@openhealth/oht-custom-parser-lib 0.5.47 → 0.5.49
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/index.d.ts +1 -1
- package/dist/index.js.map +1 -1
- package/dist/service/ohtReportMeasurementsExtractor.service.js +7 -7
- package/dist/service/ohtReportMeasurementsExtractor.service.js.map +1 -1
- package/dist/service/transformationRules.service.d.ts +2 -2
- package/dist/service/transformationRules.service.js +4 -2
- package/dist/service/transformationRules.service.js.map +1 -1
- package/dist/types/oht.types.d.ts +3 -0
- package/dist/types/oht.types.js.map +1 -1
- package/dist/types/transformationRules.types.d.ts +6 -6
- package/package.json +1 -1
package/dist/index.d.ts
CHANGED
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@@ -6,7 +6,7 @@ export { getSlackFileIssueNotificationMessage, sendMessageToSlack } from './serv
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6
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export { aggregateMessages, aggregateBiMessages, publishToTopic, generateBIMessages } from './service/errorHandling.service';
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export { applyRules as applyTransformationRules, validateJsonataExpression as validateTransformationRuleExpression, } from './service/transformationRules.service';
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export { LabToOhtContract, LabToOhtMapper, UnknownMeasurementExtraction, ReferenceAsAnnotation, UnitExtraction, RangeExtraction, RangeExtractionResponse, ValueExtraction, unitSynonyms, ValueExtractionResponse, SynonymUnit, UnknownUnits, TransformationRulesChains, } from './types/custom-parser.types';
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9
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-
export { AcfBiomarkerRangeAnnotationCheck, AcfBiomarkerGenericDisclaimerLogic, ManualCheck, BiomarkerCompatibility, ReferenceRangeType, AcfReferenceRange, VisualRange, NameAlias, AlternativeUnit, BiomarkerAcf, Biomarker, PipelineStep, DigitizationStatus, MeasurementValueComparator, BiomarkerValueType, DataImportFileUploadStatus, Sex, Digitization, PatientInfo, UnknownMeasurement, UnmappedLabKey, Measurement, DataImportFileUpload, MessagePayload, SignedUpload, ReportStyleConfig, LanguageCode, BiomarkerCustomisation, PartnerCustomPanel, ReportDisplaySettings, ReportCustomisation, OHTPartner, UploadType, PartnerCustomization, RejectReason, AnnotationLabKey, ExtractionPath, AnnotationConfig, OhtReport, OhtMetadata, OhtPatient, Exam, OhtExam, OhtRange, OriginalExam, } from './types/oht.types';
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9
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+
export { AcfBiomarkerRangeAnnotationCheck, AcfBiomarkerGenericDisclaimerLogic, ManualCheck, BiomarkerCompatibility, ReferenceRangeType, AcfReferenceRange, VisualRange, NameAlias, AlternativeUnit, BiomarkerAcf, Biomarker, PipelineStep, DigitizationStatus, MeasurementValueComparator, BiomarkerValueType, DataImportFileUploadStatus, Sex, Digitization, PatientInfo, UnknownMeasurement, UnmappedLabKey, Measurement, DataImportFileUpload, MessagePayload, SignedUpload, ReportStyleConfig, LanguageCode, BiomarkerCustomisation, PartnerCustomPanel, ReportDisplaySettings, ReportCustomisation, OHTPartner, UploadType, PartnerCustomization, RejectReason, AnnotationLabKey, ExtractionPath, AnnotationConfig, OhtReport, OhtMetadata, OhtPatient, Exam, OhtExam, ExamKind, OhtRange, OriginalExam, } from './types/oht.types';
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export { ErrorMessage, ErrorCode, ERROR_CATALOG, ERROR_MESSAGES, getErrorMessage, getRejectReason, } from './types/error.types';
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export { handleError, ValidationError, JSON_VALIDATION_ERROR_NAME, shouldSendSlackNotification, extractFormattedRejectReason, mapErrorToRejectReason, } from './service/fileUploadErrorHandler.service';
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export type { TransformationRule, TransformationContext, ApplyRulesResult as TransformationApplyRulesResult, ApplyRulesOptions as TransformationApplyRulesOptions, ValidationResult as TransformationValidationResult, } from './types/transformationRules.types';
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package/dist/index.js.map
CHANGED
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../index.ts"],"names":[],"mappings":";;;;;;;AAAA,mBAAmB;AACnB,yEAGyC;AAFvC,uIAAA,8BAA8B,OAAA;AAC9B,gIAAA,uBAAuB,OAAA;AAEzB,mFAU8C;AAT5C,oIAAA,sBAAsB,OAAA;AACtB,yHAAA,WAAW,OAAA;AACX,+HAAA,iBAAiB,OAAA;AACjB,2HAAA,aAAa,OAAA;AACb,6HAAA,eAAe,OAAA;AACf,yIAAA,2BAA2B,OAAA;AAC3B,qIAAA,uBAAuB,OAAA;AAEvB,2IAAA,6BAA6B,OAAA;AAG/B,2GAE0D;AADxD,wJAAA,8BAA8B,OAAA;AAGhC,+FASoD;AARlD,4IAAA,wBAAwB,OAAA;AACxB,gJAAA,4BAA4B,OAAA;AAC5B,0IAAA,sBAAsB,OAAA;AACtB,8IAAA,0BAA0B,OAAA;AAC1B,kIAAA,cAAc,OAAA;AACd,gJAAA,4BAA4B,OAAA;AAC5B,+HAAA,WAAW,OAAA;AACX,oJAAA,gCAAgC,OAAA;AAGlC,yEAEyC;AADvC,6IAAA,oCAAoC,OAAA;AAAE,2HAAA,kBAAkB,OAAA;AAE1D,yEAKyC;AAJvC,0HAAA,iBAAiB,OAAA;AACjB,4HAAA,mBAAmB,OAAA;AACnB,uHAAA,cAAc,OAAA;AACd,2HAAA,kBAAkB,OAAA;AAEpB,qFAG+C;AAF7C,uIAAA,UAAU,OAA4B;AACtC,mJAAA,yBAAyB,OAAwC;AAGnE,gBAAgB;AAChB,mEAcqC;AALnC,mHAAA,YAAY,OAAA;AAMd,+
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../index.ts"],"names":[],"mappings":";;;;;;;AAAA,mBAAmB;AACnB,yEAGyC;AAFvC,uIAAA,8BAA8B,OAAA;AAC9B,gIAAA,uBAAuB,OAAA;AAEzB,mFAU8C;AAT5C,oIAAA,sBAAsB,OAAA;AACtB,yHAAA,WAAW,OAAA;AACX,+HAAA,iBAAiB,OAAA;AACjB,2HAAA,aAAa,OAAA;AACb,6HAAA,eAAe,OAAA;AACf,yIAAA,2BAA2B,OAAA;AAC3B,qIAAA,uBAAuB,OAAA;AAEvB,2IAAA,6BAA6B,OAAA;AAG/B,2GAE0D;AADxD,wJAAA,8BAA8B,OAAA;AAGhC,+FASoD;AARlD,4IAAA,wBAAwB,OAAA;AACxB,gJAAA,4BAA4B,OAAA;AAC5B,0IAAA,sBAAsB,OAAA;AACtB,8IAAA,0BAA0B,OAAA;AAC1B,kIAAA,cAAc,OAAA;AACd,gJAAA,4BAA4B,OAAA;AAC5B,+HAAA,WAAW,OAAA;AACX,oJAAA,gCAAgC,OAAA;AAGlC,yEAEyC;AADvC,6IAAA,oCAAoC,OAAA;AAAE,2HAAA,kBAAkB,OAAA;AAE1D,yEAKyC;AAJvC,0HAAA,iBAAiB,OAAA;AACjB,4HAAA,mBAAmB,OAAA;AACnB,uHAAA,cAAc,OAAA;AACd,2HAAA,kBAAkB,OAAA;AAEpB,qFAG+C;AAF7C,uIAAA,UAAU,OAA4B;AACtC,mJAAA,yBAAyB,OAAwC;AAGnE,gBAAgB;AAChB,mEAcqC;AALnC,mHAAA,YAAY,OAAA;AAMd,+CA+C2B;AA9CzB,6HAAA,gCAAgC,OAAA;AAChC,+HAAA,kCAAkC,OAAA;AAClC,wGAAA,WAAW,OAAA;AACX,mHAAA,sBAAsB,OAAA;AACtB,+GAAA,kBAAkB,OAAA;AAOlB,yGAAA,YAAY,OAAA;AACZ,+GAAA,kBAAkB,OAAA;AAClB,uHAAA,0BAA0B,OAAA;AAC1B,+GAAA,kBAAkB,OAAA;AAClB,uHAAA,0BAA0B,OAAA;AAC1B,gGAAA,GAAG,OAAA;AAgBH,uGAAA,UAAU,OAAA;AAEV,yGAAA,YAAY,OAAA;AAad,mDAO6B;AAL3B,wGAAA,SAAS,OAAA;AACT,4GAAA,aAAa,OAAA;AACb,6GAAA,cAAc,OAAA;AACd,8GAAA,eAAe,OAAA;AACf,8GAAA,eAAe,OAAA;AAEjB,2FAOkD;AANhD,6HAAA,WAAW,OAAA;AACX,iIAAA,eAAe,OAAA;AACf,4IAAA,0BAA0B,OAAA;AAC1B,6IAAA,2BAA2B,OAAA;AAC3B,8IAAA,4BAA4B,OAAA;AAC5B,wIAAA,sBAAsB,OAAA;AAUxB,4BAA4B;AAC5B,+EAQ4C;AAP1C,4HAAA,gBAAgB,OAAA;AAGhB,mIAAA,uBAAuB,OAAA;AACvB,oIAAA,wBAAwB,OAAA;AACxB,0HAAA,cAAc,OAAA;AACd,+HAAA,mBAAmB,OAAA;AAGrB,kBAAkB;AAClB,+CAAuE;AAA/D,gHAAA,oBAAoB,OAAA;AAAE,yGAAA,aAAa,OAAA;AAC3C,iDAAiN;AAAzM,yGAAA,YAAY,OAAA;AAAE,sHAAA,yBAAyB,OAAA;AAAE,6HAAA,gCAAgC,OAAA;AAAE,oHAAA,uBAAuB,OAAA;AAAE,8GAAA,iBAAiB,OAAA;AAAE,oHAAA,uBAAuB,OAAA;AAAE,4GAAA,eAAe,OAAA;AAAE,wGAAA,WAAW,OAAA;AACpL,mEAAuF;AAA/E,wHAAA,kBAAkB,OAAA;AAAE,2HAAA,qBAAqB,OAAA;AACjD,mDAA2D;AAAnD,yHAAA,OAAO,OAAc;AAC7B,mDAAkF;AAA1E,oHAAA,sBAAsB,OAAA;AAAE,kHAAA,oBAAoB,OAAA;AACpD,iDAAmF;AAA3E,gHAAA,mBAAmB,OAAA;AAAE,sHAAA,yBAAyB,OAAA;AACtD,6DAAqD;AAA7C,6GAAA,UAAU,OAAA;AAClB,qDAI+B;AAH7B,+GAAA,gBAAgB,OAAA;AAChB,2GAAA,YAAY,OAAA;AACZ,sHAAA,uBAAuB,OAAA;AAIzB,4BAA4B;AAC5B,6EAAmE;AAA1D,yHAAA,cAAc,OAAA"}
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@@ -404,6 +404,10 @@ async function ohtReportMeasurementsExtractor(isReportPreview, exams, sourceFile
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continue;
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}
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const ohtBiomarker = biomarkers?.data?.items.find((bm) => bm.id === finalOhtBmId);
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// Used for error messages
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const bmInfo = ohtBiomarker?.acf?.shortName ?
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`name:${ohtBiomarker.acf.shortName}, bmId:${finalOhtBmId}, labKey:${transformedExamObj.labKey}` :
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`bmId:${finalOhtBmId}, labKey:${transformedExamObj.labKey}`;
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if (!ohtBiomarker) {
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processingLogger_service_1.processingLogger.addWarning(`Biomarker not found in API response for ohtBmId: ${finalOhtBmId}, labKey: ${transformedExamObj.labKey}, filename: ${(0, processingLogger_service_1.getRequestScopedFilename)(filename)}`, 'extract_measurements', {
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warningType: 'biomarker_not_found',
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@@ -414,14 +418,10 @@ async function ohtReportMeasurementsExtractor(isReportPreview, exams, sourceFile
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errorMessages.push({
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destination: { slack: true, notes: true, bi: true },
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message: `Biomarker not found for:[PLACEHOLDER]`,
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item:
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item: `${bmInfo}`
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});
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continue;
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}
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// Used for error messages
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const bmInfo = ohtBiomarker?.acf?.shortName ?
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`name:${ohtBiomarker.acf.shortName}, bmId:${finalOhtBmId}, labKey:${transformedExamObj.labKey}` :
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`bmId:${finalOhtBmId}, labKey:${transformedExamObj.labKey}`;
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// Determine effective biomarker compatibility, combining ACF
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// with reportCustomisation rules when present.
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const effectiveCompatibility = (0, extractionUtils_1.getEffectiveBiomarkerCompatibility)(ohtBiomarker, partnerPanelCustomization, partnerReportCustomization);
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@@ -449,7 +449,7 @@ async function ohtReportMeasurementsExtractor(isReportPreview, exams, sourceFile
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errorMessages.push({
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destination: { slack: true, notes: true, bi: true },
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message: `Unit not extracted correctly for:[PLACEHOLDER]`,
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item: `${bmInfo}`
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item: `${bmInfo}, unit:${unit}`
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});
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isMeasurementCorrectlyParsed = false;
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}
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@@ -487,7 +487,7 @@ async function ohtReportMeasurementsExtractor(isReportPreview, exams, sourceFile
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errorMessages.push({
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destination: { slack: true, notes: true, bi: true },
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message: `Value not extracted correctly for:[PLACEHOLDER]`,
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item: `${bmInfo}`
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item: `${bmInfo}, value:${numberValue}${unit}`
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});
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isMeasurementCorrectlyParsed = false;
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}
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@@ -1 +1 @@
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-
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1
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+
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@@ -10,9 +10,9 @@ import type { TransformationRule, ApplyRulesResult, ApplyRulesOptions, Validatio
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10
10
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* @param options - Optional configuration for rule application
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11
11
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* @param options.ohtReportJson - OHT Report/full document JSON (available as $report in expressions)
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12
12
|
* @param options.contextJson - Context JSON like patient info (available as $context in expressions)
|
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13
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-
* @returns Promise<ApplyRulesResult
|
|
13
|
+
* @returns Promise<ApplyRulesResult<TData>> - Result containing transformed data, applied rule IDs, and any errors
|
|
14
14
|
*/
|
|
15
|
-
export declare const applyRules: (rules: TransformationRule[], inputData:
|
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15
|
+
export declare const applyRules: <TData extends object = Record<string, unknown>>(rules: TransformationRule[], inputData: TData, options?: ApplyRulesOptions) => Promise<ApplyRulesResult<TData>>;
|
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16
16
|
/**
|
|
17
17
|
* Validate a JSONata expression
|
|
18
18
|
*
|
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@@ -99,9 +99,11 @@ const applyRule = async (rule, data, options = {}) => {
|
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|
99
99
|
* @param options - Optional configuration for rule application
|
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100
100
|
* @param options.ohtReportJson - OHT Report/full document JSON (available as $report in expressions)
|
|
101
101
|
* @param options.contextJson - Context JSON like patient info (available as $context in expressions)
|
|
102
|
-
* @returns Promise<ApplyRulesResult
|
|
102
|
+
* @returns Promise<ApplyRulesResult<TData>> - Result containing transformed data, applied rule IDs, and any errors
|
|
103
103
|
*/
|
|
104
104
|
const applyRules = async (rules, inputData, options = {}) => {
|
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105
|
+
// JSONata operates on plain Record<string, unknown> internally; TData is preserved for callers.
|
|
106
|
+
const record = inputData;
|
|
105
107
|
const result = await rules.reduce(async (accPromise, rule) => {
|
|
106
108
|
const acc = await accPromise;
|
|
107
109
|
try {
|
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@@ -136,7 +138,7 @@ const applyRules = async (rules, inputData, options = {}) => {
|
|
|
136
138
|
};
|
|
137
139
|
}
|
|
138
140
|
}, Promise.resolve({
|
|
139
|
-
data: { ...
|
|
141
|
+
data: { ...record },
|
|
140
142
|
appliedRules: [],
|
|
141
143
|
errors: [],
|
|
142
144
|
}));
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"transformationRules.service.js","sourceRoot":"","sources":["../../service/transformationRules.service.ts"],"names":[],"mappings":";;;;;;AAAA,sDAA8B;AAI9B,wEAEwC;AACxC,yEAA8D;AAE9D;;;;;;;GAOG;AAEH,MAAM,gBAAgB,GAAG,CAAC,cAAsB,EAAE,OAA8B,EAAE,EAAE;IAClF,MAAM,UAAU,GAAG,IAAA,iBAAO,EAAC,cAAc,CAAC,CAAC;IAC3C,UAAU,CAAC,MAAM,CAAC,QAAQ,EAAE,OAAO,CAAC,SAAS,CAAC,CAAC;IAC/C,UAAU,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,OAAO,CAAC,CAAC;IAC3C,UAAU,CAAC,MAAM,CAAC,SAAS,EAAE,OAAO,CAAC,OAAO,CAAC,CAAC;IAE9C,OAAO,UAAU,CAAC;AACpB,CAAC,CAAC;AAEF;;;;;;GAMG;AACH,MAAM,iBAAiB,GAAG,KAAK,EAAE,SAAiB,EAAE,OAA8B,EAAoB,EAAE;IACtG,IAAI,CAAC;QACH,IAAI,CAAC,SAAS,IAAI,SAAS,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC;YAC1C,OAAO,IAAI,CAAC;QACd,CAAC;QAED,MAAM,UAAU,GAAG,gBAAgB,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC;QACxD,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,QAAQ,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QAE1D,OAAO,OAAO,CAAC,MAAM,CAAC,CAAC;IACzB,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,2CAAgB,CAAC,QAAQ,CACvB,6BAA6B,EAC7B,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,SAAS,EAC1C,EAAE,SAAS,EAAE,CACd,CAAC;QACF,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC,CAAC;AAEF;;;;;;;GAOG;AACH,MAAM,uBAAuB,GAAG,KAAK,EAAE,eAAuB,EAAE,OAA8B,EAAoB,EAAE;IAClH,IAAI,CAAC;QACH,MAAM,UAAU,GAAG,gBAAgB,CAAC,eAAe,EAAE,OAAO,CAAC,CAAC;QAC9D,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,QAAQ,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QAC1D,OAAO,MAAM,CAAC;IAChB,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,2CAAgB,CAAC,QAAQ,CACvB,oCAAoC,EACpC,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,SAAS,EAC1C,EAAE,eAAe,EAAE,CACpB,CAAC;QACF,MAAM,KAAK,CAAC;IACd,CAAC;AACH,CAAC,CAAC;AAEF;;;;;;;GAOG;AACH,MAAM,SAAS,GAAG,KAAK,EACrB,IAAwB,EACxB,IAA6B,EAC7B,UAA6B,EAAE,EACG,EAAE;IACpC,MAAM,OAAO,GAA0B;QACrC,SAAS,EAAE,OAAO,CAAC,aAAa,IAAI,EAAE;QACtC,OAAO,EAAE,IAAI;QACb,OAAO,EAAE,OAAO,CAAC,WAAW,IAAI,EAAE;KACnC,CAAC;IAEF,MAAM,WAAW,GAAG,MAAM,iBAAiB,CAAC,IAAI,CAAC,mBAAmB,EAAE,OAAO,CAAC,CAAC;IAC/E,IAAI,CAAC,WAAW,EAAE,CAAC;QACjB,OAAO,IAAI,CAAC;IACd,CAAC;IAED,MAAM,QAAQ,GAAG,MAAM,uBAAuB,CAAC,IAAI,CAAC,eAAe,EAAE,OAAO,CAAC,CAAC;IAE9E,MAAM,eAAe,GAAG,EAAE,GAAG,IAAI,EAAE,CAAC;IAEpC,IAAI,IAAI,CAAC,gBAAgB,CAAC,UAAU,CAAC,IAAI,CAAC,EAAE,CAAC;QAC3C,MAAM,YAAY,GAAG,IAAA,+BAAS,EAAC,IAAI,CAAC,gBAAgB,CAAC,CAAC;QACtD,IAAA,oCAAc,EAAC,eAAe,EAAE,YAAY,EAAE,QAAQ,CAAC,CAAC;IAC1D,CAAC;IAED,OAAO,eAAe,CAAC;AACzB,CAAC,CAAC;AAEF;;;;;;;;;;;;GAYG;AACI,MAAM,UAAU,GAAG,KAAK,EAC7B,KAA2B,EAC3B,
|
|
1
|
+
{"version":3,"file":"transformationRules.service.js","sourceRoot":"","sources":["../../service/transformationRules.service.ts"],"names":[],"mappings":";;;;;;AAAA,sDAA8B;AAI9B,wEAEwC;AACxC,yEAA8D;AAE9D;;;;;;;GAOG;AAEH,MAAM,gBAAgB,GAAG,CAAC,cAAsB,EAAE,OAA8B,EAAE,EAAE;IAClF,MAAM,UAAU,GAAG,IAAA,iBAAO,EAAC,cAAc,CAAC,CAAC;IAC3C,UAAU,CAAC,MAAM,CAAC,QAAQ,EAAE,OAAO,CAAC,SAAS,CAAC,CAAC;IAC/C,UAAU,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,OAAO,CAAC,CAAC;IAC3C,UAAU,CAAC,MAAM,CAAC,SAAS,EAAE,OAAO,CAAC,OAAO,CAAC,CAAC;IAE9C,OAAO,UAAU,CAAC;AACpB,CAAC,CAAC;AAEF;;;;;;GAMG;AACH,MAAM,iBAAiB,GAAG,KAAK,EAAE,SAAiB,EAAE,OAA8B,EAAoB,EAAE;IACtG,IAAI,CAAC;QACH,IAAI,CAAC,SAAS,IAAI,SAAS,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC;YAC1C,OAAO,IAAI,CAAC;QACd,CAAC;QAED,MAAM,UAAU,GAAG,gBAAgB,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC;QACxD,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,QAAQ,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QAE1D,OAAO,OAAO,CAAC,MAAM,CAAC,CAAC;IACzB,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,2CAAgB,CAAC,QAAQ,CACvB,6BAA6B,EAC7B,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,SAAS,EAC1C,EAAE,SAAS,EAAE,CACd,CAAC;QACF,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC,CAAC;AAEF;;;;;;;GAOG;AACH,MAAM,uBAAuB,GAAG,KAAK,EAAE,eAAuB,EAAE,OAA8B,EAAoB,EAAE;IAClH,IAAI,CAAC;QACH,MAAM,UAAU,GAAG,gBAAgB,CAAC,eAAe,EAAE,OAAO,CAAC,CAAC;QAC9D,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,QAAQ,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QAC1D,OAAO,MAAM,CAAC;IAChB,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,2CAAgB,CAAC,QAAQ,CACvB,oCAAoC,EACpC,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,SAAS,EAC1C,EAAE,eAAe,EAAE,CACpB,CAAC;QACF,MAAM,KAAK,CAAC;IACd,CAAC;AACH,CAAC,CAAC;AAEF;;;;;;;GAOG;AACH,MAAM,SAAS,GAAG,KAAK,EACrB,IAAwB,EACxB,IAA6B,EAC7B,UAA6B,EAAE,EACG,EAAE;IACpC,MAAM,OAAO,GAA0B;QACrC,SAAS,EAAE,OAAO,CAAC,aAAa,IAAI,EAAE;QACtC,OAAO,EAAE,IAAI;QACb,OAAO,EAAE,OAAO,CAAC,WAAW,IAAI,EAAE;KACnC,CAAC;IAEF,MAAM,WAAW,GAAG,MAAM,iBAAiB,CAAC,IAAI,CAAC,mBAAmB,EAAE,OAAO,CAAC,CAAC;IAC/E,IAAI,CAAC,WAAW,EAAE,CAAC;QACjB,OAAO,IAAI,CAAC;IACd,CAAC;IAED,MAAM,QAAQ,GAAG,MAAM,uBAAuB,CAAC,IAAI,CAAC,eAAe,EAAE,OAAO,CAAC,CAAC;IAE9E,MAAM,eAAe,GAAG,EAAE,GAAG,IAAI,EAAE,CAAC;IAEpC,IAAI,IAAI,CAAC,gBAAgB,CAAC,UAAU,CAAC,IAAI,CAAC,EAAE,CAAC;QAC3C,MAAM,YAAY,GAAG,IAAA,+BAAS,EAAC,IAAI,CAAC,gBAAgB,CAAC,CAAC;QACtD,IAAA,oCAAc,EAAC,eAAe,EAAE,YAAY,EAAE,QAAQ,CAAC,CAAC;IAC1D,CAAC;IAED,OAAO,eAAe,CAAC;AACzB,CAAC,CAAC;AAEF;;;;;;;;;;;;GAYG;AACI,MAAM,UAAU,GAAG,KAAK,EAC7B,KAA2B,EAC3B,SAAgB,EAChB,UAA6B,EAAE,EACG,EAAE;IACpC,gGAAgG;IAChG,MAAM,MAAM,GAAG,SAA+C,CAAC;IAE/D,MAAM,MAAM,GAAG,MAAM,KAAK,CAAC,MAAM,CAC/B,KAAK,EAAE,UAAU,EAAE,IAAI,EAAE,EAAE;QACzB,MAAM,GAAG,GAAG,MAAM,UAAU,CAAC;QAE7B,IAAI,CAAC;YACH,MAAM,OAAO,GAA0B;gBACrC,SAAS,EAAE,OAAO,CAAC,aAAa,IAAI,EAAE;gBACtC,OAAO,EAAE,GAAG,CAAC,IAAI;gBACjB,OAAO,EAAE,OAAO,CAAC,WAAW,IAAI,EAAE;aACnC,CAAC;YAEF,MAAM,WAAW,GAAG,MAAM,iBAAiB,CAAC,IAAI,CAAC,mBAAmB,EAAE,OAAO,CAAC,CAAC;YAC/E,IAAI,WAAW,EAAE,CAAC;gBAChB,MAAM,eAAe,GAAG,MAAM,SAAS,CAAC,IAAI,EAAE,GAAG,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;gBAEjE,OAAO;oBACL,IAAI,EAAE,eAAe;oBACrB,YAAY,EAAE,CAAC,GAAG,GAAG,CAAC,YAAY,EAAE,IAAI,CAAC,EAAE,CAAC;oBAC5C,MAAM,EAAE,GAAG,CAAC,MAAM;iBACnB,CAAC;YACJ,CAAC;YAED,OAAO,GAAG,CAAC;QACb,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,OAAO;gBACL,IAAI,EAAE,GAAG,CAAC,IAAI;gBACd,YAAY,EAAE,GAAG,CAAC,YAAY;gBAC9B,MAAM,EAAE;oBACN,GAAG,GAAG,CAAC,MAAM;oBACb;wBACE,MAAM,EAAE,IAAI,CAAC,EAAE;wBACf,QAAQ,EAAE,IAAI,CAAC,IAAI;wBACnB,KAAK,EAAE,IAAA,qCAAe,EAAC,KAAK,CAAC;qBAC9B;iBACF;aACF,CAAC;QACJ,CAAC;IACH,CAAC,EACD,OAAO,CAAC,OAAO,CAAC;QACd,IAAI,EAAE,EAAE,GAAG,MAAM,EAAE;QACnB,YAAY,EAAE,EAAc;QAC5B,MAAM,EAAE,EAAgE;KACzE,CAAC,CACH,CAAC;IAEF,8DAA8D;IAC9D,IAAI,MAAM,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC7B,OAAO;YACL,OAAO,EAAE,KAAK;YACd,IAAI,EAAE,SAAS;YACf,YAAY,EAAE,EAAE;YAChB,MAAM,EAAE,MAAM,CAAC,MAAM;SACtB,CAAC;IACJ,CAAC;IAED,OAAO;QACL,OAAO,EAAE,IAAI;QACb,IAAI,EAAE,MAAM,CAAC,IAAwB;QACrC,YAAY,EAAE,MAAM,CAAC,YAAY;QACjC,MAAM,EAAE,EAAE;KACX,CAAC;AACJ,CAAC,CAAC;AArEW,QAAA,UAAU,cAqErB;AAEF;;;;;GAKG;AACI,MAAM,yBAAyB,GAAG,CAAC,UAAkB,EAAoB,EAAE;IAChF,IAAI,CAAC;QACH,IAAI,CAAC,UAAU,IAAI,UAAU,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC;YAC5C,OAAO,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;QACzB,CAAC;QAED,IAAA,iBAAO,EAAC,UAAU,CAAC,CAAC;QACpB,OAAO,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;IACzB,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,OAAO;YACL,KAAK,EAAE,KAAK;YACZ,KAAK,EAAE,IAAA,qCAAe,EAAC,KAAK,CAAC;SAC9B,CAAC;IACJ,CAAC;AACH,CAAC,CAAC;AAdW,QAAA,yBAAyB,6BAcpC"}
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@@ -207,6 +207,7 @@ export interface Exam {
|
|
|
207
207
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ohtExam: OhtExam;
|
|
208
208
|
originalExam: OriginalExam;
|
|
209
209
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}
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+
export type ExamKind = 'panel' | 'organism' | 'antibiogram' | 'quantitative' | 'qualitative';
|
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210
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|
export interface OhtExam {
|
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211
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labKey: string;
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212
213
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value: string;
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@@ -223,6 +224,8 @@ export interface OhtExam {
|
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223
224
|
examName: string;
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|
224
225
|
range: OhtRange[];
|
|
225
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|
annotation?: string;
|
|
227
|
+
examKind?: ExamKind;
|
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228
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+
subExams?: OhtExam[];
|
|
226
229
|
}
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|
227
230
|
export interface OhtRange {
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228
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|
from: string;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"oht.types.js","sourceRoot":"","sources":["../../types/oht.types.ts"],"names":[],"mappings":";;;
|
|
1
|
+
{"version":3,"file":"oht.types.js","sourceRoot":"","sources":["../../types/oht.types.ts"],"names":[],"mappings":";;;AA2VA,IAAY,GAIX;AAJD,WAAY,GAAG;IACb,oBAAa,CAAA;IACb,wBAAiB,CAAA;IACjB,sBAAe,CAAA;AACjB,CAAC,EAJW,GAAG,mBAAH,GAAG,QAId;AAED,IAAY,UAGX;AAHD,WAAY,UAAU;IACpB,qDAAuC,CAAA;IACvC,6BAAe,CAAA;AACjB,CAAC,EAHW,UAAU,0BAAV,UAAU,QAGrB;AAED,IAAY,0BAYX;AAZD,WAAY,0BAA0B;IACpC,mDAAqB,CAAA;IACrB,iDAAmB,CAAA;IACnB,uDAAyB,CAAA;IACzB,uDAAyB,CAAA;IACzB,qDAAuB,CAAA;IACvB,qDAAuB,CAAA;IACvB,6CAAe,CAAA;IACf,iDAAmB,CAAA;IACnB,mDAAqB,CAAA;IACrB,mDAAqB,CAAA;IACrB,2DAA6B,CAAA;AAC/B,CAAC,EAZW,0BAA0B,0CAA1B,0BAA0B,QAYrC;AAED,IAAY,kBAGX;AAHD,WAAY,kBAAkB;IAC5B,uDAAiC,CAAA;IACjC,6CAAuB,CAAA;AACzB,CAAC,EAHW,kBAAkB,kCAAlB,kBAAkB,QAG7B;AAED,IAAY,0BAIX;AAJD,WAAY,0BAA0B;IACpC,6CAAe,CAAA;IACf,2DAA6B,CAAA;IAC7B,qDAAuB,CAAA;AACzB,CAAC,EAJW,0BAA0B,0CAA1B,0BAA0B,QAIrC;AAED,IAAY,kBAOX;AAPD,WAAY,kBAAkB;IAC5B,yCAAmB,CAAA;IACnB,yCAAmB,CAAA;IACnB,+CAAyB,CAAA;IACzB,mCAAa,CAAA;IACb,qCAAe,CAAA;IACf,2CAAqB,CAAA;AACvB,CAAC,EAPW,kBAAkB,kCAAlB,kBAAkB,QAO7B;AAED,IAAY,YASX;AATD,WAAY,YAAY;IACtB,6CAA6B,CAAA;IAC7B,mDAAmC,CAAA;IACnC,yDAAyC,CAAA;IACzC,2DAA2C,CAAA;IAC3C,2DAA2C,CAAA;IAC3C,+DAA+C,CAAA;IAC/C,2DAA2C,CAAA;IAC3C,mDAAmC,CAAA;AACrC,CAAC,EATW,YAAY,4BAAZ,YAAY,QASvB;AAED,IAAY,YAoBX;AApBD,WAAY,YAAY;IACtB,mFAAmE,CAAA;IACnE,uDAAuC,CAAA;IACvC,+DAA+C,CAAA;IAC/C,mDAAmC,CAAA;IACnC,iEAAiD,CAAA;IACjD,uDAAuC,CAAA;IACvC,uDAAuC,CAAA;IACvC,6DAA6C,CAAA;IAC7C,2EAA2D,CAAA;IAC3D,2DAA2C,CAAA;IAC3C,uEAAuD,CAAA;IACvD,yDAAyC,CAAA;IACzC,uEAAuD,CAAA;IACvD,iEAAiD,CAAA;IACjD,oHAAoG,CAAA;IACpG,wFAAwF;IACxF,uEAAuD,CAAA;IACvD,gGAAgG;IAChG,6HAA6G,CAAA;AAC/G,CAAC,EApBW,YAAY,4BAAZ,YAAY,QAoBvB;AA0CD,IAAY,YAIX;AAJD,WAAY,YAAY;IACtB,+BAAe,CAAA;IACf,iCAAiB,CAAA;IACjB,2BAAW,CAAA;AACb,CAAC,EAJW,YAAY,4BAAZ,YAAY,QAIvB;AAsCD,IAAY,kBAIX;AAJD,WAAY,kBAAkB;IAC5B,6CAAuB,CAAA;IACvB,2CAAqB,CAAA;IACrB,uDAAiC,CAAA;AACnC,CAAC,EAJW,kBAAkB,kCAAlB,kBAAkB,QAI7B;AAED,IAAY,sBAOX;AAPD,WAAY,sBAAsB;IAChC,+CAAqB,CAAA;IACrB,+CAAqB,CAAA;IACrB,4EAAkD,CAAA;IAClD,4EAAkD,CAAA;IAClD,4DAAkC,CAAA;IAClC,2CAAiB,CAAA;AACnB,CAAC,EAPW,sBAAsB,sCAAtB,sBAAsB,QAOjC;AAED,IAAY,WAGX;AAHD,WAAY,WAAW;IACrB,wBAAS,CAAA;IACT,sCAAuB,CAAA;AACzB,CAAC,EAHW,WAAW,2BAAX,WAAW,QAGtB;AAED,IAAY,kCAGX;AAHD,WAAY,kCAAkC;IAC5C,6DAAuB,CAAA;IACvB,iEAA2B,CAAA;AAC7B,CAAC,EAHW,kCAAkC,kDAAlC,kCAAkC,QAG7C;AAED,IAAY,gCAMX;AAND,WAAY,gCAAgC;IAC1C,2DAAuB,CAAA;IACvB,6EAAyC,CAAA;IACzC,+EAA2C,CAAA;IAC3C,2FAAuD,CAAA;IACvD,uFAAmD,CAAA;AACrD,CAAC,EANW,gCAAgC,gDAAhC,gCAAgC,QAM3C"}
|
|
@@ -13,13 +13,13 @@ export interface TransformationRule {
|
|
|
13
13
|
sampleContextJson?: string;
|
|
14
14
|
}
|
|
15
15
|
export interface TransformationContext {
|
|
16
|
-
ohtReport:
|
|
16
|
+
ohtReport: object;
|
|
17
17
|
ohtExam: Record<string, unknown>;
|
|
18
|
-
context:
|
|
18
|
+
context: object;
|
|
19
19
|
}
|
|
20
|
-
export interface ApplyRulesResult {
|
|
20
|
+
export interface ApplyRulesResult<TData extends object = Record<string, unknown>> {
|
|
21
21
|
success: boolean;
|
|
22
|
-
data:
|
|
22
|
+
data: TData;
|
|
23
23
|
appliedRules: string[];
|
|
24
24
|
errors: Array<{
|
|
25
25
|
ruleId: string;
|
|
@@ -30,11 +30,11 @@ export interface ApplyRulesOptions {
|
|
|
30
30
|
/**
|
|
31
31
|
* The full/global document (OHT Report) accessible inside JSONata expressions via $report
|
|
32
32
|
*/
|
|
33
|
-
ohtReportJson?:
|
|
33
|
+
ohtReportJson?: object;
|
|
34
34
|
/**
|
|
35
35
|
* Additional context (e.g., patient info) accessible inside JSONata expressions via $context
|
|
36
36
|
*/
|
|
37
|
-
contextJson?:
|
|
37
|
+
contextJson?: object;
|
|
38
38
|
}
|
|
39
39
|
export interface ValidationResult {
|
|
40
40
|
valid: boolean;
|