@openhealth/oht-custom-parser-lib 0.5.51 → 0.5.52
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/index.d.ts +2 -3
- package/dist/index.js +2 -9
- package/dist/index.js.map +1 -1
- package/dist/service/auxiliaryFunctions.service.d.ts +8 -1
- package/dist/service/auxiliaryFunctions.service.js +11 -40
- package/dist/service/auxiliaryFunctions.service.js.map +1 -1
- package/dist/service/ohtReportMeasurementsExtractor.service.d.ts +4 -2
- package/dist/service/ohtReportMeasurementsExtractor.service.js +63 -49
- package/dist/service/ohtReportMeasurementsExtractor.service.js.map +1 -1
- package/dist/service/processingLogger.service.d.ts +0 -5
- package/dist/service/processingLogger.service.js +1 -52
- package/dist/service/processingLogger.service.js.map +1 -1
- package/dist/service/reportCreator.service.js +55 -5
- package/dist/service/reportCreator.service.js.map +1 -1
- package/dist/types/error.types.d.ts +0 -104
- package/dist/types/error.types.js +1 -240
- package/dist/types/error.types.js.map +1 -1
- package/dist/util-ts/dataUtils.d.ts +0 -1
- package/dist/util-ts/dataUtils.js +1 -15
- package/dist/util-ts/dataUtils.js.map +1 -1
- package/dist/util-ts/mapperUtils.d.ts +1 -2
- package/dist/util-ts/mapperUtils.js +3 -12
- package/dist/util-ts/mapperUtils.js.map +1 -1
- package/package.json +40 -40
- package/readme.md +115 -115
- package/dist/service/ohtAgnosticMeasurementsExtractor.service.d.ts +0 -59
- package/dist/service/ohtAgnosticMeasurementsExtractor.service.js +0 -603
- package/dist/service/ohtAgnosticMeasurementsExtractor.service.js.map +0 -1
- package/dist/service/parsingErrorService.service.d.ts +0 -40
- package/dist/service/parsingErrorService.service.js +0 -251
- package/dist/service/parsingErrorService.service.js.map +0 -1
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.processingLogger = void 0;
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exports.getRequestIdFromContext = getRequestIdFromContext;
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exports.getCurrentRequestId = getCurrentRequestId;
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exports.getRequestScopedFilename = getRequestScopedFilename;
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exports.runWithContext = runWithContext;
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exports.runWithContextAsync = runWithContextAsync;
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context.cloudEventId ??
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}
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/** Returns the current request id from AsyncLocalStorage (set by runWithContextAsync). */
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}
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* Returns the request-scoped filename for use in log messages.
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* Uses processingLogger state (from registry via AsyncLocalStorage) to ensure the filename
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partnerName: context.partnerName ?? undefined,
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cloudEventId: context.cloudEventId ?? undefined,
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publishTime: context.publishTime ?? undefined,
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* Run handler logic inside a request-scoped context. State is keyed by request id in the registry;
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* ALS holds only the id. Call at the start of each Cloud Event / request after building the context.
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* @deprecated Prefer runWithContextAsync for async handlers.
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function runWithContext(context, fn) {
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const requestId = getRequestIdFromContext(context);
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const initialState = buildInitialStateFromContext(context);
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processingStateRegistry.set(requestId, initialState);
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const { initParsingErrorRequestState, clearParsingErrorRequestState, parsingErrorService } = await Promise.resolve().then(() => __importStar(require('./parsingErrorService.service')));
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}
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}
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return await requestIdStorage.run(requestId, () => fn());
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}
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finally {
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processingStateRegistry.delete(requestId);
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}
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}
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1
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+
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@@ -10,6 +10,7 @@ const processingLogger_service_1 = require("./processingLogger.service");
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10
10
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const dotenv_1 = __importDefault(require("dotenv"));
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11
11
|
const dataUtils_1 = require("../util-ts/dataUtils");
|
|
12
12
|
const apiUtils_1 = require("../util-ts/apiUtils");
|
|
13
|
+
const errorHandling_service_1 = require("./errorHandling.service");
|
|
13
14
|
dotenv_1.default.config({ path: `.env.local` });
|
|
14
15
|
const OHT_CORE_URL = process.env.OHT_CORE_URL;
|
|
15
16
|
/**
|
|
@@ -94,6 +95,15 @@ async function postDataImportFileUploadToCore(dataImportFileUpload, unknownMeasu
|
|
|
94
95
|
throw new Error(`No ownerUserId found for fileUploadId: ${dataImportFileUpload.id}`);
|
|
95
96
|
}
|
|
96
97
|
const ownerUserId = userBindingResponse.data.ownerUserId;
|
|
98
|
+
const loggedInUserId = dataImportFileUpload.uploadedByUserId?.trim() ||
|
|
99
|
+
userBindingResponse.data.grantedUserId?.trim();
|
|
100
|
+
if (!loggedInUserId) {
|
|
101
|
+
processingLogger_service_1.processingLogger.logError(`ERROR: No logged-in user id found for fileUploadId: ${dataImportFileUpload.id}, filename: ${filename}`, undefined, {
|
|
102
|
+
response: userBindingResponse?.data,
|
|
103
|
+
uploadedByUserId: dataImportFileUpload.uploadedByUserId,
|
|
104
|
+
});
|
|
105
|
+
throw new Error(`No logged-in user id found for fileUploadId: ${dataImportFileUpload.id}`);
|
|
106
|
+
}
|
|
97
107
|
// Update the user with patient information
|
|
98
108
|
const userPayload = {
|
|
99
109
|
firstName: dataImportFileUpload?.patientInfo?.firstName ?? '',
|
|
@@ -146,8 +156,9 @@ async function postDataImportFileUploadToCore(dataImportFileUpload, unknownMeasu
|
|
|
146
156
|
// - Handle LabOrderID version deprecation (if labOrderId is present)
|
|
147
157
|
// - Set status to READY
|
|
148
158
|
// - Trigger all notifications and webhooks
|
|
149
|
-
//
|
|
150
|
-
|
|
159
|
+
// OHT Core `fileuploadspubsub.IngestionMessage` (see oht-core pkg/fileuploads/pubsub/message.go).
|
|
160
|
+
// Minimal `userToken`: userId/id = logged-in uploader (→ LoggedUserID), not owner; partnerId → TenantID.
|
|
161
|
+
const ingestionBody = {
|
|
151
162
|
...dataImportFileUpload,
|
|
152
163
|
status: patchStatus,
|
|
153
164
|
rejectReason,
|
|
@@ -155,10 +166,49 @@ async function postDataImportFileUploadToCore(dataImportFileUpload, unknownMeasu
|
|
|
155
166
|
...dataImportFileUpload.digitalization,
|
|
156
167
|
pipelineStep: oht_types_1.PipelineStep.SENDING_RESULTS,
|
|
157
168
|
},
|
|
158
|
-
}
|
|
159
|
-
|
|
169
|
+
};
|
|
170
|
+
const ingestionMessage = {
|
|
171
|
+
schemaVersion: 1,
|
|
172
|
+
dataImportFileUploadId: dataImportFileUpload.id,
|
|
173
|
+
body: ingestionBody,
|
|
174
|
+
userToken: {
|
|
175
|
+
id: loggedInUserId,
|
|
176
|
+
userId: loggedInUserId,
|
|
177
|
+
partnerId: dataImportFileUpload.partnerId,
|
|
178
|
+
},
|
|
179
|
+
};
|
|
180
|
+
// const ingestionResponse = await makeApiCallWithRetry(
|
|
181
|
+
// 'patch',
|
|
182
|
+
// ohtCoreIngestionUrl,
|
|
183
|
+
// ingestionBody,
|
|
184
|
+
// ohtCoreApiKey
|
|
185
|
+
// );
|
|
186
|
+
// processingLogger.logInfo(
|
|
187
|
+
// `Resp: PATCH ingestion status: ${patchStatus} ${ohtCoreIngestionUrl}, filename: ${filename}`,
|
|
188
|
+
// { response: ingestionResponse.data }
|
|
189
|
+
// );
|
|
190
|
+
const pubsubIngestionTopic = process.env.PUBSUB_FILE_UPLOADS_INGESTION_TOPIC ?? '';
|
|
191
|
+
const pubsubProjectId = process.env.PUBSUB_FILE_UPLOADS_INGESTION_PROJECT_ID ?? '';
|
|
192
|
+
if (pubsubIngestionTopic && pubsubProjectId) {
|
|
193
|
+
if (!dataImportFileUpload.id?.trim()) {
|
|
194
|
+
processingLogger_service_1.processingLogger.logError(`Pub/Sub: skipping file-uploads ingestion publish — missing dataImportFileUpload.id, filename: ${filename}`, undefined, { topic: pubsubIngestionTopic });
|
|
195
|
+
}
|
|
196
|
+
else {
|
|
197
|
+
try {
|
|
198
|
+
await (0, errorHandling_service_1.publishToTopic)(pubsubIngestionTopic, Buffer.from(JSON.stringify(ingestionMessage), 'utf8'), pubsubProjectId);
|
|
199
|
+
processingLogger_service_1.processingLogger.logInfo(`Pub/Sub: published file-uploads ingestion message, topic: ${pubsubIngestionTopic}, filename: ${filename}`, { file_upload_id: dataImportFileUpload.id });
|
|
200
|
+
}
|
|
201
|
+
catch (pubsubError) {
|
|
202
|
+
processingLogger_service_1.processingLogger.logError(`Pub/Sub: failed to publish file-uploads ingestion message, filename: ${filename}`, pubsubError instanceof Error ? pubsubError : undefined, {
|
|
203
|
+
file_upload_id: dataImportFileUpload.id,
|
|
204
|
+
topic: pubsubIngestionTopic,
|
|
205
|
+
error_details: (0, apiUtils_1.parseErrorObj)(pubsubError),
|
|
206
|
+
});
|
|
207
|
+
}
|
|
208
|
+
}
|
|
209
|
+
}
|
|
160
210
|
// Return null since ingestion is asynchronous and we don't have the updated file upload object
|
|
161
|
-
// The caller should not rely on the returned value for status checking
|
|
211
|
+
// The caller should not rely on the returned value for status checking
|
|
162
212
|
return null;
|
|
163
213
|
}
|
|
164
214
|
catch (error) {
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"reportCreator.service.js","sourceRoot":"","sources":["../../service/reportCreator.service.ts"],"names":[],"mappings":";;;;;
|
|
1
|
+
{"version":3,"file":"reportCreator.service.js","sourceRoot":"","sources":["../../service/reportCreator.service.ts"],"names":[],"mappings":";;;;;AAwXS,wEAA8B;AAAE,0DAAuB;AAxXhE,kDAQ4B;AAE5B,yEAA8D;AAE9D,oDAA4B;AAC5B,oDAAoH;AACpH,kDAA0E;AAC1E,mEAAyD;AACzD,gBAAM,CAAC,MAAM,CAAC,EAAE,IAAI,EAAE,YAAY,EAAE,CAAC,CAAC;AAEtC,MAAM,YAAY,GAAG,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC;AAE9C;;;GAGG;AACH,KAAK,UAAU,uBAAuB,CACpC,eAAuB,EACvB,YAA2B,EAC3B,mBAAyC,EACzC,QAAgB,EAChB,YAA4B,EAC5B,SAAiB,EACjB,uBAAgC,EAChC,KAAa,EACb,aAAqB;IAErB,IAAI,CAAC,YAAY,EAAE,CAAC;QAClB,MAAM,IAAI,KAAK,CACb,iEAAiE,QAAQ,EAAE,CAC5E,CAAC;IACJ,CAAC;IAED,IAAI,MAAM,GAAG,uBAAuB;QAClC,CAAC,CAAC,sCAA0B,CAAC,KAAK;QAClC,CAAC,CAAC,sCAA0B,CAAC,UAAU,CAAC;IAE1C,MAAM,MAAM,GAAG,GAAG,YAAY,sBAAsB,eAAe,EAAE,CAAC;IAEtE,mCAAmC;IACnC,IAAI,YAAY,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC5B,IAAI,CAAC;YACH,MAAM,IAAA,8CAAkC,EACtC,SAAS,EACT,YAAY,EACZ,aAAa,CACd,CAAC;QACJ,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,2CAAgB,CAAC,QAAQ,CACvB,qDAAqD,QAAQ,EAAE,EAC/D,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,EACzD;gBACE,KAAK,EAAE,IAAA,wBAAa,EAAC,KAAK,CAAC;gBAC3B,SAAS,EAAE,SAAS;gBACpB,iBAAiB,EAAE,YAAY,CAAC,MAAM;aACvC,CACF,CAAC;QACJ,CAAC;IACH,CAAC;IAED,wDAAwD;IACxD,MAAM,WAAW,GAAG;QAClB,MAAM,EAAE,MAAM;QACd,YAAY,EAAE,YAAY,IAAI,EAAE;QAChC,mBAAmB,EAAE,mBAAmB,IAAI,EAAE;QAC9C,KAAK,EAAE,KAAK;KACb,CAAC;IAEF,2CAAgB,CAAC,OAAO,CACtB,oEAAoE,CAAC,YAAY,IAAI,EAAE,CAAC,CAAC,MAAM,kBAAkB,CAAC,mBAAmB,IAAI,EAAE,CAAC,CAAC,MAAM,oCAAoC,QAAQ,EAAE,EACjM;QACE,QAAQ;QACR,iBAAiB,EAAE,eAAe;QAClC,kBAAkB,EAAE,CAAC,YAAY,IAAI,EAAE,CAAC,CAAC,MAAM;QAC/C,0BAA0B,EAAE,CAAC,mBAAmB,IAAI,EAAE,CAAC,CAAC,MAAM;QAC9D,OAAO,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE;KACzC,CACF,CAAC;IAEF,IAAI,CAAC;QACH,MAAM,QAAQ,GAAG,MAAM,IAAA,+BAAoB,EACzC,MAAM,EACN,MAAM,EACN,WAAW,EACX,aAAa,CACd,CAAC;QAEF,MAAM,YAAY,GAAG,QAAQ,EAAE,IAAI,CAAC;QACpC,2CAAgB,CAAC,OAAO,CACtB,8EAA8E,CAAC,YAAY,IAAI,EAAE,CAAC,CAAC,MAAM,kBAAkB,CAAC,mBAAmB,IAAI,EAAE,CAAC,CAAC,MAAM,oCAAoC,QAAQ,EAAE,EAC3M;YACE,QAAQ;YACR,iBAAiB,EAAE,eAAe;YAClC,kBAAkB,EAAE,CAAC,YAAY,IAAI,EAAE,CAAC,CAAC,MAAM;YAC/C,0BAA0B,EAAE,CAAC,mBAAmB,IAAI,EAAE,CAAC,CAAC,MAAM;YAC9D,WAAW,EAAE,QAAQ,EAAE,MAAM;YAC7B,gBAAgB,EAAE,OAAO,YAAY,EAAE,OAAO,KAAK,QAAQ,CAAC,CAAC,CAAC,YAAY,CAAC,OAAO,CAAC,CAAC,CAAC,SAAS;YAC9F,eAAe,EAAE,YAAY,EAAE,MAAM;YACrC,QAAQ,EAAE,OAAO,CAAC,KAAK,EAAE,IAAI,EAAE,CAAC;SACjC,CACF,CAAC;IACJ,CAAC;IAAC,OAAO,QAAQ,EAAE,CAAC;QAClB,2CAAgB,CAAC,QAAQ,CACvB,qFAAqF,QAAQ,EAAE,EAC/F,QAAQ,YAAY,KAAK,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,SAAS,EAChD;YACE,QAAQ;YACR,iBAAiB,EAAE,eAAe;YAClC,kBAAkB,EAAE,CAAC,YAAY,IAAI,EAAE,CAAC,CAAC,MAAM;YAC/C,0BAA0B,EAAE,CAAC,mBAAmB,IAAI,EAAE,CAAC,CAAC,MAAM;YAC9D,aAAa,EAAE,IAAA,wBAAa,EAAC,QAAe,CAAC;YAC7C,aAAa,EAAG,IAAA,wBAAa,EAAC,QAAe,CAAS,CAAC,YAAY;SACpE,CACF,CAAC;QAEF,uCAAuC;QACvC,MAAM,QAAQ,CAAC;IACjB,CAAC;AACH,CAAC;AAED,KAAK,UAAU,8BAA8B,CAC3C,oBAA0C,EAC1C,mBAA4C,EAC5C,YAA4B,EAC5B,cAAkC,EAClC,YAAgC,EAChC,uBAAgC,EAChC,QAAgB,EAChB,aAAqB;IAErB,IAAI,MAAM,GAAG,uBAAuB;QAClC,CAAC,CAAC,sCAA0B,CAAC,SAAS;QACtC,CAAC,CAAC,sCAA0B,CAAC,UAAU,CAAC;IAE1C,MAAM,WAAW,GAAG,cAAc,IAAI,MAAM,CAAC;IAC7C,MAAM,mBAAmB,GAAG,GAAG,YAAY,oBAAoB,oBAAoB,CAAC,EAAE,YAAY,CAAC;IACnG,MAAM,wBAAwB,GAAG,GAAG,YAAY,oBAAoB,oBAAoB,CAAC,EAAE,iBAAiB,CAAC;IAE7G,yEAAyE;IACzE,MAAM,cAAc,GAAG,GAAG,YAAY,4CAA4C,oBAAoB,CAAC,EAAE,EAAE,CAAC;IAC5G,MAAM,mBAAmB,GAAG,MAAM,IAAA,+BAAoB,EACpD,KAAK,EACL,cAAc,EACd,IAAI,EACJ,aAAa,CACd,CAAC;IAEF,2CAAgB,CAAC,OAAO,CACtB,8DAA8D,oBAAoB,CAAC,EAAE,eAAe,QAAQ,EAAE,EAC9G,EAAE,QAAQ,EAAE,mBAAmB,CAAC,IAAI,EAAE,CACvC,CAAC;IAEF,IAAI,CAAC,mBAAmB,EAAE,IAAI,EAAE,WAAW,EAAE,CAAC;QAC5C,2CAAgB,CAAC,QAAQ,CACvB,qEAAqE,oBAAoB,CAAC,EAAE,eAAe,QAAQ,EAAE,EACrH,SAAS,EACT,EAAE,QAAQ,EAAE,mBAAmB,EAAE,IAAI,EAAE,CACxC,CAAC;QACF,MAAM,IAAI,KAAK,CAAC,0CAA0C,oBAAoB,CAAC,EAAE,EAAE,CAAC,CAAC;IACvF,CAAC;IAED,MAAM,WAAW,GAAG,mBAAmB,CAAC,IAAI,CAAC,WAAW,CAAC;IAEzD,MAAM,cAAc,GAClB,oBAAoB,CAAC,gBAAgB,EAAE,IAAI,EAAE;QAC7C,mBAAmB,CAAC,IAAI,CAAC,aAAa,EAAE,IAAI,EAAE,CAAC;IAEjD,IAAI,CAAC,cAAc,EAAE,CAAC;QACpB,2CAAgB,CAAC,QAAQ,CACvB,uDAAuD,oBAAoB,CAAC,EAAE,eAAe,QAAQ,EAAE,EACvG,SAAS,EACT;YACE,QAAQ,EAAE,mBAAmB,EAAE,IAAI;YACnC,gBAAgB,EAAE,oBAAoB,CAAC,gBAAgB;SACxD,CACF,CAAC;QACF,MAAM,IAAI,KAAK,CAAC,gDAAgD,oBAAoB,CAAC,EAAE,EAAE,CAAC,CAAC;IAC7F,CAAC;IAED,2CAA2C;IAC3C,MAAM,WAAW,GAAG;QAClB,SAAS,EAAE,oBAAoB,EAAE,WAAW,EAAE,SAAS,IAAI,EAAE;QAC7D,QAAQ,EAAE,oBAAoB,EAAE,WAAW,EAAE,QAAQ,IAAI,EAAE;QAC3D,KAAK,EAAE,oBAAoB,EAAE,WAAW,EAAE,KAAK,IAAI,EAAE;QACrD,SAAS,EAAE,oBAAoB,EAAE,WAAW,EAAE,SAAS,IAAI,IAAI;QAC/D,kEAAkE;QAClE,GAAG,EAAE,oBAAoB,EAAE,WAAW,EAAE,GAAG,IAAI,EAAE;QACjD,GAAG,EAAE,oBAAoB,EAAE,WAAW,EAAE,GAAG,IAAI,IAAI;QACnD,MAAM,EAAE,oBAAoB,EAAE,WAAW,EAAE,MAAM,IAAI,IAAI;QACzD,UAAU,EAAE,oBAAoB,EAAE,WAAW,EAAE,UAAU,IAAI,EAAE;KAChE,CAAC;IAEF,MAAM,OAAO,GAAG,GAAG,YAAY,kBAAkB,WAAW,EAAE,CAAC;IAC/D,MAAM,YAAY,GAAG,MAAM,IAAA,+BAAoB,EAC7C,OAAO,EACP,OAAO,EACP,WAAW,EACX,aAAa,CACd,CAAC;IAEF,2CAAgB,CAAC,OAAO,CACtB,8BAA8B,WAAW,eAAe,QAAQ,EAAE,EAClE,EAAE,QAAQ,EAAE,YAAY,CAAC,IAAI,EAAE,CAChC,CAAC;IAEF,IAAI,CAAC;QACH,6DAA6D;QAC7D,IAAI,mBAAmB,CAAC,eAAe,CAAC,MAAM,GAAG,CAAC,EAAE,C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@@ -1,113 +1,9 @@
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1
1
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import { RejectReason } from './oht.types';
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2
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export type ParsingWarningCategory = 'patient_data' | 'mapping' | 'measurements' | 'ingestion' | 'infrastructure' | 'general';
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2
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export interface Destination {
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slack: boolean;
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4
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notes: boolean;
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5
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bi: boolean;
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}
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8
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export type ParsingErrorSeverity = 'warning' | 'error' | 'critical';
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9
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/** Canonical parsing error types — Layer 1 local + Layer 2 Core profiles. */
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10
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export declare enum ParsingErrorType {
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11
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VALUE_NOT_PLAUSIBLE = "VALUE_NOT_PLAUSIBLE",
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NUMERIC_BIOMARKER_ALPHANUMERIC_VALUE = "NUMERIC_BIOMARKER_ALPHANUMERIC_VALUE",
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DUPLICATE_BIOMARKER = "DUPLICATE_BIOMARKER",
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UNIT_NOT_EXTRACTED = "UNIT_NOT_EXTRACTED",
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VALUE_NOT_EXTRACTED = "VALUE_NOT_EXTRACTED",
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RANGE_NOT_EXTRACTED = "RANGE_NOT_EXTRACTED",
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BIOMARKER_NOT_FOUND = "BIOMARKER_NOT_FOUND",
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TRANSFORMATION_RULES_FETCH_FAILED = "TRANSFORMATION_RULES_FETCH_FAILED",
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TRANSFORMATION_RULES_APPLY_PARTIAL = "TRANSFORMATION_RULES_APPLY_PARTIAL",
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TRANSFORMATION_RULES_APPLY_FAILED = "TRANSFORMATION_RULES_APPLY_FAILED",
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MEASUREMENTS_EXTRACTION_FAILED = "MEASUREMENTS_EXTRACTION_FAILED",
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NO_LAB_KEYS = "NO_LAB_KEYS",
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23
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REJECTED_NO_BIOMARKERS = "REJECTED_NO_BIOMARKERS",
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24
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REJECTED_UNDERAGE_PATIENT = "REJECTED_UNDERAGE_PATIENT",
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REJECTED_MISSING_PATIENT_ID = "REJECTED_MISSING_PATIENT_ID",
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26
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REJECTED_MISSING_PATIENT_SEX = "REJECTED_MISSING_PATIENT_SEX",
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27
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-
FATAL_VALIDATION = "FATAL_VALIDATION",
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28
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-
FATAL_NORMALIZATION = "FATAL_NORMALIZATION",
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29
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-
FATAL_FILE_IO = "FATAL_FILE_IO",
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30
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FATAL_PARSER_ERROR = "FATAL_PARSER_ERROR"
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31
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}
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export interface ParsingErrorCatalogEntry {
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severity: ParsingErrorSeverity;
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message: string;
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35
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clientMessage: string;
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36
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/** Static context key or `{labKey}` placeholder for exam-scoped errors. */
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37
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contextKey: string;
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38
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rejectReason?: RejectReason;
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39
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destinations: Destination;
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40
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pipelineStep: string;
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41
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-
warningType?: string;
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42
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-
warningCategory?: ParsingWarningCategory;
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43
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}
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44
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-
export interface LocalParsingError {
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45
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errorType: ParsingErrorType;
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46
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severity: ParsingErrorSeverity;
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47
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message: string;
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48
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-
clientMessage: string;
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pipelineStep: string;
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contextKey: string;
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51
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item?: string;
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52
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destinations: Destination;
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53
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-
rejectReason?: RejectReason;
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54
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-
biomarkerId?: number;
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55
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-
biomarkerName?: string;
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56
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-
errorTrace?: Record<string, unknown>;
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57
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-
ohtExam?: object;
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58
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-
originalExam?: object;
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59
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-
timestamp: Date;
|
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60
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-
}
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61
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-
export interface ParsingErrorOccurrenceSnapshot {
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dataImportFileUploadId: string;
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63
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message: string;
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64
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-
pipelineStep: string;
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65
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-
severity: ParsingErrorSeverity;
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66
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-
rejectReason?: RejectReason | null;
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67
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-
errorTrace?: Record<string, unknown>;
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68
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-
occurredAt: string;
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69
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-
}
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70
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-
export interface ErrorProfilePayload {
|
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71
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-
contextKey: string;
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72
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issueType: ParsingErrorType;
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73
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severity: ParsingErrorSeverity;
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74
|
-
message: string;
|
|
75
|
-
pipelineStep: string;
|
|
76
|
-
rejectReason?: RejectReason | null;
|
|
77
|
-
biomarkerId?: number;
|
|
78
|
-
biomarkerName?: string;
|
|
79
|
-
errorTrace?: Record<string, unknown>;
|
|
80
|
-
ohtExam?: object;
|
|
81
|
-
originalExam?: object;
|
|
82
|
-
source: string;
|
|
83
|
-
uploadedByUserId?: string;
|
|
84
|
-
occurrence?: ParsingErrorOccurrenceSnapshot;
|
|
85
|
-
occurrences?: ParsingErrorOccurrenceSnapshot[];
|
|
86
|
-
occurrencesCount?: number;
|
|
87
|
-
}
|
|
88
|
-
export interface RecordParsingErrorDetails {
|
|
89
|
-
item?: string;
|
|
90
|
-
labKey?: string;
|
|
91
|
-
customContextKey?: string;
|
|
92
|
-
messageSuffix?: string;
|
|
93
|
-
pipelineStep?: string;
|
|
94
|
-
rejectReason?: RejectReason;
|
|
95
|
-
biomarkerId?: number;
|
|
96
|
-
biomarkerName?: string;
|
|
97
|
-
errorTrace?: Record<string, unknown>;
|
|
98
|
-
ohtExam?: object;
|
|
99
|
-
originalExam?: object;
|
|
100
|
-
destinations?: Partial<Destination>;
|
|
101
|
-
severity?: ParsingErrorSeverity;
|
|
102
|
-
}
|
|
103
|
-
export interface RecordParsingErrorOptions {
|
|
104
|
-
notifySlack?: boolean;
|
|
105
|
-
notifyNotes?: boolean;
|
|
106
|
-
notifyBi?: boolean;
|
|
107
|
-
}
|
|
108
|
-
export declare const PARSING_ERROR_CATALOG: Record<ParsingErrorType, ParsingErrorCatalogEntry>;
|
|
109
|
-
export declare function resolveParsingErrorContextKey(catalogContextKey: string, details?: Pick<RecordParsingErrorDetails, 'labKey' | 'customContextKey'>): string;
|
|
110
|
-
export declare function buildParsingErrorMessage(catalogMessage: string, details?: Pick<RecordParsingErrorDetails, 'item' | 'messageSuffix'>): string;
|
|
111
7
|
export interface ErrorMessage {
|
|
112
8
|
destination: Destination;
|
|
113
9
|
message: string;
|