@openhealth/oht-custom-parser-lib 0.5.24 → 0.5.26

package/dist/index.d.ts

@@ -18,5 +18,3 @@ export { default as pinoLogger } from './util-ts/pinoLogger';
 export { getGreaterThanPatterns, getLowerThanPatterns } from './util-ts/regexUtils';
 export { getMappedBiomarkers, getMappedBiomarkersLatest } from './util-ts/dataUtils';
 export { parseRange } from './util-ts/extractionUtils';
-export { lisCsvToExamRows, lisXmlToJson, } from './util-ts/mapperUtils';
-export type { LisCsvRow } from './util-ts/mapperUtils';

package/dist/index.js

@@ -4,7 +4,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.processingLogger = exports.mapErrorToRejectReason = exports.extractFormattedRejectReason = exports.shouldSendSlackNotification = exports.ValidationError = exports.handleError = exports.getRejectReason = exports.getErrorMessage = exports.ERROR_MESSAGES = exports.ERROR_CATALOG = exports.ErrorCode = exports.RejectReason = exports.UploadType = exports.Sex = exports.DataImportFileUploadStatus = exports.BiomarkerValueType = exports.MeasurementValueComparator = exports.DigitizationStatus = exports.PipelineStep = exports.ReferenceRangeType = exports.BiomarkerCompatibility = exports.ManualCheck = exports.AcfBiomarkerGenericDisclaimerLogic = exports.AcfBiomarkerRangeAnnotationCheck = exports.unitSynonyms = exports.validateTransformationRuleExpression = exports.applyTransformationRules = exports.generateBIMessages = exports.publishToTopic = exports.aggregateBiMessages = exports.aggregateMessages = exports.sendMessageToSlack = exports.getSlackFileIssueNotificationMessage = exports.extractValueFromGreaterLowerThan = exports.extractUnit = exports.getRangeFromPositionAndRegex = exports.parseExamValue = exports.extractReferenceAnnotation = exports.extractReferenceRanges = exports.checkValueForPlausibleValues = exports.ohtMeasurementsExtractor = exports.ohtReportMeasurementsExtractor = exports.postFileUploadSetStatus = exports.queryFileUploadsWithFilters = exports.handleRejection = exports.isPatientAgeValid = exports.parseGender = exports.parseExternalPatientId = exports.postReportPreviewToCore = exports.postDataImportFileUploadToCore = void 0;
-exports.lisXmlToJson = exports.lisCsvToExamRows = exports.parseRange = exports.getMappedBiomarkersLatest = exports.getMappedBiomarkers = exports.getLowerThanPatterns = exports.getGreaterThanPatterns = exports.pinoLogger = exports.uploadFileBufferToGCS = exports.readFileFromBucket = exports.applyFormat = exports.extractFromPath = exports.resolveUnitFromSynonyms = exports.fetchSynonymUnits = exports.processAppendedMappings = exports.isBiomarkerExternalNoVisualRange = exports.isBiomarkerValueNumerical = exports.extractValue = exports.parseErrorObj = exports.makeApiCallWithRetry = exports.runWithContextAsync = exports.runWithContext = exports.getRequestScopedFilename = exports.getRequestIdFromContext = void 0;
+exports.parseRange = exports.getMappedBiomarkersLatest = exports.getMappedBiomarkers = exports.getLowerThanPatterns = exports.getGreaterThanPatterns = exports.pinoLogger = exports.uploadFileBufferToGCS = exports.readFileFromBucket = exports.applyFormat = exports.extractFromPath = exports.resolveUnitFromSynonyms = exports.fetchSynonymUnits = exports.processAppendedMappings = exports.isBiomarkerExternalNoVisualRange = exports.isBiomarkerValueNumerical = exports.extractValue = exports.parseErrorObj = exports.makeApiCallWithRetry = exports.runWithContextAsync = exports.runWithContext = exports.getRequestScopedFilename = exports.getRequestIdFromContext = void 0;
 // ### SERVICES ###
 var reportCreator_service_1 = require("./service/reportCreator.service");
 Object.defineProperty(exports, "postDataImportFileUploadToCore", { enumerable: true, get: function () { return reportCreator_service_1.postDataImportFileUploadToCore; } });
@@ -100,7 +100,4 @@ Object.defineProperty(exports, "getMappedBiomarkers", { enumerable: true, get: f
 Object.defineProperty(exports, "getMappedBiomarkersLatest", { enumerable: true, get: function () { return dataUtils_2.getMappedBiomarkersLatest; } });
 var extractionUtils_1 = require("./util-ts/extractionUtils");
 Object.defineProperty(exports, "parseRange", { enumerable: true, get: function () { return extractionUtils_1.parseRange; } });
-var mapperUtils_1 = require("./util-ts/mapperUtils");
-Object.defineProperty(exports, "lisCsvToExamRows", { enumerable: true, get: function () { return mapperUtils_1.lisCsvToExamRows; } });
-Object.defineProperty(exports, "lisXmlToJson", { enumerable: true, get: function () { return mapperUtils_1.lisXmlToJson; } });
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/types/oht.types.d.ts

@@ -15,11 +15,15 @@ export interface OHTPartner {
     panelCustomisation?: PartnerCustomPanel;
     reportCustomisation?: ReportCustomisation;
     style: ReportStyleConfig[];
+    /** When enabled, reports for patients under 18 are accepted (age rejection is skipped). */
+    under18ReportConfig?: {
+        enabled?: boolean;
+    };
 }
-export type PartnerCustomization = {
+export interface PartnerCustomization {
     panelCustomisation?: PartnerCustomPanel;
     reportCustomisation?: ReportCustomisation;
-};
+}
 /**
  * Lightweight type describing report rules used by checkOhtBiomarkerCompatibility.
  *

package/dist/types/oht.types.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@openhealth/oht-custom-parser-lib",
-  "version": "0.5.24",
+  "version": "0.5.26",
   "description": "Shared nodejs lib with with reusable functions",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
@@ -18,23 +18,19 @@
     "@google-cloud/storage": "^7.7.0",
     "axios": "^1.13.2",
     "bottleneck": "^2.19.5",
-    "csv-parse": "^6.2.1",
     "dayjs": "^1.11.13",
     "dotenv": "^16.4.5",
     "jsonata": "^2.1.0",
     "moment": "^2.30.1",
     "mongodb": "^6.3.0",
     "pino": "^8.19.0",
-    "pino-pretty": "^11.3.0",
-    "xml2js": "^0.6.2"
+    "pino-pretty": "^11.3.0"
   },
   "devDependencies": {
     "@types/jest": "^29.5.14",
-    "@types/xml2js": "^0.4.14",
     "axios-mock-adapter": "^2.1.0",
     "jest": "^29.7.0",
     "ts-jest": "^29.2.5",
-    "tsx": "^4.19.2",
     "typescript": "^5.0.0"
   }
 }