@openhealth/oht-custom-parser-lib 0.5.58 → 0.5.61
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/index.d.ts +1 -0
- package/dist/index.js +4 -1
- package/dist/index.js.map +1 -1
- package/dist/service/auxiliaryFunctions.service.d.ts +1 -1
- package/dist/service/auxiliaryFunctions.service.js +6 -3
- package/dist/service/auxiliaryFunctions.service.js.map +1 -1
- package/dist/service/ohtReportMeasurementsExtractor.service.d.ts +2 -1
- package/dist/service/ohtReportMeasurementsExtractor.service.js +5 -4
- package/dist/service/ohtReportMeasurementsExtractor.service.js.map +1 -1
- package/dist/service/parsingErrorService.service.js +2 -1
- package/dist/service/parsingErrorService.service.js.map +1 -1
- package/dist/service/processingLogger.service.d.ts +2 -0
- package/dist/service/processingLogger.service.js +2 -0
- package/dist/service/processingLogger.service.js.map +1 -1
- package/dist/service/reportCreator.service.d.ts +1 -1
- package/dist/service/reportCreator.service.js +2 -2
- package/dist/service/reportCreator.service.js.map +1 -1
- package/dist/types/oht.types.d.ts +1 -0
- package/dist/types/oht.types.js.map +1 -1
- package/dist/util-ts/dataUtils.d.ts +5 -5
- package/dist/util-ts/dataUtils.js +38 -17
- package/dist/util-ts/dataUtils.js.map +1 -1
- package/dist/util-ts/mapperUtils.d.ts +8 -7
- package/dist/util-ts/mapperUtils.js +11 -8
- package/dist/util-ts/mapperUtils.js.map +1 -1
- package/dist/util-ts/siloPaths.d.ts +13 -0
- package/dist/util-ts/siloPaths.js +24 -0
- package/dist/util-ts/siloPaths.js.map +1 -0
- package/package.json +40 -40
- package/readme.md +115 -115
package/dist/index.d.ts
CHANGED
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@@ -12,6 +12,7 @@ export { handleError, ValidationError, JSON_VALIDATION_ERROR_NAME, shouldSendSla
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export type { TransformationRule, TransformationContext, ApplyRulesResult as TransformationApplyRulesResult, ApplyRulesOptions as TransformationApplyRulesOptions, ValidationResult as TransformationValidationResult, } from './types/transformationRules.types';
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export { processingLogger, ProcessingContext, StageDuration, getRequestIdFromContext, getCurrentRequestId, getRequestScopedFilename, runWithContext, runWithContextAsync, } from './service/processingLogger.service';
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export { parsingErrorService, initParsingErrorRequestState, clearParsingErrorRequestState, } from './service/parsingErrorService.service';
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export { normalizePartnerMappingKey, partnerSiloPath } from './util-ts/siloPaths';
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export { makeApiCallWithRetry, parseErrorObj } from './util-ts/apiUtils';
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export { extractValue, isBiomarkerValueNumerical, isBiomarkerExternalNoVisualRange, processAppendedMappings, fetchSynonymUnits, resolveUnitFromSynonyms, extractFromPath, applyFormat } from './util-ts/dataUtils';
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export { readFileFromBucket, uploadFileBufferToGCS } from './util-ts/googleStorageUtils';
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package/dist/index.js
CHANGED
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@@ -4,7 +4,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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};
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.ValidationError = exports.handleError = exports.PARSING_ERROR_CATALOG = exports.ParsingErrorType = exports.getRejectReason = exports.getErrorMessage = exports.ERROR_MESSAGES = exports.ERROR_CATALOG = exports.ErrorCode = exports.RejectReason = exports.UploadType = exports.Sex = exports.DataImportFileUploadStatus = exports.BiomarkerValueType = exports.MeasurementValueComparator = exports.DigitizationStatus = exports.PipelineStep = exports.ReferenceRangeType = exports.BiomarkerCompatibility = exports.ManualCheck = exports.AcfBiomarkerGenericDisclaimerLogic = exports.AcfBiomarkerRangeAnnotationCheck = exports.unitSynonyms = exports.validateTransformationRuleExpression = exports.applyTransformationRules = exports.generateBIMessages = exports.publishToTopic = exports.aggregateBiMessages = exports.aggregateMessages = exports.sendMessageToSlack = exports.getSlackFileIssueNotificationMessage = exports.extractValueFromGreaterLowerThan = exports.extractUnit = exports.getRangeFromPositionAndRegex = exports.parseExamValue = exports.extractReferenceAnnotation = exports.extractReferenceRanges = exports.checkValueForPlausibleValues = exports.ohtMeasurementsExtractor = exports.ohtReportMeasurementsExtractor = exports.getPartnerTransformationRules = exports.postFileUploadSetStatus = exports.queryFileUploadsWithFilters = exports.handleRejection = exports.getPatientAge = exports.isPatientAgeValid = exports.parseGender = exports.parseExternalPatientId = exports.postReportPreviewToCore = exports.postDataImportFileUploadToCore = void 0;
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-
exports.mapToOhtReport = exports.fetchActiveMappingRules = exports.lisXmlToJson = exports.lisCsvToExamRows = exports.parseRange = exports.getMappedBiomarkersLatest = exports.getMappedBiomarkers = exports.getLowerThanPatterns = exports.getGreaterThanPatterns = exports.pinoLogger = exports.uploadFileBufferToGCS = exports.readFileFromBucket = exports.applyFormat = exports.extractFromPath = exports.resolveUnitFromSynonyms = exports.fetchSynonymUnits = exports.processAppendedMappings = exports.isBiomarkerExternalNoVisualRange = exports.isBiomarkerValueNumerical = exports.extractValue = exports.parseErrorObj = exports.makeApiCallWithRetry = exports.clearParsingErrorRequestState = exports.initParsingErrorRequestState = exports.parsingErrorService = exports.runWithContextAsync = exports.runWithContext = exports.getRequestScopedFilename = exports.getCurrentRequestId = exports.getRequestIdFromContext = exports.processingLogger = exports.mapErrorToRejectReason = exports.extractFormattedRejectReason = exports.shouldSendSlackNotification = exports.JSON_VALIDATION_ERROR_NAME = void 0;
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exports.mapToOhtReport = exports.fetchActiveMappingRules = exports.lisXmlToJson = exports.lisCsvToExamRows = exports.parseRange = exports.getMappedBiomarkersLatest = exports.getMappedBiomarkers = exports.getLowerThanPatterns = exports.getGreaterThanPatterns = exports.pinoLogger = exports.uploadFileBufferToGCS = exports.readFileFromBucket = exports.applyFormat = exports.extractFromPath = exports.resolveUnitFromSynonyms = exports.fetchSynonymUnits = exports.processAppendedMappings = exports.isBiomarkerExternalNoVisualRange = exports.isBiomarkerValueNumerical = exports.extractValue = exports.parseErrorObj = exports.makeApiCallWithRetry = exports.partnerSiloPath = exports.normalizePartnerMappingKey = exports.clearParsingErrorRequestState = exports.initParsingErrorRequestState = exports.parsingErrorService = exports.runWithContextAsync = exports.runWithContext = exports.getRequestScopedFilename = exports.getCurrentRequestId = exports.getRequestIdFromContext = exports.processingLogger = exports.mapErrorToRejectReason = exports.extractFormattedRejectReason = exports.shouldSendSlackNotification = exports.JSON_VALIDATION_ERROR_NAME = void 0;
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// ### SERVICES ###
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var reportCreator_service_1 = require("./service/reportCreator.service");
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Object.defineProperty(exports, "postDataImportFileUploadToCore", { enumerable: true, get: function () { return reportCreator_service_1.postDataImportFileUploadToCore; } });
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@@ -85,6 +85,9 @@ Object.defineProperty(exports, "parsingErrorService", { enumerable: true, get: f
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Object.defineProperty(exports, "initParsingErrorRequestState", { enumerable: true, get: function () { return parsingErrorService_service_1.initParsingErrorRequestState; } });
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Object.defineProperty(exports, "clearParsingErrorRequestState", { enumerable: true, get: function () { return parsingErrorService_service_1.clearParsingErrorRequestState; } });
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// ### UTIL-TS ###
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var siloPaths_1 = require("./util-ts/siloPaths");
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Object.defineProperty(exports, "normalizePartnerMappingKey", { enumerable: true, get: function () { return siloPaths_1.normalizePartnerMappingKey; } });
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Object.defineProperty(exports, "partnerSiloPath", { enumerable: true, get: function () { return siloPaths_1.partnerSiloPath; } });
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var apiUtils_1 = require("./util-ts/apiUtils");
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Object.defineProperty(exports, "makeApiCallWithRetry", { enumerable: true, get: function () { return apiUtils_1.makeApiCallWithRetry; } });
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Object.defineProperty(exports, "parseErrorObj", { enumerable: true, get: function () { return apiUtils_1.parseErrorObj; } });
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package/dist/index.js.map
CHANGED
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@@ -1 +1 @@
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-
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../index.ts"],"names":[],"mappings":";;;;;;;AAAA,mBAAmB;AACnB,yEAGyC;AAFvC,uIAAA,8BAA8B,OAAA;AAC9B,gIAAA,uBAAuB,OAAA;AAEzB,mFAU8C;AAT5C,oIAAA,sBAAsB,OAAA;AACtB,yHAAA,WAAW,OAAA;AACX,+HAAA,iBAAiB,OAAA;AACjB,2HAAA,aAAa,OAAA;AACb,6HAAA,eAAe,OAAA;AACf,yIAAA,2BAA2B,OAAA;AAC3B,qIAAA,uBAAuB,OAAA;AAEvB,2IAAA,6BAA6B,OAAA;AAG/B,2GAE0D;AADxD,wJAAA,8BAA8B,OAAA;AAGhC,+FASoD;AARlD,4IAAA,wBAAwB,OAAA;AACxB,gJAAA,4BAA4B,OAAA;AAC5B,0IAAA,sBAAsB,OAAA;AACtB,8IAAA,0BAA0B,OAAA;AAC1B,kIAAA,cAAc,OAAA;AACd,gJAAA,4BAA4B,OAAA;AAC5B,+HAAA,WAAW,OAAA;AACX,oJAAA,gCAAgC,OAAA;AAGlC,yEAEyC;AADvC,6IAAA,oCAAoC,OAAA;AAAE,2HAAA,kBAAkB,OAAA;AAE1D,yEAKyC;AAJvC,0HAAA,iBAAiB,OAAA;AACjB,4HAAA,mBAAmB,OAAA;AACnB,uHAAA,cAAc,OAAA;AACd,2HAAA,kBAAkB,OAAA;AAEpB,qFAG+C;AAF7C,uIAAA,UAAU,OAA4B;AACtC,mJAAA,yBAAyB,OAAwC;AAGnE,gBAAgB;AAChB,mEAcqC;AALnC,mHAAA,YAAY,OAAA;AAMd,+CA+C2B;AA9CzB,6HAAA,gCAAgC,OAAA;AAChC,+HAAA,kCAAkC,OAAA;AAClC,wGAAA,WAAW,OAAA;AACX,mHAAA,sBAAsB,OAAA;AACtB,+GAAA,kBAAkB,OAAA;AAOlB,yGAAA,YAAY,OAAA;AACZ,+GAAA,kBAAkB,OAAA;AAClB,uHAAA,0BAA0B,OAAA;AAC1B,+GAAA,kBAAkB,OAAA;AAClB,uHAAA,0BAA0B,OAAA;AAC1B,gGAAA,GAAG,OAAA;AAgBH,uGAAA,UAAU,OAAA;AAEV,yGAAA,YAAY,OAAA;AAad,mDAa6B;AAX3B,wGAAA,SAAS,OAAA;AACT,4GAAA,aAAa,OAAA;AACb,6GAAA,cAAc,OAAA;AACd,8GAAA,eAAe,OAAA;AACf,8GAAA,eAAe,OAAA;AACf,+GAAA,gBAAgB,OAAA;AAEhB,oHAAA,qBAAqB,OAAA;AAKvB,2FAOkD;AANhD,6HAAA,WAAW,OAAA;AACX,iIAAA,eAAe,OAAA;AACf,4IAAA,0BAA0B,OAAA;AAC1B,6IAAA,2BAA2B,OAAA;AAC3B,8IAAA,4BAA4B,OAAA;AAC5B,wIAAA,sBAAsB,OAAA;AAUxB,4BAA4B;AAC5B,+EAS4C;AAR1C,4HAAA,gBAAgB,OAAA;AAGhB,mIAAA,uBAAuB,OAAA;AACvB,+HAAA,mBAAmB,OAAA;AACnB,oIAAA,wBAAwB,OAAA;AACxB,0HAAA,cAAc,OAAA;AACd,+HAAA,mBAAmB,OAAA;AAGrB,qFAI+C;AAH7C,kIAAA,mBAAmB,OAAA;AACnB,2IAAA,4BAA4B,OAAA;AAC5B,4IAAA,6BAA6B,OAAA;AAG/B,kBAAkB;AAClB,iDAAkF;AAAzE,uHAAA,0BAA0B,OAAA;AAAE,4GAAA,eAAe,OAAA;AACpD,+CAAuE;AAA/D,gHAAA,oBAAoB,OAAA;AAAE,yGAAA,aAAa,OAAA;AAC3C,iDAAiN;AAAzM,yGAAA,YAAY,OAAA;AAAE,sHAAA,yBAAyB,OAAA;AAAE,6HAAA,gCAAgC,OAAA;AAAE,oHAAA,uBAAuB,OAAA;AAAE,8GAAA,iBAAiB,OAAA;AAAE,oHAAA,uBAAuB,OAAA;AAAE,4GAAA,eAAe,OAAA;AAAE,wGAAA,WAAW,OAAA;AACpL,mEAAuF;AAA/E,wHAAA,kBAAkB,OAAA;AAAE,2HAAA,qBAAqB,OAAA;AACjD,mDAA2D;AAAnD,yHAAA,OAAO,OAAc;AAC7B,mDAAkF;AAA1E,oHAAA,sBAAsB,OAAA;AAAE,kHAAA,oBAAoB,OAAA;AACpD,iDAAmF;AAA3E,gHAAA,mBAAmB,OAAA;AAAE,sHAAA,yBAAyB,OAAA;AACtD,6DAAqD;AAA7C,6GAAA,UAAU,OAAA;AAClB,qDAI+B;AAH7B,+GAAA,gBAAgB,OAAA;AAChB,2GAAA,YAAY,OAAA;AACZ,sHAAA,uBAAuB,OAAA;AAIzB,4BAA4B;AAC5B,6EAAmE;AAA1D,yHAAA,cAAc,OAAA"}
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rejectReason?: string;
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isArchived?: boolean;
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}, fileUploadId: string, filename: string, ohtCoreApiKey: string): Promise<DataImportFileUpload>;
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declare function getPartnerTransformationRules(partnerId: string, labKeys: string[] | undefined, ohtCoreApiKey: string): Promise<TransformationRulesChains>;
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declare function getPartnerTransformationRules(partnerId: string, labKeys: string[] | undefined, ohtCoreApiKey: string, partnerMappingKey?: string): Promise<TransformationRulesChains>;
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export { parseExternalPatientId, parseGender, isPatientAgeValid, getPatientAge, handleRejection, queryFileUploadsWithFilters, postFileUploadSetStatus, getPartnerTransformationRules, };
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const processingLogger_service_1 = require("./processingLogger.service");
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const parsingErrorService_service_1 = require("./parsingErrorService.service");
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const error_types_1 = require("../types/error.types");
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const siloPaths_1 = require("../util-ts/siloPaths");
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const oht_types_1 = require("../types/oht.types");
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const dayjs_1 = __importDefault(require("dayjs"));
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const customParseFormat_1 = __importDefault(require("dayjs/plugin/customParseFormat"));
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// getPartnerTransformationRules fetches all the available partner transformation rules.
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// When labKeys is undefined, all chains for the partner are returned (no labKey filter applied),
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// which includes ohtReport.* chains used to build the OhtReport from raw JSON.
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async function getPartnerTransformationRules(partnerId, labKeys, ohtCoreApiKey) {
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async function getPartnerTransformationRules(partnerId, labKeys, ohtCoreApiKey, partnerMappingKey) {
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// Fetch every partner transformation rule
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const
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const rulesPath = (0, siloPaths_1.partnerSiloPath)(partnerId, partnerMappingKey, 'transformation-rules/');
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const ohtCoreTransformationRulesUrl = `${OHT_CORE_URL}${rulesPath}`;
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const rulesResponse = await (0, apiUtils_1.makeApiCallWithRetry)('GET', ohtCoreTransformationRulesUrl, null, ohtCoreApiKey);
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const rulesMap = (rulesResponse?.data?.items ?? [])
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.reduce((map, rule) => {
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});
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}, new Map());
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// Fetch the rule chains — when labKeys is provided, filter by them; otherwise fetch all chains
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const
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const chainsPath = (0, siloPaths_1.partnerSiloPath)(partnerId, partnerMappingKey, 'transformation-rules-chains/query');
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const ohtCoreTransformationRulesChainsUrl = `${OHT_CORE_URL}${chainsPath}`;
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const chainsBody = labKeys !== undefined
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? { filters: [{ field: 'labKey', multiSearch: labKeys }] }
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: {};
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{"version":3,"file":"auxiliaryFunctions.service.js","sourceRoot":"","sources":["../../service/auxiliaryFunctions.service.ts"],"names":[],"mappings":";;;;;
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+
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@@ -142,9 +142,10 @@ import { Measurement, PatientInfo, UnknownMeasurement, Exam, UnmappedLabKey, Par
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* @param partnerId - Partner ID for fetching biomarker mappings and synonym units
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* @param isReportPreview - isReportPreview Report Simulator
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* @param partnerCustomization - `panelCustomisation` and `reportCustomisation` coming from `partnerConfig`.
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+
* @param partnerMappingKey - Silo key resolved from the pipeline Pub/Sub message (defaults to `'default'`).
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* @returns Promise resolving to extraction result with measurements, unknownMeasurements, unknownUnits, unmappedLabKeys, and parsing status
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*/
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-
declare function ohtReportMeasurementsExtractor(isReportPreview: boolean, exams: Exam[], sourceFilename: string, patientInfo: PatientInfo, documentDate: Date | undefined, allowMultiMeasurementsPerBiomarker: boolean, ohtCoreApiKey: string, partnerId: string, partnerCustomization?: PartnerCustomization): Promise<{
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148
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+
declare function ohtReportMeasurementsExtractor(isReportPreview: boolean, exams: Exam[], sourceFilename: string, patientInfo: PatientInfo, documentDate: Date | undefined, allowMultiMeasurementsPerBiomarker: boolean, ohtCoreApiKey: string, partnerId: string, partnerCustomization?: PartnerCustomization, partnerMappingKey?: string): Promise<{
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measurements: Measurement[];
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unknownMeasurements: UnknownMeasurement[];
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unknownUnits: UnknownUnits[];
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@@ -232,9 +232,10 @@ function resolveUnknownMeasurementName(parts, fallback) {
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* @param partnerId - Partner ID for fetching biomarker mappings and synonym units
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* @param isReportPreview - isReportPreview Report Simulator
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* @param partnerCustomization - `panelCustomisation` and `reportCustomisation` coming from `partnerConfig`.
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+
* @param partnerMappingKey - Silo key resolved from the pipeline Pub/Sub message (defaults to `'default'`).
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* @returns Promise resolving to extraction result with measurements, unknownMeasurements, unknownUnits, unmappedLabKeys, and parsing status
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*/
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237
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-
async function ohtReportMeasurementsExtractor(isReportPreview, exams, sourceFilename, patientInfo, documentDate, allowMultiMeasurementsPerBiomarker, ohtCoreApiKey, partnerId, partnerCustomization) {
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238
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+
async function ohtReportMeasurementsExtractor(isReportPreview, exams, sourceFilename, patientInfo, documentDate, allowMultiMeasurementsPerBiomarker, ohtCoreApiKey, partnerId, partnerCustomization, partnerMappingKey) {
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filename = sourceFilename;
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const measurements = [];
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const unknownMeasurements = [];
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@@ -260,8 +261,8 @@ async function ohtReportMeasurementsExtractor(isReportPreview, exams, sourceFile
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processingLogger_service_1.processingLogger.logInfo(`Processing lab file with ${labKeys.length} keys, filename: ${(0, processingLogger_service_1.getRequestScopedFilename)(filename)}`);
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// Call getMappedBiomarkers to get the biomarker mapping for the partner and if reportPreview is true, get the latest version regardless of active status
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const mappedBiomarkers = isReportPreview
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-
? await (0, dataUtils_1.getMappedBiomarkersLatest)(partnerId, ohtCoreApiKey)
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-
: await (0, dataUtils_1.getMappedBiomarkers)(partnerId, ohtCoreApiKey);
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264
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+
? await (0, dataUtils_1.getMappedBiomarkersLatest)(partnerId, ohtCoreApiKey, partnerMappingKey)
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265
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+
: await (0, dataUtils_1.getMappedBiomarkers)(partnerId, ohtCoreApiKey, partnerMappingKey);
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// add "GROUPED_" bms for appended mappings
|
|
266
267
|
if (mappedBiomarkers) {
|
|
267
268
|
const groupedLabKeys = Object.keys(mappedBiomarkers).filter(labKey => labKey.startsWith('GROUPED_'));
|
|
@@ -326,7 +327,7 @@ async function ohtReportMeasurementsExtractor(isReportPreview, exams, sourceFile
|
|
|
326
327
|
// Fetch synonym units from API if enabled
|
|
327
328
|
let synonymUnits = null;
|
|
328
329
|
if (partnerId) {
|
|
329
|
-
synonymUnits = await (0, dataUtils_1.fetchSynonymUnits)(partnerId, ohtCoreApiKey);
|
|
330
|
+
synonymUnits = await (0, dataUtils_1.fetchSynonymUnits)(partnerId, ohtCoreApiKey, partnerMappingKey);
|
|
330
331
|
// If API fetch failed or returned empty, set to null to use hardcoded fallback
|
|
331
332
|
if (synonymUnits.length === 0) {
|
|
332
333
|
synonymUnits = null;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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1
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+
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@@ -209,6 +209,7 @@ class ParsingErrorService {
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|
209
209
|
}
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|
210
210
|
const loggerState = processingLogger_service_1.processingLogger.getState();
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|
211
211
|
const partnerId = loggerState.partnerId;
|
|
212
|
+
const partnerMappingKey = loggerState.partnerMappingKey;
|
|
212
213
|
const isPreview = loggerState.isPreview ?? false;
|
|
213
214
|
if (!partnerId || isPreview) {
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214
215
|
return;
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|
@@ -229,7 +230,7 @@ class ParsingErrorService {
|
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|
229
230
|
if (payloads.length === 0) {
|
|
230
231
|
return;
|
|
231
232
|
}
|
|
232
|
-
await (0, dataUtils_1.bulkUpsertCustomParserErrorProfiles)(partnerId, payloads, apiKey);
|
|
233
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+
await (0, dataUtils_1.bulkUpsertCustomParserErrorProfiles)(partnerId, payloads, apiKey, partnerMappingKey);
|
|
233
234
|
}
|
|
234
235
|
catch (error) {
|
|
235
236
|
processingLogger_service_1.processingLogger.logError('Failed to flush parsing error profiles to Core', error instanceof Error ? error : undefined, { partner_id: partnerId });
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|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"parsingErrorService.service.js","sourceRoot":"","sources":["../../service/parsingErrorService.service.ts"],"names":[],"mappings":";;;
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|
1
|
+
{"version":3,"file":"parsingErrorService.service.js","sourceRoot":"","sources":["../../service/parsingErrorService.service.ts"],"names":[],"mappings":";;;AAwUA,oEAIC;AAED,sEAEC;AAhVD;;;;;;;GAOG;AACH,sDAY8B;AAC9B,oDAA2E;AAC3E,yEAKoC;AAEpC,mEAA4D;AAC5D,mEAGiC;AAMjC,8EAA8E;AAC9E,MAAM,yBAAyB,GAAG,IAAI,GAAG,EAA6B,CAAC;AAEvE,SAAS,4BAA4B;IACnC,OAAO,EAAE,WAAW,EAAE,EAAE,EAAE,CAAC;AAC7B,CAAC;AAED,MAAM,aAAa,GAAyC;IAC1D,OAAO,EAAE,CAAC;IACV,KAAK,EAAE,CAAC;IACR,QAAQ,EAAE,CAAC;CACZ,CAAC;AAEF,SAAS,uBAAuB,CAC9B,CAAuB,EACvB,CAAuB;IAEvB,OAAO,aAAa,CAAC,CAAC,CAAC,IAAI,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;AACtD,CAAC;AAED,SAAS,eAAe;IACtB,MAAM,SAAS,GAAG,IAAA,8CAAmB,GAAE,CAAC;IACxC,IAAI,SAAS,IAAI,IAAI;QAAE,OAAO,IAAI,CAAC;IACnC,OAAO,yBAAyB,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,IAAI,CAAC;AAC1D,CAAC;AAED,6FAA6F;AAC7F,SAAS,sBAAsB,CAAC,UAA6B;IAC3D,MAAM,OAAO,GAAG,mCAAqB,CAAC,UAAU,CAAC,SAAS,CAAC,CAAC;IAC5D,IAAI,UAAU,CAAC,QAAQ,KAAK,UAAU,EAAE,CAAC;QACvC,MAAM,YAAY,GAAG,UAAU,CAAC,YAAY,IAAI,OAAO,CAAC,YAAY,CAAC;QACrE,2CAAgB,CAAC,QAAQ,CAAC,IAAI,KAAK,CAAC,UAAU,CAAC,OAAO,CAAC,EAAE,UAAU,CAAC,YAAY,EAAE;YAChF,YAAY;YACZ,SAAS,EAAE,UAAU,CAAC,SAAS;SAChC,CAAC,CAAC;QACH,OAAO;IACT,CAAC;IAED,MAAM,eAAe,GAAG,UAAU,CAAC,QAAQ,KAAK,OAAO,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,MAAM,CAAC;IAC9E,2CAAgB,CAAC,UAAU,CAAC,UAAU,CAAC,OAAO,EAAE,UAAU,CAAC,YAAY,EAAE;QACvE,WAAW,EAAE,OAAO,CAAC,WAAW,IAAI,eAAe;QACnD,eAAe,EAAE,OAAO,CAAC,eAAe,IAAI,SAAS;QACrD,eAAe;QACf,IAAI,EAAE,UAAU,CAAC,UAAU;QAC3B,WAAW,EAAE,UAAU,CAAC,SAAS;KAClC,CAAC,CAAC;AACL,CAAC;AAED,iFAAiF;AACjF,SAAS,0BAA0B,CACjC,WAAgC,EAChC,OAAiC;IAEjC,OAAO,WAAW;SACf,MAAM,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC,YAAY,CAAC,OAAO,CAAC,CAAC;SAC9C,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC;QACf,WAAW,EAAE,KAAK,CAAC,YAAY;QAC/B,OAAO,EAAE,KAAK,CAAC,OAAO;QACtB,IAAI,EAAE,KAAK,CAAC,IAAI;KACjB,CAAC,CAAC,CAAC;AACR,CAAC;AAED,MAAM,mBAAmB;IACvB,wEAAwE;IACxE,gBAAgB,CAAC,SAAiB;QAChC,yBAAyB,CAAC,GAAG,CAAC,SAAS,EAAE,4BAA4B,EAAE,CAAC,CAAC;IAC3E,CAAC;IAED,iBAAiB,CAAC,SAAiB;QACjC,yBAAyB,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;IAC9C,CAAC;IAED;;;OAGG;IACH,MAAM,CACJ,SAA2B,EAC3B,OAAmC,EACnC,OAAmC;QAEnC,MAAM,OAAO,GAAG,mCAAqB,CAAC,SAAS,CAAC,CAAC;QACjD,MAAM,QAAQ,GAAG,OAAO,EAAE,QAAQ,IAAI,OAAO,CAAC,QAAQ,CAAC;QACvD,MAAM,YAAY,GAAG,OAAO,EAAE,YAAY,IAAI,OAAO,CAAC,YAAY,CAAC;QACnE,MAAM,UAAU,GAAG,IAAA,2CAA6B,EAAC,OAAO,CAAC,UAAU,EAAE,OAAO,CAAC,CAAC;QAC9E,MAAM,OAAO,GAAG,IAAA,sCAAwB,EAAC,OAAO,CAAC,OAAO,EAAE,OAAO,CAAC,CAAC;QACnE,MAAM,YAAY,GAAG,OAAO,EAAE,YAAY,IAAI,OAAO,CAAC,YAAY,CAAC;QAEnE,MAAM,YAAY,GAAgB;YAChC,KAAK,EAAE,OAAO,EAAE,WAAW,IAAI,OAAO,EAAE,YAAY,EAAE,KAAK,IAAI,OAAO,CAAC,YAAY,CAAC,KAAK;YACzF,KAAK,EAAE,OAAO,EAAE,WAAW,IAAI,OAAO,EAAE,YAAY,EAAE,KAAK,IAAI,OAAO,CAAC,YAAY,CAAC,KAAK;YACzF,EAAE,EAAE,OAAO,EAAE,QAAQ,IAAI,OAAO,EAAE,YAAY,EAAE,EAAE,IAAI,OAAO,CAAC,YAAY,CAAC,EAAE;SAC9E,CAAC;QAEF,MAAM,UAAU,GAAsB;YACpC,SAAS;YACT,QAAQ;YACR,OAAO;YACP,aAAa,EAAE,OAAO,CAAC,aAAa;YACpC,YAAY;YACZ,UAAU;YACV,IAAI,EAAE,OAAO,EAAE,IAAI;YACnB,YAAY;YACZ,YAAY;YACZ,WAAW,EAAE,OAAO,EAAE,WAAW;YACjC,aAAa,EAAE,OAAO,EAAE,aAAa;YACrC,UAAU,EAAE,OAAO,EAAE,UAAU;YAC/B,OAAO,EAAE,OAAO,EAAE,OAAO;YACzB,YAAY,EAAE,OAAO,EAAE,YAAY;YACnC,SAAS,EAAE,IAAI,IAAI,EAAE;SACtB,CAAC;QAEF,MAAM,KAAK,GAAG,eAAe,EAAE,CAAC;QAChC,IAAI,KAAK,KAAK,IAAI,EAAE,CAAC;YACnB,2CAAgB,CAAC,QAAQ,CACvB,+EAA+E,EAC/E,SAAS,EACT,EAAE,SAAS,EAAE,CACd,CAAC;YACF,OAAO,UAAU,CAAC;QACpB,CAAC;QAED,KAAK,CAAC,WAAW,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC;QACnC,sBAAsB,CAAC,UAAU,CAAC,CAAC;QACnC,OAAO,UAAU,CAAC;IACpB,CAAC;IAED,cAAc;QACZ,OAAO,CAAC,GAAG,CAAC,eAAe,EAAE,EAAE,WAAW,IAAI,EAAE,CAAC,CAAC,CAAC;IACrD,CAAC;IAED,kDAAkD;IAElD,kBAAkB;QAChB,OAAO,IAAA,yCAAiB,EAAC,0BAA0B,CAAC,eAAe,EAAE,EAAE,WAAW,IAAI,EAAE,EAAE,OAAO,CAAC,EAAE,OAAO,CAAC,CAAC;IAC/G,CAAC;IAED,kBAAkB;QAChB,OAAO,IAAA,yCAAiB,EAAC,0BAA0B,CAAC,eAAe,EAAE,EAAE,WAAW,IAAI,EAAE,EAAE,OAAO,CAAC,EAAE,OAAO,CAAC,CAAC;IAC/G,CAAC;IAED,KAAK,CAAC,iBAAiB,CAAC,QAAgB,EAAE,WAAmB,EAAE,YAAoB;QACjF,MAAM,SAAS,GAAG,IAAI,CAAC,kBAAkB,EAAE,CAAC;QAC5C,IAAI,CAAC,SAAS,CAAC,IAAI,EAAE,EAAE,CAAC;YACtB,OAAO;QACT,CAAC;QAED,MAAM,OAAO,GAAG,GAAG,QAAQ,6BAA6B,YAAY,EAAE,CAAC;QACvE,MAAM,QAAQ,GAAG,IAAA,4DAAoC,EACnD,SAAS,EACT,mBAAmB,WAAW,GAAG,EACjC,OAAO,CACR,CAAC;QACF,MAAM,YAAY,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;QACxC,IAAI,YAAY,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,EAAE,CAAC;YACrC,MAAM,IAAA,0CAAkB,EAAC,QAAQ,CAAC,CAAC;QACrC,CAAC;IACH,CAAC;IAED,kEAAkE;IAElE;;;OAGG;IACH,iBAAiB,CAAC,GAAsB;QACtC,MAAM,WAAW,GAAG,eAAe,EAAE,EAAE,WAAW,IAAI,EAAE,CAAC;QACzD,IAAI,WAAW,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC7B,OAAO,EAAE,CAAC;QACZ,CAAC;QAED,MAAM,MAAM,GAAG,IAAI,GAAG,EAA+B,CAAC;QACtD,KAAK,MAAM,KAAK,IAAI,WAAW,EAAE,CAAC;YAChC,MAAM,GAAG,GAAG,GAAG,KAAK,CAAC,SAAS,KAAK,KAAK,CAAC,UAAU,EAAE,CAAC;YACtD,MAAM,KAAK,GAAG,MAAM,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;YAC9B,IAAI,KAAK,EAAE,CAAC;gBACV,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;YACpB,CAAC;iBAAM,CAAC;gBACN,MAAM,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC;YAC3B,CAAC;QACH,CAAC;QAED,MAAM,YAAY,GAAG,GAAG,CAAC,YAAY,IAAI,0BAA0B,CAAC;QACpE,MAAM,QAAQ,GAA0B,EAAE,CAAC;QAE3C,KAAK,MAAM,KAAK,IAAI,MAAM,CAAC,MAAM,EAAE,EAAE,CAAC;YACpC,MAAM,cAAc,GAAG,KAAK,CAAC,KAAK,CA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@@ -24,6 +24,7 @@ export interface ProcessingContext {
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24
24
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fileUploadId?: string;
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25
25
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partnerId?: string;
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26
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partnerName?: string;
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+
partnerMappingKey?: string;
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signedUploadId?: string;
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28
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uploadedByUserId?: string;
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cloudEventId?: string;
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@@ -66,6 +67,7 @@ interface ProcessingState {
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fileUploadId?: string;
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partnerId?: string;
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68
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partnerName?: string;
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70
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+
partnerMappingKey?: string;
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69
71
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signedUploadId?: string;
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70
72
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uploadedByUserId?: string;
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71
73
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cloudEventId?: string;
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@@ -95,6 +95,7 @@ function buildInitialStateFromContext(context) {
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95
95
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fileUploadId: context.fileUploadId ?? undefined,
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partnerId: context.partnerId ?? undefined,
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partnerName: context.partnerName ?? undefined,
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98
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+
partnerMappingKey: context.partnerMappingKey ?? undefined,
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98
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signedUploadId: context.signedUploadId ?? undefined,
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99
100
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uploadedByUserId: context.uploadedByUserId ?? undefined,
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100
101
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cloudEventId: context.cloudEventId ?? undefined,
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@@ -241,6 +242,7 @@ class ProcessingLoggerService {
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state.fileUploadId = context.fileUploadId ?? undefined;
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state.partnerId = context.partnerId ?? undefined;
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state.partnerName = context.partnerName ?? undefined;
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245
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+
state.partnerMappingKey = context.partnerMappingKey ?? undefined;
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244
246
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state.signedUploadId = context.signedUploadId ?? undefined;
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245
247
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state.cloudEventId = context.cloudEventId ?? undefined;
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246
248
|
state.messageId = context.messageId ?? undefined;
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@@ -1 +1 @@
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1
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-
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1
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+
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@@ -5,5 +5,5 @@ import { UnknownUnits } from '../types/custom-parser.types';
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5
5
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* Uses the shared makeApiCallWithRetry helper (Basic auth) from oht-custom-parser-lib.
|
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6
6
|
*/
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7
7
|
declare function postReportPreviewToCore(reportPreviewId: string, measurements: Measurement[], unknownMeasurements: UnknownMeasurement[], filename: string, unknownUnits: UnknownUnits[], partnerId: string, isReportParsedCorrectly: boolean, notes: string, ohtCoreApiKey: string): Promise<void>;
|
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8
|
-
declare function postDataImportFileUploadToCore(dataImportFileUpload: DataImportFileUpload, unknownMeasurements: UnknownMeasurementsBulk, unknownUnits: UnknownUnits[], rejectedStatus: string | undefined, rejectReason: string | undefined, isReportParsedCorrectly: boolean, filename: string, ohtCoreApiKey: string): Promise<DataImportFileUpload | null>;
|
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8
|
+
declare function postDataImportFileUploadToCore(dataImportFileUpload: DataImportFileUpload, unknownMeasurements: UnknownMeasurementsBulk, unknownUnits: UnknownUnits[], rejectedStatus: string | undefined, rejectReason: string | undefined, isReportParsedCorrectly: boolean, filename: string, ohtCoreApiKey: string, partnerMappingKey?: string): Promise<DataImportFileUpload | null>;
|
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9
9
|
export { postDataImportFileUploadToCore, postReportPreviewToCore };
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@@ -79,7 +79,7 @@ async function postReportPreviewToCore(reportPreviewId, measurements, unknownMea
|
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|
79
79
|
throw apiError;
|
|
80
80
|
}
|
|
81
81
|
}
|
|
82
|
-
async function postDataImportFileUploadToCore(dataImportFileUpload, unknownMeasurements, unknownUnits, rejectedStatus, rejectReason, isReportParsedCorrectly, filename, ohtCoreApiKey) {
|
|
82
|
+
async function postDataImportFileUploadToCore(dataImportFileUpload, unknownMeasurements, unknownUnits, rejectedStatus, rejectReason, isReportParsedCorrectly, filename, ohtCoreApiKey, partnerMappingKey) {
|
|
83
83
|
let status = isReportParsedCorrectly
|
|
84
84
|
? oht_types_1.DataImportFileUploadStatus.PROCESSED
|
|
85
85
|
: oht_types_1.DataImportFileUploadStatus.FOR_REVIEW;
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@@ -114,7 +114,7 @@ async function postDataImportFileUploadToCore(dataImportFileUpload, unknownMeasu
|
|
|
114
114
|
// Send unknown measurements if they exist (before ingestion)
|
|
115
115
|
if (unknownMeasurements.unmappedlabkeys.length > 0) {
|
|
116
116
|
try {
|
|
117
|
-
await (0, dataUtils_1.updatePartnerCustomParserUnmappedLabKeys)(dataImportFileUpload.partnerId, unknownMeasurements, ohtCoreApiKey);
|
|
117
|
+
await (0, dataUtils_1.updatePartnerCustomParserUnmappedLabKeys)(dataImportFileUpload.partnerId, unknownMeasurements, ohtCoreApiKey, partnerMappingKey);
|
|
118
118
|
processingLogger_service_1.processingLogger.logInfo(`Successfully sent unknown measurements to server, filename: ${filename}`, {
|
|
119
119
|
partner_id: dataImportFileUpload.partnerId,
|
|
120
120
|
unknown_measurements_count: unknownMeasurements.unmappedlabkeys.length,
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|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"reportCreator.service.js","sourceRoot":"","sources":["../../service/reportCreator.service.ts"],"names":[],"mappings":";;;;;
|
|
1
|
+
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1
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