@openhealth/oht-custom-parser-lib 0.2.74 → 0.2.76

package/dist/service/ohtReportMeasurementsExtractor.service.js.map

@@ -0,0 +1 @@
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package/dist/types/custom-parser.types.d.ts

@@ -72,16 +72,24 @@ export interface OriginalExam {
 }
 export interface LabToOhtMapper {
     ohtBmId?: number;
+    biomarkerName?: string;
+    labKey?: string;
+    rawExam?: string;
     material?: string;
     method?: string;
+    collectionDate?: string;
+    effectiveDate?: string;
+    examCollectionDate?: string;
+    examEffectiveDate?: string;
     valueExtraction?: ValueExtraction;
     unitExtraction?: UnitExtraction;
     rangeExtraction?: RangeExtraction;
     referenceAsAnnotation?: ReferenceAsAnnotation;
     unknownMeasurement?: UnknownMeasurementExtraction;
     annotationConfig?: AnnotationConfig;
+    originalName?: string;
     originalExam?: OriginalExam;
-    ohtExam: OhtExam;
+    ohtExam?: OhtExam;
 }
 export interface LabToOhtContract {
     labToOhtList: LabToOhtMapper[];

package/dist/types/oht.types.d.ts

@@ -445,6 +445,9 @@ export interface BackendBiomarkerMapping {
     jsonBlob?: any;
     isIgnored?: boolean;
     keepAsUnmapped?: boolean;
+    /** Optional tagged LOINC code */
+    taggedLoincCode?: string;
+    /** all the following configurations will be deleted */
     /** Range extraction configuration */
     rangeExtraction: RangeExtractionConfig;
     /** Unit extraction configuration */
@@ -454,9 +457,7 @@ export interface BackendBiomarkerMapping {
     /** Reference as annotation configuration */
     referenceAsAnnotation: ReferenceAsAnnotationConfig;
     /** Annotation configuration for appended biomarkers */
-    annotationConfig?: AnnotationConfig;
-    /** Optional tagged LOINC code */
-    taggedLoincCode?: string;
+    annotationConfig: AnnotationConfig;
 }
 /** Custom parser transformation rules */
 export type TransformationRule = {

package/dist/util-ts/extractionUtils.d.ts

@@ -0,0 +1,69 @@
+import { RangeExtractionResponse, SynonymUnit } from "../types/custom-parser.types";
+import { AnnotationLabKey, BackendBiomarkerMapping, OhtExam, PatientInfo, Biomarker, BiomarkerValueType, MeasurementValueComparator, AnnotationConfig, Exam } from "../types/oht.types";
+/**
+ * Default range parsing function that extracts range information from exam data
+ * @param exam - The OHT exam object containing range information
+ * @param labToOhtMapper - The lab to OHT mapper configuration
+ * @returns Range extraction response with parsed range bounds
+ */
+declare function parseRange(exam: OhtExam, patientInfo: PatientInfo): RangeExtractionResponse;
+/**
+* Converts backend biomarker id to know if it should be mapped or unmapped
+* @param backendMapping - The backend mapping configuration
+* @param labKey - The lab key identifier
+* @returns The final ohtBmId and annotationConfig
+*/
+declare function handleBiomarkerId(backendMapping: BackendBiomarkerMapping, labKey: string): {
+    ohtBmId: number;
+    annotationConfig: {
+        enabled: boolean;
+        labKeys: AnnotationLabKey[];
+    };
+};
+/**
+ * Extracts unit from ohtExam (OhtExam object)
+ * @param ohtExam - OhtExam object (not a JSON string)
+ * @param ohtBiomarker - Biomarker information
+ * @param synonymUnits - Synonym units for unit resolution
+ * @param partnerId - Partner ID for synonym resolution
+ */
+declare function ohtReportExtractUnit(ohtExam: OhtExam, ohtBiomarker: Biomarker, synonymUnits: SynonymUnit[] | null, partnerId: string): {
+    unit: string;
+    isUnitParsedCorrectly: boolean;
+    originalUnit: string;
+    isArbitraryUnit: boolean;
+    unknownUnit: string;
+};
+/**
+ * Extracts reference annotation from ohtExam (OhtExam object)
+ * @param annotationConfig - Annotation configuration for appended biomarkers
+ * @param ohtExam - OhtExam object (not a JSON string)
+ * @param patientInfo - Patient information
+ * @param documentDate - Document date
+ * @param exams - Array of exams for appended mappings
+ * @param filename - Current filename being processed (for error reporting)
+ */
+declare function ohtReportExtractReferenceAnnotation(annotationConfig: AnnotationConfig | undefined, ohtExam: OhtExam, patientInfo: PatientInfo, documentDate: Date | undefined, exams: Exam[] | undefined, filename: string): string;
+/**
+ * Extracts reference ranges from ohtExam (OhtExam object)
+ * Always uses parseRange function from extractionUtils for range extraction
+ */
+declare function ohtReportExtractReferenceRanges(ohtExam: OhtExam, patientInfo: PatientInfo): RangeExtractionResponse;
+declare function ohtReportExtractValueFromGreaterLowerThan(value: string): {
+    extractedValue: number | null;
+    extractedValueComparator: MeasurementValueComparator | null;
+    valueParsedCorrectly: boolean;
+};
+/**
+ * Parses exam value from ohtExam (OhtExam object)
+ * Now uses value directly from ohtExam
+ */
+declare function ohtReportParseExamValue(ohtExam: OhtExam, ohtBiomarker: Biomarker): {
+    valueType: BiomarkerValueType;
+    alphanumericalValue: string | null;
+    numberValue: number | null;
+    valueComparator: MeasurementValueComparator;
+    isValueParsedCorrectly: boolean;
+};
+declare function ohtReportCheckValueForPlausibleValues(ohtBmId: number, labKey: string, ohtBiomarker: Biomarker, unit: string, value: number, isUnitParsedCorrectly: boolean, filename: string): boolean;
+export { parseRange, handleBiomarkerId, ohtReportExtractUnit, ohtReportExtractReferenceAnnotation, ohtReportExtractReferenceRanges, ohtReportExtractValueFromGreaterLowerThan, ohtReportParseExamValue, ohtReportCheckValueForPlausibleValues, };