@openhealth/oht-custom-parser-lib 0.5.14 → 0.5.16

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (30) hide show
  1. package/dist/index.d.ts +1 -1
  2. package/dist/index.js.map +1 -1
  3. package/dist/service/fileUploadErrorHandler.service.js +9 -3
  4. package/dist/service/fileUploadErrorHandler.service.js.map +1 -1
  5. package/dist/service/ohtMeasurementsExtractor.service.js +48 -14
  6. package/dist/service/ohtMeasurementsExtractor.service.js.map +1 -1
  7. package/dist/service/ohtReportMeasurementsExtractor.service.d.ts +7 -12
  8. package/dist/service/ohtReportMeasurementsExtractor.service.js +50 -36
  9. package/dist/service/ohtReportMeasurementsExtractor.service.js.map +1 -1
  10. package/dist/service/processingLogger.service.d.ts +24 -1
  11. package/dist/service/processingLogger.service.js +232 -22
  12. package/dist/service/processingLogger.service.js.map +1 -1
  13. package/dist/service/reportCreator.service.js +8 -3
  14. package/dist/service/reportCreator.service.js.map +1 -1
  15. package/dist/service/slackMessages.service.js +8 -1
  16. package/dist/service/slackMessages.service.js.map +1 -1
  17. package/dist/types/oht.types.d.ts +1 -44
  18. package/dist/types/oht.types.js.map +1 -1
  19. package/dist/util-ts/apiUtils.js +6 -1
  20. package/dist/util-ts/apiUtils.js.map +1 -1
  21. package/dist/util-ts/dataUtils.js +20 -5
  22. package/dist/util-ts/dataUtils.js.map +1 -1
  23. package/dist/util-ts/extractionUtils.d.ts +2 -34
  24. package/dist/util-ts/extractionUtils.js +15 -124
  25. package/dist/util-ts/extractionUtils.js.map +1 -1
  26. package/package.json +36 -36
  27. package/readme.md +115 -115
  28. package/dist/service/ohtAgnosticMeasurementsExtractor.service.d.ts +0 -59
  29. package/dist/service/ohtAgnosticMeasurementsExtractor.service.js +0 -603
  30. package/dist/service/ohtAgnosticMeasurementsExtractor.service.js.map +0 -1
package/dist/service/ohtReportMeasurementsExtractor.service.js.map CHANGED
@@ -1 +1 @@
1
- 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1
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package/dist/service/processingLogger.service.d.ts CHANGED
@@ -42,6 +42,19 @@ export interface StageDuration {
42
42
  durationMs?: number;
43
43
  cumulativeDurationMs?: number;
44
44
  }
45
+ export type WarningCategory = 'patient_data' | 'mapping' | 'measurements' | 'ingestion' | 'infrastructure' | 'general';
46
+ export type WarningSeverity = 'info' | 'degraded' | 'critical';
47
+ export type EventSeverity = 'info' | 'degraded' | 'critical';
48
+ export type ProcessingOutcome = 'success_no_warnings' | 'success_with_warnings' | 'degraded_success' | 'failure';
49
+ export type ImpactCategory = 'no_data' | 'partial_data' | 'full_data';
50
+ export type SlaBucket = 'fast' | 'normal' | 'slow' | 'very_slow';
51
+ export interface WarningOptions {
52
+ data?: Record<string, unknown>;
53
+ warningType?: string;
54
+ warningCategory?: WarningCategory;
55
+ warningSeverity?: WarningSeverity;
56
+ warningCode?: string;
57
+ }
45
58
  /**
46
59
  * Processing state interface - internal state tracking for the logger
47
60
  */
@@ -82,6 +95,10 @@ interface ProcessingState {
82
95
  step: string;
83
96
  timestamp: Date;
84
97
  data?: Record<string, unknown>;
98
+ warningType: string;
99
+ warningCategory: WarningCategory;
100
+ warningSeverity: WarningSeverity;
101
+ warningCode?: string;
85
102
  }>;
86
103
  success?: boolean;
87
104
  metadata?: Record<string, any>;
@@ -128,6 +145,12 @@ declare class ProcessingLoggerService {
128
145
  logDebug(message: string, data?: Record<string, unknown>): void;
129
146
  private startStage;
130
147
  private endStage;
148
+ private normalizeWarningOptions;
149
+ private inferWarningClassification;
150
+ private computeImpactCategory;
151
+ private computeSlaBucket;
152
+ private computeProcessingOutcome;
153
+ private computeEventSeverityFromOutcome;
131
154
  logStart(): void;
132
155
  logProgress(percentage: number, step: string): void;
133
156
  addMeasurement(count: number, type: string): void;
@@ -135,7 +158,7 @@ declare class ProcessingLoggerService {
135
158
  rejectReason?: string;
136
159
  errorCode?: string;
137
160
  }): void;
138
- addWarning(message: string, step: string, data?: Record<string, unknown>): void;
161
+ addWarning(message: string, step: string, dataOrOptions?: Record<string, unknown> | WarningOptions): void;
139
162
  private calculateStageDurations;
140
163
  private formatStageDurations;
141
164
  logEnd(success: boolean): void;
package/dist/service/processingLogger.service.js CHANGED
@@ -248,7 +248,18 @@ class ProcessingLoggerService {
248
248
  this.logger.warn(payload, message);
249
249
  }
250
250
  logError(message, error, data) {
251
- const base = { ...this.getLogContext(), ...data };
251
+ const base = {
252
+ ...this.getLogContext(),
253
+ ...data,
254
+ labels: {
255
+ function_name: this.getMutableState().isPreview ? 'AgnosticParserReport' : 'AgnosticParser',
256
+ partner_id: this.getMutableState().partnerId,
257
+ normalizer_name: this.getMutableState().normalizerName,
258
+ is_preview: String(this.getMutableState().isPreview),
259
+ event_type: 'error',
260
+ event_severity: 'critical',
261
+ },
262
+ };
252
263
  if (error) {
253
264
  this.logger.error({ ...base, err: error, error_message: error.message, stack: error.stack }, message);
254
265
  }
@@ -283,6 +294,149 @@ class ProcessingLoggerService {
283
294
  this.getMutableState().currentStageStartTime = undefined;
284
295
  this.getMutableState().currentStep = undefined;
285
296
  }
297
+ normalizeWarningOptions(maybeDataOrOptions) {
298
+ if (!maybeDataOrOptions) {
299
+ return {
300
+ ...this.inferWarningClassification('', ''),
301
+ data: undefined,
302
+ warningCode: undefined,
303
+ };
304
+ }
305
+ const maybeOptions = maybeDataOrOptions;
306
+ const hasClassificationFields = typeof maybeOptions.warningType === 'string' ||
307
+ typeof maybeOptions.warningCategory === 'string' ||
308
+ typeof maybeOptions.warningSeverity === 'string' ||
309
+ typeof maybeOptions.warningCode === 'string' ||
310
+ Object.prototype.hasOwnProperty.call(maybeOptions, 'data');
311
+ if (hasClassificationFields) {
312
+ return {
313
+ warningType: maybeOptions.warningType ?? 'generic_warning',
314
+ warningCategory: maybeOptions.warningCategory ?? 'general',
315
+ warningSeverity: maybeOptions.warningSeverity ?? 'info',
316
+ warningCode: maybeOptions.warningCode,
317
+ data: maybeOptions.data,
318
+ };
319
+ }
320
+ return {
321
+ ...this.inferWarningClassification('', ''),
322
+ data: maybeDataOrOptions,
323
+ warningCode: undefined,
324
+ };
325
+ }
326
+ inferWarningClassification(step, message) {
327
+ const stepLc = step.toLowerCase();
328
+ const msgLc = message.toLowerCase();
329
+ if (stepLc.includes('slack')) {
330
+ return {
331
+ warningType: 'slack_notification_failed',
332
+ warningCategory: 'infrastructure',
333
+ warningSeverity: 'degraded',
334
+ };
335
+ }
336
+ if (stepLc.includes('plausibility')) {
337
+ return {
338
+ warningType: 'plausibility_check_failed',
339
+ warningCategory: 'measurements',
340
+ warningSeverity: 'degraded',
341
+ };
342
+ }
343
+ if (msgLc.includes('externalpatientid')) {
344
+ return {
345
+ warningType: 'external_patient_id_missing',
346
+ warningCategory: 'patient_data',
347
+ warningSeverity: 'critical',
348
+ };
349
+ }
350
+ if (msgLc.includes('gender') || msgLc.includes('sex')) {
351
+ return {
352
+ warningType: 'patient_sex_missing',
353
+ warningCategory: 'patient_data',
354
+ warningSeverity: 'degraded',
355
+ };
356
+ }
357
+ if (msgLc.includes('birthdate') || msgLc.includes('age validation')) {
358
+ return {
359
+ warningType: 'patient_age_invalid',
360
+ warningCategory: 'patient_data',
361
+ warningSeverity: 'critical',
362
+ };
363
+ }
364
+ if (msgLc.includes('unmapped') || msgLc.includes('lab key')) {
365
+ return {
366
+ warningType: 'unmapped_lab_keys',
367
+ warningCategory: 'mapping',
368
+ warningSeverity: 'degraded',
369
+ };
370
+ }
371
+ if (stepLc.includes('extract_measurements') || msgLc.includes('no measurements')) {
372
+ return {
373
+ warningType: 'no_measurements_extracted',
374
+ warningCategory: 'measurements',
375
+ warningSeverity: 'degraded',
376
+ };
377
+ }
378
+ if (stepLc.includes('report_creator') || msgLc.includes('ingestion')) {
379
+ return {
380
+ warningType: 'oht_core_ingestion_rejected',
381
+ warningCategory: 'ingestion',
382
+ warningSeverity: 'critical',
383
+ };
384
+ }
385
+ if (stepLc.includes('api_call_retry')) {
386
+ return {
387
+ warningType: 'oht_core_api_error',
388
+ warningCategory: 'infrastructure',
389
+ warningSeverity: 'degraded',
390
+ };
391
+ }
392
+ return {
393
+ warningType: 'generic_warning',
394
+ warningCategory: 'general',
395
+ warningSeverity: 'info',
396
+ };
397
+ }
398
+ computeImpactCategory() {
399
+ const measurementsCount = this.getMutableState().measurementsCount || 0;
400
+ const unknownMeasurementsCount = this.getMutableState().unknownMeasurementsCount || 0;
401
+ const unknownUnitsCount = this.getMutableState().unknownUnitsCount || 0;
402
+ const unmappedLabKeysCount = this.getMutableState().unmappedLabKeysCount || 0;
403
+ if (measurementsCount === 0) {
404
+ return 'no_data';
405
+ }
406
+ if (unknownMeasurementsCount > 0 || unknownUnitsCount > 0 || unmappedLabKeysCount > 0) {
407
+ return 'partial_data';
408
+ }
409
+ return 'full_data';
410
+ }
411
+ computeSlaBucket(totalDurationMs) {
412
+ if (!totalDurationMs || totalDurationMs < 5000)
413
+ return 'fast';
414
+ if (totalDurationMs < 20000)
415
+ return 'normal';
416
+ if (totalDurationMs < 60000)
417
+ return 'slow';
418
+ return 'very_slow';
419
+ }
420
+ computeProcessingOutcome(success, impactCategory) {
421
+ if (!success)
422
+ return 'failure';
423
+ const hasWarnings = this.getMutableState().warnings.length > 0;
424
+ if (impactCategory !== 'full_data') {
425
+ return 'degraded_success';
426
+ }
427
+ if (hasWarnings) {
428
+ return 'success_with_warnings';
429
+ }
430
+ return 'success_no_warnings';
431
+ }
432
+ computeEventSeverityFromOutcome(processingOutcome) {
433
+ if (processingOutcome === 'failure')
434
+ return 'critical';
435
+ if (processingOutcome === 'degraded_success' || processingOutcome === 'success_with_warnings') {
436
+ return 'degraded';
437
+ }
438
+ return 'info';
439
+ }
286
440
  logStart() {
287
441
  this.getMutableState().startTime = new Date();
288
442
  const message = this.getMutableState().isPreview
@@ -343,7 +497,7 @@ class ProcessingLoggerService {
343
497
  is_preview: this.getMutableState().isPreview,
344
498
  report_preview_id: this.getMutableState().reportPreviewId,
345
499
  },
346
- }, `Processing progress: ${percentage}% - ${step}`);
500
+ }, 'Processing progress update');
347
501
  }
348
502
  addMeasurement(count, type) {
349
503
  switch (type) {
@@ -375,9 +529,29 @@ class ProcessingLoggerService {
375
529
  errorCode: metadata?.errorCode,
376
530
  });
377
531
  }
378
- addWarning(message, step, data) {
532
+ addWarning(message, step, dataOrOptions) {
379
533
  const timestamp = new Date();
380
- this.getMutableState().warnings.push({ message, step, timestamp, data });
534
+ const normalizedOptions = this.normalizeWarningOptions(dataOrOptions);
535
+ const inferredClassification = this.inferWarningClassification(step, message);
536
+ const warningType = normalizedOptions.warningType === 'generic_warning'
537
+ ? inferredClassification.warningType
538
+ : normalizedOptions.warningType;
539
+ const warningCategory = normalizedOptions.warningCategory === 'general'
540
+ ? inferredClassification.warningCategory
541
+ : normalizedOptions.warningCategory;
542
+ const warningSeverity = normalizedOptions.warningSeverity === 'info'
543
+ ? inferredClassification.warningSeverity
544
+ : normalizedOptions.warningSeverity;
545
+ this.getMutableState().warnings.push({
546
+ message,
547
+ step,
548
+ timestamp,
549
+ data: normalizedOptions.data,
550
+ warningType,
551
+ warningCategory,
552
+ warningSeverity,
553
+ warningCode: normalizedOptions.warningCode,
554
+ });
381
555
  // Emit one structured event per warning so log-based metrics can count/group all warnings,
382
556
  // not only the first warning from the final summary log.
383
557
  this.logger.warn({
@@ -385,11 +559,18 @@ class ProcessingLoggerService {
385
559
  message,
386
560
  step,
387
561
  timestamp: timestamp.toISOString(),
388
- ...(data && { data }),
562
+ warning_type: warningType,
563
+ warning_category: warningCategory,
564
+ warning_severity: warningSeverity,
565
+ ...(normalizedOptions.warningCode && { warning_code: normalizedOptions.warningCode }),
566
+ ...(normalizedOptions.data && { data: normalizedOptions.data }),
389
567
  },
390
- warning_message: message,
391
568
  warning_step: step,
392
- ...(data && { warning_data: data }),
569
+ warning_type: warningType,
570
+ warning_category: warningCategory,
571
+ warning_severity: warningSeverity,
572
+ ...(normalizedOptions.warningCode && { warning_code: normalizedOptions.warningCode }),
573
+ ...(normalizedOptions.data && { warning_data: normalizedOptions.data }),
393
574
  context: this.getLogContext(),
394
575
  labels: {
395
576
  function_name: this.getMutableState().isPreview ? 'AgnosticParserReport' : 'AgnosticParser',
@@ -397,8 +578,12 @@ class ProcessingLoggerService {
397
578
  normalizer_name: this.getMutableState().normalizerName,
398
579
  is_preview: String(this.getMutableState().isPreview),
399
580
  event_type: 'warning',
581
+ event_severity: warningSeverity,
582
+ warning_type: warningType,
583
+ warning_category: warningCategory,
584
+ warning_severity: warningSeverity,
400
585
  },
401
- }, `Processing warning: ${step}`);
586
+ }, 'Processing warning');
402
587
  }
403
588
  calculateStageDurations() {
404
589
  if (!this.getMutableState().totalDurationMs || this.getMutableState().totalDurationMs === 0)
@@ -489,34 +674,47 @@ class ProcessingLoggerService {
489
674
  typeof this.getMutableState().warnings[0].step === 'string'
490
675
  ? this.getMutableState().warnings[0].step
491
676
  : undefined;
492
- const primaryWarningMessage = this.getMutableState().warnings.length > 0 &&
493
- typeof this.getMutableState().warnings[0].message === 'string'
494
- ? this.getMutableState().warnings[0].message
677
+ const primaryWarningType = this.getMutableState().warnings.length > 0 &&
678
+ typeof this.getMutableState().warnings[0].warningType === 'string'
679
+ ? this.getMutableState().warnings[0].warningType
680
+ : undefined;
681
+ const primaryWarningCategory = this.getMutableState().warnings.length > 0 &&
682
+ typeof this.getMutableState().warnings[0].warningCategory === 'string'
683
+ ? this.getMutableState().warnings[0].warningCategory
684
+ : undefined;
685
+ const primaryWarningSeverity = this.getMutableState().warnings.length > 0 &&
686
+ typeof this.getMutableState().warnings[0].warningSeverity === 'string'
687
+ ? this.getMutableState().warnings[0].warningSeverity
495
688
  : undefined;
496
- const fileUploadId = this.getMutableState().fileUploadId;
497
- const fileName = this.getMutableState().fileName;
498
- const idSuffix = fileUploadId || fileName
499
- ? `, file_upload_id: ${fileUploadId ?? 'n/a'}, filename: ${fileName ?? 'n/a'}`
500
- : '';
689
+ const impactCategory = this.computeImpactCategory();
690
+ const slaBucket = this.computeSlaBucket(this.getMutableState().totalDurationMs);
691
+ const processingOutcome = this.computeProcessingOutcome(success, impactCategory);
692
+ const eventType = success ? 'success' : 'failure';
693
+ const eventSeverity = this.computeEventSeverityFromOutcome(processingOutcome);
501
694
  const message = this.getMutableState().isPreview
502
695
  ? success
503
- ? `Report preview processing completed${idSuffix}`
504
- : `Report preview processing failed${idSuffix}`
696
+ ? 'Report preview processing completed'
697
+ : 'Report preview processing failed'
505
698
  : success
506
- ? `Processing completed${idSuffix}`
507
- : `Processing failed${idSuffix}`;
699
+ ? 'Processing completed'
700
+ : 'Processing failed';
508
701
  const logMethod = success
509
702
  ? this.logger.info.bind(this.logger)
510
- : this.logger.warn.bind(this.logger);
703
+ : this.logger.error.bind(this.logger);
511
704
  logMethod({
512
705
  ...(failureReason && { failure_reason: failureReason }),
513
706
  ...(rejectReason && { reject_reason: rejectReason }),
514
707
  ...(primaryErrorType && { primary_error_type: primaryErrorType }),
515
708
  ...(primaryErrorCode && { primary_error_code: primaryErrorCode }),
516
709
  ...(primaryWarningStep && { primary_warning_step: primaryWarningStep }),
517
- ...(primaryWarningMessage && { primary_warning_message: primaryWarningMessage }),
710
+ ...(primaryWarningType && { primary_warning_type: primaryWarningType }),
711
+ ...(primaryWarningCategory && { primary_warning_category: primaryWarningCategory }),
712
+ ...(primaryWarningSeverity && { primary_warning_severity: primaryWarningSeverity }),
518
713
  processing_summary: {
519
714
  success,
715
+ processing_outcome: processingOutcome,
716
+ impact_category: impactCategory,
717
+ sla_bucket: slaBucket,
520
718
  total_duration_ms: this.getMutableState().totalDurationMs,
521
719
  measurements_count: this.getMutableState().measurementsCount || 0,
522
720
  unknown_measurements_count: this.getMutableState().unknownMeasurementsCount || 0,
@@ -544,16 +742,28 @@ class ProcessingLoggerService {
544
742
  is_preview: String(this.getMutableState().isPreview),
545
743
  report_preview_id: this.getMutableState().reportPreviewId,
546
744
  status: success ? 'success' : 'failed',
745
+ event_type: eventType,
746
+ event_severity: eventSeverity,
747
+ processing_outcome: processingOutcome,
748
+ impact_category: impactCategory,
749
+ sla_bucket: slaBucket,
547
750
  ...(rejectReason && { reject_reason: rejectReason }),
548
751
  ...(primaryErrorType && { primary_error_type: primaryErrorType }),
549
752
  ...(primaryErrorCode && { primary_error_code: primaryErrorCode }),
550
753
  ...(primaryWarningStep && { primary_warning_step: primaryWarningStep }),
754
+ ...(primaryWarningType && { primary_warning_type: primaryWarningType }),
755
+ ...(primaryWarningCategory && { primary_warning_category: primaryWarningCategory }),
756
+ ...(primaryWarningSeverity && { primary_warning_severity: primaryWarningSeverity }),
551
757
  },
552
758
  errors: errorsForPayload,
553
759
  warnings: this.getMutableState().warnings.length > 0
554
760
  ? this.getMutableState().warnings.map((w) => ({
555
761
  message: w.message,
556
762
  step: w.step,
763
+ warning_type: w.warningType,
764
+ warning_category: w.warningCategory,
765
+ warning_severity: w.warningSeverity,
766
+ ...(w.warningCode && { warning_code: w.warningCode }),
557
767
  timestamp: w.timestamp.toISOString(),
558
768
  ...(w.data && { data: w.data }),
559
769
  }))
package/dist/service/processingLogger.service.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/service/reportCreator.service.js CHANGED
@@ -159,9 +159,14 @@ async function postDataImportFileUploadToCore(dataImportFileUpload, unknownMeasu
159
159
  // - Trigger all notifications and webhooks
160
160
  if (!isReportParsedCorrectly || rejectedStatus !== undefined) {
161
161
  processingLogger_service_1.processingLogger.addWarning(`Report not parsed correctly fileUploadID ${dataImportFileUpload.id}, filename: ${filename}`, `report_creator`, {
162
- is_report_parsed_correctly: isReportParsedCorrectly,
163
- rejected_status: rejectedStatus,
164
- ingestion_response: ingestionResponse.data,
162
+ warningType: 'oht_core_ingestion_rejected',
163
+ warningCategory: 'ingestion',
164
+ warningSeverity: 'critical',
165
+ data: {
166
+ is_report_parsed_correctly: isReportParsedCorrectly,
167
+ rejected_status: rejectedStatus,
168
+ ingestion_response: ingestionResponse.data,
169
+ },
165
170
  });
166
171
  }
167
172
  // Return null since ingestion is asynchronous and we don't have the updated file upload object