@openhealth/oht-custom-parser-lib 0.3.3 → 0.3.4

package/dist/service/transformationRules.service.js

@@ -6,8 +6,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.validateJsonataExpression = exports.applyRules = void 0;
 const jsonata_1 = __importDefault(require("jsonata"));
 const transformationRules_1 = require("../util-ts/transformationRules");
-const pinoLogger_1 = __importDefault(require("../util-ts/pinoLogger"));
-const logger = (0, pinoLogger_1.default)();
+const processingLogger_service_1 = require("./processingLogger.service");
 /**
  * JSON Transformation Rules Engine
  *
@@ -40,10 +39,7 @@ const evaluateCondition = async (condition, context) => {
         return Boolean(result);
     }
     catch (error) {
-        logger.error({
-            error: error instanceof Error ? error.message : String(error),
-            condition,
-        }, 'Error evaluating condition.');
+        processingLogger_service_1.processingLogger.logError('Error evaluating condition.', error instanceof Error ? error : undefined, { condition });
         return false;
     }
 };
@@ -62,10 +58,7 @@ const evaluateValueExpression = async (valueExpression, context) => {
         return result;
     }
     catch (error) {
-        logger.error({
-            error: error instanceof Error ? error.message : String(error),
-            valueExpression,
-        }, 'Error evaluating value expression.');
+        processingLogger_service_1.processingLogger.logError('Error evaluating value expression.', error instanceof Error ? error : undefined, { valueExpression });
         throw error;
     }
 };

package/dist/service/transformationRules.service.js.map

@@ -1 +1 @@
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package/dist/types/error.types.d.ts

@@ -1,3 +1,4 @@
+import { RejectReason } from './oht.types';
 export interface Destination {
     slack: boolean;
     notes: boolean;
@@ -8,3 +9,84 @@ export interface ErrorMessage {
     message: string;
     item?: string;
 }
+/**
+ * Unified error codes for file-upload / parser / normalizer error handling.
+ * Coding: ERR_{DOMAIN}_{DESCRIPTION}
+ * - VAL = validation (context, payload, config, normalized data)
+ * - IO = file I/O, bucket
+ * - NORM = normalizer (fetch, execution, compile, selection)
+ * - UPLOAD = file upload handler (status, Slack, processing)
+ * - PARSE = parsing
+ */
+export declare enum ErrorCode {
+    VAL_MISSING_PAYLOAD = "ERR_VAL_MISSING_PAYLOAD",
+    VAL_MISSING_API_CONFIG = "ERR_VAL_MISSING_API_CONFIG",
+    VAL_MISSING_FILE_OR_BUCKET = "ERR_VAL_MISSING_FILE_OR_BUCKET",
+    VAL_INVALID_FILE_TYPE = "ERR_VAL_INVALID_FILE_TYPE",
+    VAL_NO_REPORTS_FOUND = "ERR_VAL_NO_REPORTS_FOUND",
+    VAL_MISSING_PARTNER_ID = "ERR_VAL_MISSING_PARTNER_ID",
+    VAL_INVALID_NORMALIZED_DATA = "ERR_VAL_INVALID_NORMALIZED_DATA",
+    VAL_INVALID_NORMALIZED_OBJECT = "ERR_VAL_INVALID_NORMALIZED_OBJECT",
+    VAL_INVALID_NORMALIZED_EXAMS = "ERR_VAL_INVALID_NORMALIZED_EXAMS",
+    IO_FILE_FETCH = "ERR_IO_FILE_FETCH",
+    NORM_FETCH = "ERR_NORM_FETCH",
+    NORM_EXECUTION = "ERR_NORM_EXECUTION",
+    NORM_FILE_NOT_FOUND = "ERR_NORM_FILE_NOT_FOUND",
+    NORM_NOT_COMPILED = "ERR_NORM_NOT_COMPILED",
+    NORM_UNSUPPORTED_FORCED = "ERR_NORM_UNSUPPORTED_FORCED",
+    NORM_UNSUPPORTED_DEFAULT = "ERR_NORM_UNSUPPORTED_DEFAULT",
+    NORM_RETURNED_NULL = "ERR_NORM_RETURNED_NULL",
+    UPLOAD_MISSING_SIGNED_UPLOAD_ID = "ERR_UPLOAD_MISSING_SIGNED_UPLOAD_ID",
+    UPLOAD_FILE_NOT_FOUND = "ERR_UPLOAD_FILE_NOT_FOUND",
+    UPLOAD_SLACK_FAILED = "ERR_UPLOAD_SLACK_FAILED",
+    UPLOAD_STATUS_UPDATE_FAILED = "ERR_UPLOAD_STATUS_UPDATE_FAILED",
+    UPLOAD_PROCESSING_FAILED = "ERR_UPLOAD_PROCESSING_FAILED",
+    UPLOAD_HANDLING_FAILED = "ERR_UPLOAD_HANDLING_FAILED",
+    UPLOAD_FILE_UPLOAD_ID_NOT_FOUND = "ERR_UPLOAD_FILE_UPLOAD_ID_NOT_FOUND",
+    PARSE_ERROR = "ERR_PARSE_ERROR",
+    UNHANDLED = "ERR_UNHANDLED"
+}
+export type ErrorCatalogEntry = {
+    /** Internal/log message. For client-facing explanation use rejectReason. */
+    message: string;
+    /**
+     * Client-facing explanation shown to the client (e.g. in file upload status).
+     * - Client/file problem: use a descriptive RejectReason (e.g. INVALID_DATA_NO_BIOMARKER_DATA).
+     * - Internal/system problem: use PROCESSING_COULD_NOT_BE_COMPLETED so we do not expose or blame our system.
+     */
+    rejectReason?: RejectReason;
+};
+/**
+ * Single source of truth: error code, message (internal), and rejectReason (client-facing).
+ * Use getErrorMessage() / getRejectReason() or ERROR_MESSAGES for backward compatibility.
+ */
+export declare const ERROR_CATALOG: Record<ErrorCode, ErrorCatalogEntry>;
+export declare function getErrorMessage(code: ErrorCode): string;
+export declare function getRejectReason(code: ErrorCode): RejectReason | undefined;
+/**
+ * Backward-compatible flat map: logical key -> message.
+ * Prefer getErrorMessage(ErrorCode.XXX) for new code.
+ */
+export declare const ERROR_MESSAGES: {
+    readonly MISSING_PAYLOAD: string;
+    readonly MISSING_API_CONFIG: string;
+    readonly MISSING_FILE_OR_BUCKET: string;
+    readonly INVALID_FILE_TYPE: string;
+    readonly FILE_FETCH_ERROR: string;
+    readonly NO_REPORTS_FOUND: string;
+    readonly NO_SIGNED_UPLOAD_ID: string;
+    readonly FILE_UPLOAD_ID_NOT_FOUND: string;
+    readonly NORMALIZER_FETCH_ERROR: string;
+    readonly NORMALIZER_EXECUTION_ERROR: string;
+    readonly MISSING_PARTNER_ID: string;
+    readonly INVALID_NORMALIZED_DATA: string;
+    readonly INVALID_NORMALIZED_DATA_OBJECT: string;
+    readonly INVALID_NORMALIZED_DATA_EXAMS: string;
+    readonly NORMALIZER_FILE_NOT_FOUND: string;
+    readonly NORMALIZER_NOT_COMPILED: string;
+    readonly UNSUPPORTED_FORCED_NORMALIZER: string;
+    readonly UNSUPPORTED_DEFAULT_NORMALIZER: string;
+    readonly NORMALIZER_RETURNED_NULL: string;
+    readonly PARSING_ERROR: string;
+    readonly UNHANDLED_ERROR: string;
+};

package/dist/types/error.types.js

@@ -1,3 +1,198 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.ERROR_MESSAGES = exports.ERROR_CATALOG = exports.ErrorCode = void 0;
+exports.getErrorMessage = getErrorMessage;
+exports.getRejectReason = getRejectReason;
+const oht_types_1 = require("./oht.types");
+/**
+ * Unified error codes for file-upload / parser / normalizer error handling.
+ * Coding: ERR_{DOMAIN}_{DESCRIPTION}
+ * - VAL = validation (context, payload, config, normalized data)
+ * - IO = file I/O, bucket
+ * - NORM = normalizer (fetch, execution, compile, selection)
+ * - UPLOAD = file upload handler (status, Slack, processing)
+ * - PARSE = parsing
+ */
+var ErrorCode;
+(function (ErrorCode) {
+    // Validation (context, payload, config)
+    ErrorCode["VAL_MISSING_PAYLOAD"] = "ERR_VAL_MISSING_PAYLOAD";
+    ErrorCode["VAL_MISSING_API_CONFIG"] = "ERR_VAL_MISSING_API_CONFIG";
+    ErrorCode["VAL_MISSING_FILE_OR_BUCKET"] = "ERR_VAL_MISSING_FILE_OR_BUCKET";
+    ErrorCode["VAL_INVALID_FILE_TYPE"] = "ERR_VAL_INVALID_FILE_TYPE";
+    ErrorCode["VAL_NO_REPORTS_FOUND"] = "ERR_VAL_NO_REPORTS_FOUND";
+    ErrorCode["VAL_MISSING_PARTNER_ID"] = "ERR_VAL_MISSING_PARTNER_ID";
+    ErrorCode["VAL_INVALID_NORMALIZED_DATA"] = "ERR_VAL_INVALID_NORMALIZED_DATA";
+    ErrorCode["VAL_INVALID_NORMALIZED_OBJECT"] = "ERR_VAL_INVALID_NORMALIZED_OBJECT";
+    ErrorCode["VAL_INVALID_NORMALIZED_EXAMS"] = "ERR_VAL_INVALID_NORMALIZED_EXAMS";
+    // I/O (file, bucket)
+    ErrorCode["IO_FILE_FETCH"] = "ERR_IO_FILE_FETCH";
+    // Normalizer
+    ErrorCode["NORM_FETCH"] = "ERR_NORM_FETCH";
+    ErrorCode["NORM_EXECUTION"] = "ERR_NORM_EXECUTION";
+    ErrorCode["NORM_FILE_NOT_FOUND"] = "ERR_NORM_FILE_NOT_FOUND";
+    ErrorCode["NORM_NOT_COMPILED"] = "ERR_NORM_NOT_COMPILED";
+    ErrorCode["NORM_UNSUPPORTED_FORCED"] = "ERR_NORM_UNSUPPORTED_FORCED";
+    ErrorCode["NORM_UNSUPPORTED_DEFAULT"] = "ERR_NORM_UNSUPPORTED_DEFAULT";
+    ErrorCode["NORM_RETURNED_NULL"] = "ERR_NORM_RETURNED_NULL";
+    // File upload handler
+    ErrorCode["UPLOAD_MISSING_SIGNED_UPLOAD_ID"] = "ERR_UPLOAD_MISSING_SIGNED_UPLOAD_ID";
+    ErrorCode["UPLOAD_FILE_NOT_FOUND"] = "ERR_UPLOAD_FILE_NOT_FOUND";
+    ErrorCode["UPLOAD_SLACK_FAILED"] = "ERR_UPLOAD_SLACK_FAILED";
+    ErrorCode["UPLOAD_STATUS_UPDATE_FAILED"] = "ERR_UPLOAD_STATUS_UPDATE_FAILED";
+    ErrorCode["UPLOAD_PROCESSING_FAILED"] = "ERR_UPLOAD_PROCESSING_FAILED";
+    ErrorCode["UPLOAD_HANDLING_FAILED"] = "ERR_UPLOAD_HANDLING_FAILED";
+    ErrorCode["UPLOAD_FILE_UPLOAD_ID_NOT_FOUND"] = "ERR_UPLOAD_FILE_UPLOAD_ID_NOT_FOUND";
+    // Parsing / generic
+    ErrorCode["PARSE_ERROR"] = "ERR_PARSE_ERROR";
+    ErrorCode["UNHANDLED"] = "ERR_UNHANDLED";
+})(ErrorCode || (exports.ErrorCode = ErrorCode = {}));
+/**
+ * Single source of truth: error code, message (internal), and rejectReason (client-facing).
+ * Use getErrorMessage() / getRejectReason() or ERROR_MESSAGES for backward compatibility.
+ */
+exports.ERROR_CATALOG = {
+    // --- Internal: config, payload, infra (generic client message) ---
+    [ErrorCode.VAL_MISSING_PAYLOAD]: {
+        message: "Couldn't parse the message payload.",
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+    },
+    [ErrorCode.VAL_MISSING_API_CONFIG]: {
+        message: 'Missing API key, core URL, or OHAPI URL.',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+    },
+    [ErrorCode.VAL_MISSING_FILE_OR_BUCKET]: {
+        message: 'File name or Bucket not present.',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+    },
+    [ErrorCode.VAL_MISSING_PARTNER_ID]: {
+        message: 'Missing partnerId in partnerConfig.',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+    },
+    // --- Client/file: descriptive ---
+    [ErrorCode.VAL_INVALID_FILE_TYPE]: {
+        message: 'File type not allowed.',
+        rejectReason: oht_types_1.RejectReason.UNSUPPORTED_UPLOAD,
+    },
+    [ErrorCode.VAL_NO_REPORTS_FOUND]: {
+        message: 'No reports found in this file.',
+        rejectReason: oht_types_1.RejectReason.INVALID_DATA_NO_BIOMARKER_DATA,
+    },
+    [ErrorCode.VAL_INVALID_NORMALIZED_DATA]: {
+        message: "Invalid normalized data structure: missing or invalid 'exams' array.",
+        rejectReason: oht_types_1.RejectReason.INVALID_DATA_NO_BIOMARKER_DATA,
+    },
+    [ErrorCode.VAL_INVALID_NORMALIZED_OBJECT]: {
+        message: 'Invalid normalized data structure: not an object',
+        rejectReason: oht_types_1.RejectReason.INVALID_DATA_NO_BIOMARKER_DATA,
+    },
+    [ErrorCode.VAL_INVALID_NORMALIZED_EXAMS]: {
+        message: 'Invalid normalized data structure: missing or invalid exams array',
+        rejectReason: oht_types_1.RejectReason.INVALID_DATA_NO_BIOMARKER_DATA,
+    },
+    // --- Internal: I/O, normalizer, upload handler (generic client message) ---
+    [ErrorCode.IO_FILE_FETCH]: {
+        message: 'Not possible to fetch file from bucket.',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+    },
+    [ErrorCode.NORM_FETCH]: {
+        message: 'Not possible to fetch normalizer from bucket.',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+    },
+    [ErrorCode.NORM_EXECUTION]: {
+        message: 'Error executing normalizer function.',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+    },
+    [ErrorCode.NORM_FILE_NOT_FOUND]: {
+        message: 'Local normalizer file not found for partner',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+    },
+    [ErrorCode.NORM_NOT_COMPILED]: {
+        message: 'Normalizer file not found in dist folder. Make sure to run build first.',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+    },
+    [ErrorCode.NORM_UNSUPPORTED_FORCED]: {
+        message: 'Unsupported forced normalizer',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+    },
+    [ErrorCode.NORM_UNSUPPORTED_DEFAULT]: {
+        message: 'Unsupported default normalizer',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+    },
+    [ErrorCode.NORM_RETURNED_NULL]: {
+        message: 'normalizer returned null or undefined data',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+    },
+    [ErrorCode.UPLOAD_MISSING_SIGNED_UPLOAD_ID]: {
+        message: 'No signedUpload id found for this upload.',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+    },
+    [ErrorCode.UPLOAD_FILE_NOT_FOUND]: {
+        message: 'File upload not found for signedUploadId.',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+    },
+    [ErrorCode.UPLOAD_FILE_UPLOAD_ID_NOT_FOUND]: {
+        message: 'No fileUploadId found for signedUploadId.',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+    },
+    [ErrorCode.UPLOAD_SLACK_FAILED]: {
+        message: 'Slack notification failed',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+    },
+    [ErrorCode.UPLOAD_STATUS_UPDATE_FAILED]: {
+        message: 'Failed to update file upload status',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+    },
+    [ErrorCode.UPLOAD_PROCESSING_FAILED]: {
+        message: 'Processing failed',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+    },
+    [ErrorCode.UPLOAD_HANDLING_FAILED]: {
+        message: 'Error handling failed',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+    },
+    // --- Client/file: parsing/format (descriptive) ---
+    [ErrorCode.PARSE_ERROR]: {
+        message: 'Error while parsing',
+        rejectReason: oht_types_1.RejectReason.INVALID_FILE_CONTENT,
+    },
+    // --- Internal: generic ---
+    [ErrorCode.UNHANDLED]: {
+        message: 'Unhandled error in main function',
+        rejectReason: oht_types_1.RejectReason.PROCESSING_COULD_NOT_BE_COMPLETED,
+    },
+};
+function getErrorMessage(code) {
+    return exports.ERROR_CATALOG[code].message;
+}
+function getRejectReason(code) {
+    return exports.ERROR_CATALOG[code].rejectReason;
+}
+/**
+ * Backward-compatible flat map: logical key -> message.
+ * Prefer getErrorMessage(ErrorCode.XXX) for new code.
+ */
+exports.ERROR_MESSAGES = {
+    MISSING_PAYLOAD: getErrorMessage(ErrorCode.VAL_MISSING_PAYLOAD),
+    MISSING_API_CONFIG: getErrorMessage(ErrorCode.VAL_MISSING_API_CONFIG),
+    MISSING_FILE_OR_BUCKET: getErrorMessage(ErrorCode.VAL_MISSING_FILE_OR_BUCKET),
+    INVALID_FILE_TYPE: getErrorMessage(ErrorCode.VAL_INVALID_FILE_TYPE),
+    FILE_FETCH_ERROR: getErrorMessage(ErrorCode.IO_FILE_FETCH),
+    NO_REPORTS_FOUND: getErrorMessage(ErrorCode.VAL_NO_REPORTS_FOUND),
+    NO_SIGNED_UPLOAD_ID: getErrorMessage(ErrorCode.UPLOAD_MISSING_SIGNED_UPLOAD_ID),
+    FILE_UPLOAD_ID_NOT_FOUND: getErrorMessage(ErrorCode.UPLOAD_FILE_UPLOAD_ID_NOT_FOUND),
+    NORMALIZER_FETCH_ERROR: getErrorMessage(ErrorCode.NORM_FETCH),
+    NORMALIZER_EXECUTION_ERROR: getErrorMessage(ErrorCode.NORM_EXECUTION),
+    MISSING_PARTNER_ID: getErrorMessage(ErrorCode.VAL_MISSING_PARTNER_ID),
+    INVALID_NORMALIZED_DATA: getErrorMessage(ErrorCode.VAL_INVALID_NORMALIZED_DATA),
+    INVALID_NORMALIZED_DATA_OBJECT: getErrorMessage(ErrorCode.VAL_INVALID_NORMALIZED_OBJECT),
+    INVALID_NORMALIZED_DATA_EXAMS: getErrorMessage(ErrorCode.VAL_INVALID_NORMALIZED_EXAMS),
+    NORMALIZER_FILE_NOT_FOUND: getErrorMessage(ErrorCode.NORM_FILE_NOT_FOUND),
+    NORMALIZER_NOT_COMPILED: getErrorMessage(ErrorCode.NORM_NOT_COMPILED),
+    UNSUPPORTED_FORCED_NORMALIZER: getErrorMessage(ErrorCode.NORM_UNSUPPORTED_FORCED),
+    UNSUPPORTED_DEFAULT_NORMALIZER: getErrorMessage(ErrorCode.NORM_UNSUPPORTED_DEFAULT),
+    NORMALIZER_RETURNED_NULL: getErrorMessage(ErrorCode.NORM_RETURNED_NULL),
+    PARSING_ERROR: getErrorMessage(ErrorCode.PARSE_ERROR),
+    UNHANDLED_ERROR: getErrorMessage(ErrorCode.UNHANDLED),
+};
 //# sourceMappingURL=error.types.js.map

package/dist/types/error.types.js.map

@@ -1 +1 @@
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package/dist/types/oht.types.d.ts

@@ -277,7 +277,11 @@ export declare enum RejectReason {
     UNSUPPORTED_UPLOAD = "Unsupported Upload",
     INCOMPLETE_DATA = "Incomplete Data (ie. missing units)",
     NOT_AN_OFFICIAL_REPORT = "Not An Official Report",
-    INVALID_DATA_FORMAT = "Invalid Data Format [expected: {expectedFormat}, received: {receivedFormat}]"
+    INVALID_DATA_FORMAT = "Invalid Data Format [expected: {expectedFormat}, received: {receivedFormat}]",
+    /** File could not be parsed or content is invalid (client-facing, no system detail). */
+    INVALID_FILE_CONTENT = "Invalid file content or format",
+    /** Generic client-facing message for internal/system failures. Do not expose system details. */
+    PROCESSING_COULD_NOT_BE_COMPLETED = "Processing could not be completed. Please try again or contact support."
 }
 export type Biomarker = {
     id: number;

package/dist/types/oht.types.js

@@ -74,6 +74,10 @@ var RejectReason;
     RejectReason["INCOMPLETE_DATA"] = "Incomplete Data (ie. missing units)";
     RejectReason["NOT_AN_OFFICIAL_REPORT"] = "Not An Official Report";
     RejectReason["INVALID_DATA_FORMAT"] = "Invalid Data Format [expected: {expectedFormat}, received: {receivedFormat}]";
+    /** File could not be parsed or content is invalid (client-facing, no system detail). */
+    RejectReason["INVALID_FILE_CONTENT"] = "Invalid file content or format";
+    /** Generic client-facing message for internal/system failures. Do not expose system details. */
+    RejectReason["PROCESSING_COULD_NOT_BE_COMPLETED"] = "Processing could not be completed. Please try again or contact support.";
 })(RejectReason || (exports.RejectReason = RejectReason = {}));
 var GoLiveStatus;
 (function (GoLiveStatus) {

package/dist/types/oht.types.js.map

@@ -1 +1 @@
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+{"version":3,"file":"oht.types.js","sourceRoot":"","sources":["../../types/oht.types.ts"],"names":[],"mappings":";;;AA+OA,IAAY,GAIX;AAJD,WAAY,GAAG;IACb,oBAAa,CAAA;IACb,wBAAiB,CAAA;IACjB,sBAAe,CAAA;AACjB,CAAC,EAJW,GAAG,mBAAH,GAAG,QAId;AAED,IAAY,UAGX;AAHD,WAAY,UAAU;IACpB,qDAAuC,CAAA;IACvC,6BAAe,CAAA;AACjB,CAAC,EAHW,UAAU,0BAAV,UAAU,QAGrB;AAED,IAAY,0BAYX;AAZD,WAAY,0BAA0B;IACpC,mDAAqB,CAAA;IACrB,iDAAmB,CAAA;IACnB,uDAAyB,CAAA;IACzB,uDAAyB,CAAA;IACzB,qDAAuB,CAAA;IACvB,qDAAuB,CAAA;IACvB,6CAAe,CAAA;IACf,iDAAmB,CAAA;IACnB,mDAAqB,CAAA;IACrB,mDAAqB,CAAA;IACrB,2DAA6B,CAAA;AAC/B,CAAC,EAZW,0BAA0B,0CAA1B,0BAA0B,QAYrC;AAED,IAAY,kBAGX;AAHD,WAAY,kBAAkB;IAC5B,uDAAiC,CAAA;IACjC,6CAAuB,CAAA;AACzB,CAAC,EAHW,kBAAkB,kCAAlB,kBAAkB,QAG7B;AAED,IAAY,0BAIX;AAJD,WAAY,0BAA0B;IACpC,6CAAe,CAAA;IACf,2DAA6B,CAAA;IAC7B,qDAAuB,CAAA;AACzB,CAAC,EAJW,0BAA0B,0CAA1B,0BAA0B,QAIrC;AAED,IAAY,kBAOX;AAPD,WAAY,kBAAkB;IAC5B,yCAAmB,CAAA;IACnB,yCAAmB,CAAA;IACnB,+CAAyB,CAAA;IACzB,mCAAa,CAAA;IACb,qCAAe,CAAA;IACf,2CAAqB,CAAA;AACvB,CAAC,EAPW,kBAAkB,kCAAlB,kBAAkB,QAO7B;AAED,IAAY,YASX;AATD,WAAY,YAAY;IACtB,6CAA6B,CAAA;IAC7B,mDAAmC,CAAA;IACnC,yDAAyC,CAAA;IACzC,2DAA2C,CAAA;IAC3C,2DAA2C,CAAA;IAC3C,+DAA+C,CAAA;IAC/C,2DAA2C,CAAA;IAC3C,mDAAmC,CAAA;AACrC,CAAC,EATW,YAAY,4BAAZ,YAAY,QASvB;AAED,IAAY,YAoBX;AApBD,WAAY,YAAY;IACtB,mFAAmE,CAAA;IACnE,uDAAuC,CAAA;IACvC,+DAA+C,CAAA;IAC/C,mDAAmC,CAAA;IACnC,iEAAiD,CAAA;IACjD,uDAAuC,CAAA;IACvC,uDAAuC,CAAA;IACvC,6DAA6C,CAAA;IAC7C,2EAA2D,CAAA;IAC3D,2DAA2C,CAAA;IAC3C,uEAAuD,CAAA;IACvD,yDAAyC,CAAA;IACzC,uEAAuD,CAAA;IACvD,iEAAiD,CAAA;IACjD,oHAAoG,CAAA;IACpG,wFAAwF;IACxF,uEAAuD,CAAA;IACvD,gGAAgG;IAChG,6HAA6G,CAAA;AAC/G,CAAC,EApBW,YAAY,4BAAZ,YAAY,QAoBvB;AA6CD,IAAY,YAIX;AAJD,WAAY,YAAY;IACtB,+BAAe,CAAA;IACf,iCAAiB,CAAA;IACjB,2BAAW,CAAA;AACb,CAAC,EAJW,YAAY,4BAAZ,YAAY,QAIvB;AAsCD,IAAY,kBAIX;AAJD,WAAY,kBAAkB;IAC5B,6CAAuB,CAAA;IACvB,2CAAqB,CAAA;IACrB,uDAAiC,CAAA;AACnC,CAAC,EAJW,kBAAkB,kCAAlB,kBAAkB,QAI7B;AAED,IAAY,sBAOX;AAPD,WAAY,sBAAsB;IAChC,+CAAqB,CAAA;IACrB,+CAAqB,CAAA;IACrB,4EAAkD,CAAA;IAClD,4EAAkD,CAAA;IAClD,4DAAkC,CAAA;IAClC,2CAAiB,CAAA;AACnB,CAAC,EAPW,sBAAsB,sCAAtB,sBAAsB,QAOjC;AAED,IAAY,WAGX;AAHD,WAAY,WAAW;IACrB,wBAAS,CAAA;IACT,sCAAuB,CAAA;AACzB,CAAC,EAHW,WAAW,2BAAX,WAAW,QAGtB;AAED,IAAY,kCAGX;AAHD,WAAY,kCAAkC;IAC5C,6DAAuB,CAAA;IACvB,iEAA2B,CAAA;AAC7B,CAAC,EAHW,kCAAkC,kDAAlC,kCAAkC,QAG7C;AAED,IAAY,gCAMX;AAND,WAAY,gCAAgC;IAC1C,2DAAuB,CAAA;IACvB,6EAAyC,CAAA;IACzC,+EAA2C,CAAA;IAC3C,2FAAuD,CAAA;IACvD,uFAAmD,CAAA;AACrD,CAAC,EANW,gCAAgC,gDAAhC,gCAAgC,QAM3C"}

package/dist/util-ts/apiUtils.js

@@ -8,8 +8,7 @@ exports.parseErrorObj = parseErrorObj;
 const https_1 = __importDefault(require("https"));
 const bottleneck_1 = __importDefault(require("bottleneck"));
 const axios_1 = __importDefault(require("axios"));
-const pinoLogger_1 = __importDefault(require("./pinoLogger"));
-const logger = (0, pinoLogger_1.default)();
+const processingLogger_service_1 = require("../service/processingLogger.service");
 const httpsAgent = new https_1.default.Agent({
     keepAlive: true, // Set keepAlive to true for persistent connections
     timeout: 60000, // Increase the timeout to 60 seconds
@@ -44,7 +43,7 @@ async function makeApiCallWithRetry(method, url, data, ohtCoreApiKey, retries =
             if (attempt === retries) {
                 throw error;
             }
-            logger.warn({ method, url }, `Attempt ${attempt} failed. Retrying...`);
+            processingLogger_service_1.processingLogger.logWarn(`Attempt ${attempt} failed. Retrying...`, { method, url });
         }
     }
 }

package/dist/util-ts/apiUtils.js.map

@@ -1 +1 @@
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package/dist/util-ts/dataUtils.js

@@ -1,7 +1,4 @@
 "use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.fetchSynonymUnits = exports.bulkCreateCustomParserUnknownUnits = exports.updatePartnerCustomParserUnmappedLabKeys = exports.getMappedBiomarkersLatest = exports.getMappedBiomarkers = exports.extractValue = void 0;
 exports.resolveUnitFromSynonyms = resolveUnitFromSynonyms;
@@ -13,8 +10,7 @@ exports.applyFormat = applyFormat;
 exports.isNumericalWithoutValidResult = isNumericalWithoutValidResult;
 const oht_types_1 = require("../types/oht.types");
 const apiUtils_1 = require("./apiUtils");
-const pinoLogger_1 = __importDefault(require("./pinoLogger"));
-const logger = (0, pinoLogger_1.default)();
+const processingLogger_service_1 = require("../service/processingLogger.service");
 /**
  * Normalize unit string for comparison (lowercase, remove spaces)
  */
@@ -108,7 +104,13 @@ const updatePartnerCustomParserUnmappedLabKeys = async (partnerId, unknownMeasur
         partnerId: partnerId,
         unmappedLabKeys: unknownMeasurementsBulk.unmappedlabkeys,
     }, ohtCoreApiKey);
-    logger.info(response.data, `Resp: POST /v1/customparser/partners/${partnerId}/unmapped/bulk`);
+    const unmappedData = response?.data;
+    processingLogger_service_1.processingLogger.logInfo(`Resp: POST /v1/customparser/partners/${partnerId}/unmapped/bulk`, {
+        partner_id: partnerId,
+        unmapped_count: unknownMeasurementsBulk.unmappedlabkeys?.length ?? 0,
+        http_status: response?.status,
+        response_message: typeof unmappedData?.message === 'string' ? unmappedData.message : undefined,
+    });
 };
 exports.updatePartnerCustomParserUnmappedLabKeys = updatePartnerCustomParserUnmappedLabKeys;
 // function that uses POST request at /v1/synonym/partners/{partnerId}/unknown-units/bulk to send the unknownUnits to the server
@@ -117,7 +119,13 @@ const bulkCreateCustomParserUnknownUnits = async (partnerId, unknownUnits, ohtCo
         partnerId: partnerId,
         unknownUnits: unknownUnits,
     }, ohtCoreApiKey);
-    logger.info(response.data, `Resp: POST /v1/synonym/partners/${partnerId}/unknown-units/bulk`);
+    const bulkData = response?.data;
+    processingLogger_service_1.processingLogger.logInfo(`Resp: POST /v1/synonym/partners/${partnerId}/unknown-units/bulk`, {
+        partner_id: partnerId,
+        unknown_units_count: unknownUnits?.length ?? 0,
+        http_status: response?.status,
+        response_message: typeof bulkData?.message === 'string' ? bulkData.message : undefined,
+    });
 };
 exports.bulkCreateCustomParserUnknownUnits = bulkCreateCustomParserUnknownUnits;
 /**
@@ -132,11 +140,11 @@ const fetchSynonymUnits = async (partnerId, ohtCoreApiKey) => {
         const synonymUnits = Array.isArray(response?.data)
             ? response.data
             : response?.data?.items || [];
-        logger.info({ partnerId, count: synonymUnits.length }, `Fetched ${synonymUnits.length} synonym units from API`);
+        processingLogger_service_1.processingLogger.logInfo(`Fetched ${synonymUnits.length} synonym units from API`, { partner_id: partnerId, count: synonymUnits.length });
         return synonymUnits;
     }
     catch (error) {
-        logger.warn({ partnerId, error: error.message }, `Failed to fetch synonym units from API, falling back to hardcoded synonyms`);
+        processingLogger_service_1.processingLogger.logWarn(`Failed to fetch synonym units from API, falling back to hardcoded synonyms`, { partner_id: partnerId, error: error.message });
         return [];
     }
 };
@@ -159,30 +167,30 @@ function processAppendedMappings(exams, labKeys, filename, annotationConfig) {
             extractedValues: []
         };
     }
-    logger.info(`Processing appended mapping with ${labKeys.length} additional labKeys. filename: ${filename}`);
+    processingLogger_service_1.processingLogger.logInfo(`Processing appended mapping with ${labKeys.length} additional labKeys. filename: ${filename}`);
     const allExtractedValues = [];
     const labKeyResults = [];
     for (const additionalLabKey of labKeys) {
-        logger.info(`Processing labKey: ${additionalLabKey.labKey}, filename: ${filename}`);
+        processingLogger_service_1.processingLogger.logInfo(`Processing labKey: ${additionalLabKey.labKey}, filename: ${filename}`);
         // First try: Find exam by direct labKey match
         let exam = exams.find(exam => exam?.labKey === additionalLabKey.labKey ||
             exam?.ohtExam?.labKey === additionalLabKey.labKey);
         let examData = null;
         if (exam) {
-            logger.info(`Found exam by direct labKey match for: ${additionalLabKey.labKey}`);
+            processingLogger_service_1.processingLogger.logInfo(`Found exam by direct labKey match for: ${additionalLabKey.labKey}`);
             // Use ohtExam data if available, otherwise use exam directly
             examData = exam.ohtExam || exam;
         }
         else {
-            logger.info(`Direct labKey not found, trying complex search for: ${additionalLabKey.labKey}`);
+            processingLogger_service_1.processingLogger.logInfo(`Direct labKey not found, trying complex search for: ${additionalLabKey.labKey}`);
             // Second try: labKey search for "labKeyFirstHalf:labKeySecondHalf" format
             examData = findExamByLabKey(exams, additionalLabKey.labKey);
             if (!examData) {
-                logger.warn(`Additional labKey ${additionalLabKey.labKey} not found for appended mapping, filename: ${filename}`);
+                processingLogger_service_1.processingLogger.logWarn(`Additional labKey ${additionalLabKey.labKey} not found for appended mapping, filename: ${filename}`);
                 continue;
             }
             else {
-                logger.info(`Found exam by complex search for: ${additionalLabKey.labKey}`);
+                processingLogger_service_1.processingLogger.logInfo(`Found exam by complex search for: ${additionalLabKey.labKey}`);
             }
         }
         const parts = [];
@@ -205,7 +213,7 @@ function processAppendedMappings(exams, labKeys, filename, annotationConfig) {
             });
             // Handle required paths - if required and no value, log warning and use fallback
             if (path.required && !rawValue && !path.defaultValue) {
-                logger.warn(`Required extraction path ${path.path} not found for labKey ${additionalLabKey.labKey}, filename: ${filename}`);
+                processingLogger_service_1.processingLogger.logWarn(`Required extraction path ${path.path} not found for labKey ${additionalLabKey.labKey}, filename: ${filename}`);
                 parts.push(`appended biomarker information for ${additionalLabKey.labKey} not found`);
             }
             else if (formatted) {

package/dist/util-ts/dataUtils.js.map

@@ -1 +1 @@
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