@openhealth/oht-custom-parser-lib 0.5.49 → 0.5.50

package/dist/types/error.types.js

@@ -1,9 +1,248 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.ERROR_MESSAGES = exports.ERROR_CATALOG = exports.ErrorCode = void 0;
+exports.ERROR_MESSAGES = exports.ERROR_CATALOG = exports.ErrorCode = exports.PARSING_ERROR_CATALOG = exports.ParsingErrorType = void 0;
+exports.resolveParsingErrorContextKey = resolveParsingErrorContextKey;
+exports.buildParsingErrorMessage = buildParsingErrorMessage;
 exports.getErrorMessage = getErrorMessage;
 exports.getRejectReason = getRejectReason;
 const oht_types_1 = require("./oht.types");
+/** Canonical parsing error types — Layer 1 local + Layer 2 Core profiles. */
+var ParsingErrorType;
+(function (ParsingErrorType) {
+    ParsingErrorType["VALUE_NOT_PLAUSIBLE"] = "VALUE_NOT_PLAUSIBLE";
+    ParsingErrorType["NUMERIC_BIOMARKER_ALPHANUMERIC_VALUE"] = "NUMERIC_BIOMARKER_ALPHANUMERIC_VALUE";
+    ParsingErrorType["DUPLICATE_BIOMARKER"] = "DUPLICATE_BIOMARKER";
+    ParsingErrorType["UNIT_NOT_EXTRACTED"] = "UNIT_NOT_EXTRACTED";
+    ParsingErrorType["VALUE_NOT_EXTRACTED"] = "VALUE_NOT_EXTRACTED";
+    ParsingErrorType["RANGE_NOT_EXTRACTED"] = "RANGE_NOT_EXTRACTED";
+    ParsingErrorType["BIOMARKER_NOT_FOUND"] = "BIOMARKER_NOT_FOUND";
+    ParsingErrorType["TRANSFORMATION_RULES_FETCH_FAILED"] = "TRANSFORMATION_RULES_FETCH_FAILED";
+    ParsingErrorType["TRANSFORMATION_RULES_APPLY_PARTIAL"] = "TRANSFORMATION_RULES_APPLY_PARTIAL";
+    ParsingErrorType["TRANSFORMATION_RULES_APPLY_FAILED"] = "TRANSFORMATION_RULES_APPLY_FAILED";
+    ParsingErrorType["MEASUREMENTS_EXTRACTION_FAILED"] = "MEASUREMENTS_EXTRACTION_FAILED";
+    ParsingErrorType["NO_LAB_KEYS"] = "NO_LAB_KEYS";
+    ParsingErrorType["REJECTED_NO_BIOMARKERS"] = "REJECTED_NO_BIOMARKERS";
+    ParsingErrorType["REJECTED_UNDERAGE_PATIENT"] = "REJECTED_UNDERAGE_PATIENT";
+    ParsingErrorType["REJECTED_MISSING_PATIENT_ID"] = "REJECTED_MISSING_PATIENT_ID";
+    ParsingErrorType["REJECTED_MISSING_PATIENT_SEX"] = "REJECTED_MISSING_PATIENT_SEX";
+    ParsingErrorType["FATAL_VALIDATION"] = "FATAL_VALIDATION";
+    ParsingErrorType["FATAL_NORMALIZATION"] = "FATAL_NORMALIZATION";
+    ParsingErrorType["FATAL_FILE_IO"] = "FATAL_FILE_IO";
+    ParsingErrorType["FATAL_PARSER_ERROR"] = "FATAL_PARSER_ERROR";
+})(ParsingErrorType || (exports.ParsingErrorType = ParsingErrorType = {}));
+const defaultDestinations = { slack: false, notes: false, bi: false };
+exports.PARSING_ERROR_CATALOG = {
+    [ParsingErrorType.VALUE_NOT_PLAUSIBLE]: {
+        severity: 'warning',
+        message: 'Value is not plausible for:[PLACEHOLDER]',
+        clientMessage: 'The result for this test falls outside the expected range.',
+        contextKey: '{labKey}',
+        destinations: { slack: false, notes: true, bi: true },
+        pipelineStep: 'extract_measurements',
+        warningType: 'implausible_value',
+        warningCategory: 'measurements',
+    },
+    [ParsingErrorType.NUMERIC_BIOMARKER_ALPHANUMERIC_VALUE]: {
+        severity: 'warning',
+        message: 'Numeric biomarker received alphanumeric value for:[PLACEHOLDER]',
+        clientMessage: 'A numeric test received a text result instead of a number.',
+        contextKey: '{labKey}',
+        destinations: { slack: false, notes: true, bi: true },
+        pipelineStep: 'extract_measurements',
+        warningType: 'numeric_biomarker_alphanumeric_value',
+        warningCategory: 'measurements',
+    },
+    [ParsingErrorType.DUPLICATE_BIOMARKER]: {
+        severity: 'warning',
+        message: 'Biomarkers Duplicated keys:[PLACEHOLDER]',
+        clientMessage: 'The same test appears more than once in this report.',
+        contextKey: '{labKey}',
+        destinations: { slack: false, notes: false, bi: true },
+        pipelineStep: 'extract_measurements',
+        warningType: 'duplicate_biomarker_measurement',
+        warningCategory: 'measurements',
+    },
+    [ParsingErrorType.UNIT_NOT_EXTRACTED]: {
+        severity: 'error',
+        message: 'Unit not extracted correctly for:[PLACEHOLDER]',
+        clientMessage: 'We could not identify the unit for this test result.',
+        contextKey: '{labKey}',
+        destinations: { slack: true, notes: true, bi: true },
+        pipelineStep: 'extract_measurements',
+        warningType: 'unit_extraction_failed',
+        warningCategory: 'measurements',
+    },
+    [ParsingErrorType.VALUE_NOT_EXTRACTED]: {
+        severity: 'error',
+        message: 'Value not extracted correctly for:[PLACEHOLDER]',
+        clientMessage: 'We could not read the value for this test result.',
+        contextKey: '{labKey}',
+        destinations: { slack: true, notes: true, bi: true },
+        pipelineStep: 'extract_measurements',
+        warningType: 'value_extraction_failed',
+        warningCategory: 'measurements',
+    },
+    [ParsingErrorType.RANGE_NOT_EXTRACTED]: {
+        severity: 'error',
+        message: 'Range not extracted correctly for:[PLACEHOLDER]',
+        clientMessage: 'We could not read the reference range for this test.',
+        contextKey: '{labKey}',
+        destinations: { slack: true, notes: true, bi: true },
+        pipelineStep: 'extract_measurements',
+        warningType: 'range_extraction_failed',
+        warningCategory: 'measurements',
+    },
+    [ParsingErrorType.BIOMARKER_NOT_FOUND]: {
+        severity: 'error',
+        message: 'Biomarker not found for:[PLACEHOLDER]',
+        clientMessage: 'This test could not be matched to our catalog.',
+        contextKey: '{labKey}',
+        destinations: { slack: true, notes: true, bi: true },
+        pipelineStep: 'extract_measurements',
+        warningType: 'biomarker_not_found',
+        warningCategory: 'mapping',
+    },
+    [ParsingErrorType.TRANSFORMATION_RULES_FETCH_FAILED]: {
+        severity: 'error',
+        message: 'Failed fetching the partner transformation rules chains:',
+        clientMessage: 'Some formatting rules could not be loaded. The report may be incomplete.',
+        contextKey: 'custom:transformationRules',
+        destinations: { slack: true, notes: true, bi: false },
+        pipelineStep: 'get_transformation_rules',
+        warningType: 'transformation_rules_fetch_failed',
+        warningCategory: 'infrastructure',
+    },
+    [ParsingErrorType.TRANSFORMATION_RULES_APPLY_PARTIAL]: {
+        severity: 'error',
+        message: 'Failed applying some transformation rules:',
+        clientMessage: 'Some formatting rules could not be applied to this report.',
+        contextKey: 'custom:transformationRules',
+        destinations: { slack: false, notes: true, bi: false },
+        pipelineStep: 'extract_measurements',
+        warningType: 'transformation_rules_apply_partial',
+        warningCategory: 'infrastructure',
+    },
+    [ParsingErrorType.TRANSFORMATION_RULES_APPLY_FAILED]: {
+        severity: 'error',
+        message: 'Failed applying the transformation rules for filename',
+        clientMessage: 'Formatting rules failed for this report.',
+        contextKey: 'custom:transformationRules',
+        destinations: { slack: true, notes: true, bi: false },
+        pipelineStep: 'extract_measurements',
+        warningType: 'transformation_rules_apply_failed',
+        warningCategory: 'infrastructure',
+    },
+    [ParsingErrorType.MEASUREMENTS_EXTRACTION_FAILED]: {
+        severity: 'error',
+        message: 'Measurements extraction failed:',
+        clientMessage: 'Some test results could not be extracted from this report.',
+        contextKey: 'custom:measurementsExtraction',
+        destinations: { slack: false, notes: true, bi: false },
+        pipelineStep: 'extract_measurements',
+        warningType: 'measurements_extraction_failed',
+        warningCategory: 'measurements',
+    },
+    [ParsingErrorType.NO_LAB_KEYS]: {
+        severity: 'error',
+        message: 'No lab keys found, filename:',
+        clientMessage: 'No test identifiers were found in this report.',
+        contextKey: 'custom:unexpected',
+        destinations: { slack: true, notes: false, bi: false },
+        pipelineStep: 'extract_measurements',
+        warningType: 'no_lab_keys',
+        warningCategory: 'measurements',
+    },
+    [ParsingErrorType.REJECTED_NO_BIOMARKERS]: {
+        severity: 'critical',
+        message: 'File rejected: biomarkers parsing failed. Reason:',
+        clientMessage: 'No recognized test results were found in this report.',
+        contextKey: 'custom:biomarkers',
+        rejectReason: oht_types_1.RejectReason.NO_IN_PANEL_BIOMARKER,
+        destinations: { slack: false, notes: false, bi: false },
+        pipelineStep: 'extract_measurements',
+    },
+    [ParsingErrorType.REJECTED_UNDERAGE_PATIENT]: {
+        severity: 'critical',
+        message: 'File rejected: patientAge parsing failed. Reason:',
+        clientMessage: 'Reports for patients under 18 are not accepted.',
+        contextKey: 'custom:patientAge',
+        rejectReason: oht_types_1.RejectReason.UNDERAGE_PERSON,
+        destinations: { slack: false, notes: false, bi: false },
+        pipelineStep: 'create_report_with_patient',
+    },
+    [ParsingErrorType.REJECTED_MISSING_PATIENT_ID]: {
+        severity: 'critical',
+        message: 'File rejected: patientExternalId parsing failed. Reason:',
+        clientMessage: 'Patient identification is missing from this report.',
+        contextKey: 'custom:patientExternalId',
+        rejectReason: oht_types_1.RejectReason.MISSING_EXTERNAL_PATIENT_ID,
+        destinations: { slack: true, notes: false, bi: false },
+        pipelineStep: 'create_report_with_patient',
+    },
+    [ParsingErrorType.REJECTED_MISSING_PATIENT_SEX]: {
+        severity: 'critical',
+        message: 'File rejected: patientSex parsing failed. Reason:',
+        clientMessage: 'Patient sex is missing from this report.',
+        contextKey: 'custom:patientSex',
+        rejectReason: oht_types_1.RejectReason.MISSING_PATIENT_SEX,
+        destinations: { slack: true, notes: false, bi: false },
+        pipelineStep: 'create_report_with_patient',
+    },
+    [ParsingErrorType.FATAL_VALIDATION]: {
+        severity: 'critical',
+        message: 'Validation failed:',
+        clientMessage: 'Processing could not be completed. Please try again or contact support.',
+        contextKey: 'custom:validation',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+        destinations: { slack: false, notes: false, bi: false },
+        pipelineStep: 'validate_context',
+    },
+    [ParsingErrorType.FATAL_NORMALIZATION]: {
+        severity: 'critical',
+        message: 'Normalization failed:',
+        clientMessage: 'Processing could not be completed. Please try again or contact support.',
+        contextKey: 'custom:normalization',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+        destinations: { slack: false, notes: false, bi: false },
+        pipelineStep: 'normalization',
+    },
+    [ParsingErrorType.FATAL_FILE_IO]: {
+        severity: 'critical',
+        message: 'Not possible to fetch file from bucket.',
+        clientMessage: 'Processing could not be completed. Please try again or contact support.',
+        contextKey: 'custom:fileIo',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+        destinations: { slack: false, notes: false, bi: false },
+        pipelineStep: 'file_fetch',
+    },
+    [ParsingErrorType.FATAL_PARSER_ERROR]: {
+        severity: 'critical',
+        message: 'Unhandled parser error:',
+        clientMessage: 'Processing could not be completed. Please try again or contact support.',
+        contextKey: 'custom:unexpected',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+        destinations: { slack: false, notes: false, bi: false },
+        pipelineStep: 'error_handling',
+    },
+};
+function resolveParsingErrorContextKey(catalogContextKey, details) {
+    if (details?.customContextKey) {
+        return details.customContextKey;
+    }
+    if (catalogContextKey === '{labKey}') {
+        return details?.labKey ?? 'custom:unexpected';
+    }
+    return catalogContextKey;
+}
+function buildParsingErrorMessage(catalogMessage, details) {
+    let message = catalogMessage;
+    if (details?.messageSuffix) {
+        message = message.endsWith(':') || message.endsWith(' for filename')
+            ? `${message} ${details.messageSuffix}`
+            : `${message}: ${details.messageSuffix}`;
+    }
+    return message;
+}
 /**
  * Unified error codes for file-upload / parser / normalizer error handling.
  * Coding: ERR_{DOMAIN}_{DESCRIPTION}

package/dist/types/error.types.js.map

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package/dist/util-ts/dataUtils.d.ts

@@ -16,6 +16,7 @@ export declare const extractValue: (obj: any, position?: string) => any;
 export declare const getMappedBiomarkers: (partnerId: string, ohtCoreApiKey: string) => Promise<any>;
 export declare const getMappedBiomarkersLatest: (partnerId: string, ohtCoreApiKey: string) => Promise<any>;
 export declare const updatePartnerCustomParserUnmappedLabKeys: (partnerId: string, unknownMeasurementsBulk: UnknownMeasurementsBulk, ohtCoreApiKey: string) => Promise<void>;
+export declare const bulkUpsertCustomParserErrorProfiles: (partnerId: string, errorProfiles: import("../types/error.types").ErrorProfilePayload[], ohtCoreApiKey: string) => Promise<void>;
 export declare const bulkCreateCustomParserUnknownUnits: (partnerId: string, unknownUnits: UnknownUnits[], ohtCoreApiKey: string) => Promise<void>;
 /**
  * Fetch synonym units from oht-core API endpoint

package/dist/util-ts/dataUtils.js

@@ -1,6 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.fetchSynonymUnits = exports.bulkCreateCustomParserUnknownUnits = exports.updatePartnerCustomParserUnmappedLabKeys = exports.getMappedBiomarkersLatest = exports.getMappedBiomarkers = exports.extractValue = void 0;
+exports.fetchSynonymUnits = exports.bulkCreateCustomParserUnknownUnits = exports.bulkUpsertCustomParserErrorProfiles = exports.updatePartnerCustomParserUnmappedLabKeys = exports.getMappedBiomarkersLatest = exports.getMappedBiomarkers = exports.extractValue = void 0;
 exports.resolveUnitFromSynonyms = resolveUnitFromSynonyms;
 exports.isBiomarkerValueNumerical = isBiomarkerValueNumerical;
 exports.isBiomarkerExternalNoVisualRange = isBiomarkerExternalNoVisualRange;
@@ -113,6 +113,20 @@ const updatePartnerCustomParserUnmappedLabKeys = async (partnerId, unknownMeasur
     });
 };
 exports.updatePartnerCustomParserUnmappedLabKeys = updatePartnerCustomParserUnmappedLabKeys;
+// function that uses POST request at /v1/customparser/partners/{partnerId}/parsing-issues/bulk
+const bulkUpsertCustomParserErrorProfiles = async (partnerId, errorProfiles, ohtCoreApiKey) => {
+    const response = await (0, apiUtils_1.makeApiCallWithRetry)('post', `${OHT_CORE_URL}/v1/customparser/partners/${partnerId}/parsing-issues/bulk`, {
+        parsingIssues: errorProfiles,
+    }, ohtCoreApiKey);
+    const bulkData = response?.data;
+    processingLogger_service_1.processingLogger.logInfo(`Resp: POST /v1/customparser/partners/${partnerId}/parsing-issues/bulk`, {
+        partner_id: partnerId,
+        profile_count: errorProfiles?.length ?? 0,
+        http_status: response?.status,
+        upserted_count: typeof bulkData?.upsertedCount === 'number' ? bulkData.upsertedCount : undefined,
+    });
+};
+exports.bulkUpsertCustomParserErrorProfiles = bulkUpsertCustomParserErrorProfiles;
 // function that uses POST request at /v1/synonym/partners/{partnerId}/unknown-units/bulk to send the unknownUnits to the server
 const bulkCreateCustomParserUnknownUnits = async (partnerId, unknownUnits, ohtCoreApiKey) => {
     const response = await (0, apiUtils_1.makeApiCallWithRetry)('post', `${OHT_CORE_URL}/v1/synonym/partners/${partnerId}/unknown-units/bulk`, {

package/dist/util-ts/dataUtils.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@openhealth/oht-custom-parser-lib",
-  "version": "0.5.49",
+  "version": "0.5.50",
   "description": "Shared nodejs lib with with reusable functions",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",