cloud/storage": "^7.7.0",
-    "axios": "^1.13.2",
-    "bottleneck": "^2.19.5",
-    "dayjs": "^1.11.13",
-    "dotenv": "^16.4.5",
-    "jsonata": "^2.1.0",
-    "moment": "^2.30.1",
-    "mongodb": "^6.3.0",
-    "pino": "^8.19.0",
-    "pino-pretty": "^11.3.0"
-  },
-  "devDependencies": {
-    "@types/jest": "^29.5.14",
-    "axios-mock-adapter": "^2.1.0",
-    "jest": "^29.7.0",
-    "ts-jest": "^29.2.5",
-    "typescript": "^5.0.0"
-  }
-}
+{
+  "name": "@openhealth/oht-custom-parser-lib",
+  "version": "0.5.9",
+  "description": "Shared nodejs lib with with reusable functions",
+  "main": "dist/index.js",
+  "types": "dist/index.d.ts",
+  "files": [
+    "/dist"
+  ],
+  "scripts": {
+    "test": "jest"
+  },
+  "keywords": [],
+  "author": "",
+  "license": "ISC",
+  "dependencies": {
+    "@google-cloud/pubsub": "^4.10.0",
+    "@google-cloud/storage": "^7.7.0",
+    "axios": "^1.13.2",
+    "bottleneck": "^2.19.5",
+    "dayjs": "^1.11.13",
+    "dotenv": "^16.4.5",
+    "jsonata": "^2.1.0",
+    "moment": "^2.30.1",
+    "mongodb": "^6.3.0",
+    "pino": "^8.19.0",
+    "pino-pretty": "^11.3.0"
+  },
+  "devDependencies": {
+    "@types/jest": "^29.5.14",
+    "axios-mock-adapter": "^2.1.0",
+    "jest": "^29.7.0",
+    "ts-jest": "^29.2.5",
+    "typescript": "^5.0.0"
+  }
+}