@openhealth/oht-custom-parser-lib 0.2.65 → 0.2.67
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/service/auxiliaryFunctions.service.d.ts +9 -2
- package/dist/service/auxiliaryFunctions.service.js +75 -12
- package/dist/service/auxiliaryFunctions.service.js.map +1 -1
- package/dist/types/oht.types.d.ts +4 -0
- package/dist/types/oht.types.js +4 -0
- package/dist/types/oht.types.js.map +1 -1
- package/package.json +1 -1
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@@ -9,9 +9,17 @@ declare function parseGender(patientGender?: string): {
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sex: Sex;
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isGenderCorrectlyParsed: boolean;
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};
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/**
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* Maps parse type and error context to appropriate rejection reason
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* Uses a priority-based approach to ensure the most specific reason is selected
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*
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* @param parseType - The type of parsing that failed (e.g., "age", "exam date", "units")
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* @param errorMessages - Array to append error messages to
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* @returns Object containing rejectedStatus and rejectReason
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*/
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declare function handleRejection(parseType: string, errorMessages: ErrorMessage[]): {
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rejectedStatus: string;
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rejectReason: RejectReason
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rejectReason: RejectReason;
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};
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export interface FileUploadFilter {
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field: string;
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@@ -27,7 +35,6 @@ export interface DigitalizationUpdateFields {
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pipelineStep?: PipelineStep;
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pipelineStepPercentageCompleted?: number;
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pipelineStepData?: string;
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pipelineVersion?: string | Record<string, any>;
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timestamp?: string | dayjs.Dayjs;
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lastUpdated?: dayjs.Dayjs;
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}
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@@ -55,25 +55,91 @@ function parseGender(patientGender) {
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return { sex: oht_types_1.Sex.OTHER, isGenderCorrectlyParsed: false };
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}
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}
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/**
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* Maps parse type and error context to appropriate rejection reason
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* Uses a priority-based approach to ensure the most specific reason is selected
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*
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* @param parseType - The type of parsing that failed (e.g., "age", "exam date", "units")
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* @param errorMessages - Array to append error messages to
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* @returns Object containing rejectedStatus and rejectReason
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*/
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function handleRejection(parseType, errorMessages) {
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-
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// Map parseType to appropriate RejectReason
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// Default to INVALID_DATA_NO_BIOMARKER_DATA for parsing failures
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let rejectReason = oht_types_1.RejectReason.INVALID_DATA_NO_BIOMARKER_DATA;
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// Map specific parse types to more specific reject reasons if applicable
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const rejectedStatus = 'REJECTED';
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const lowerParseType = parseType.toLowerCase();
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-
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// Priority-based mapping: check most specific cases first
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let rejectReason;
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// Explicit handling for specific parse types used in structParser
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if (lowerParseType === 'patientage' || lowerParseType === 'patient age') {
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rejectReason = oht_types_1.RejectReason.UNDERAGE_PERSON;
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}
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else if (lowerParseType === 'patientexternalid' || lowerParseType === 'patient external id' || lowerParseType === 'patient externalid') {
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rejectReason = oht_types_1.RejectReason.MISSING_EXTERNAL_PATIENT_ID;
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}
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else if (lowerParseType === 'patientsex' || lowerParseType === 'patient sex') {
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rejectReason = oht_types_1.RejectReason.MISSING_PATIENT_SEX;
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}
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else if (lowerParseType.includes('birthdate') || lowerParseType.includes('birth date') || lowerParseType.includes('patient birthdate')) {
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rejectReason = oht_types_1.RejectReason.MISSING_PATIENT_BIRTHDATE;
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}
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else if (lowerParseType.includes('laborderid') || lowerParseType.includes('lab order id') || lowerParseType.includes('laborder')) {
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rejectReason = oht_types_1.RejectReason.MISSING_LAB_ORDER_ID;
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}
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// Age-related rejections (check before date to avoid false positives)
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// Matches: "age", "underage", "invalid age", "too young"
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else if (lowerParseType.includes('underage') ||
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(lowerParseType.includes('age') && (lowerParseType.includes('invalid') || lowerParseType.includes('too young')))) {
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rejectReason = oht_types_1.RejectReason.UNDERAGE_PERSON;
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}
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// Exam date specific (not birthdate or other dates)
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else if (lowerParseType.includes('exam date') ||
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(lowerParseType.includes('date') && lowerParseType.includes('exam'))) {
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rejectReason = oht_types_1.RejectReason.MISSING_EXAM_DATE;
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}
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-
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// Image quality issues
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else if (lowerParseType.includes('image quality') ||
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lowerParseType.includes('low quality') ||
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lowerParseType.includes('quality')) {
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rejectReason = oht_types_1.RejectReason.LOW_IMAGE_QUALITY;
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}
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// Language-related issues
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else if (lowerParseType.includes('language') ||
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lowerParseType.includes('unsupported language')) {
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rejectReason = oht_types_1.RejectReason.LANGUAGE_NOT_SUPPORTED;
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}
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// Biomarker-related issues (matches "biomarkers" or "biomarker" + "panel")
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else if (lowerParseType.includes('biomarker')) {
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rejectReason = oht_types_1.RejectReason.NO_IN_PANEL_BIOMARKER;
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}
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// Unit or incomplete data issues
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else if (lowerParseType.includes('unit') ||
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lowerParseType.includes('incomplete') ||
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lowerParseType.includes('missing data')) {
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rejectReason = oht_types_1.RejectReason.INCOMPLETE_DATA;
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}
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-
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// Format or unsupported upload issues
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else if (lowerParseType.includes('unsupported') ||
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lowerParseType.includes('format') ||
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lowerParseType.includes('not supported')) {
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rejectReason = oht_types_1.RejectReason.UNSUPPORTED_UPLOAD;
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}
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// Implausible data
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else if (lowerParseType.includes('implausible') ||
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lowerParseType.includes('invalid value') ||
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lowerParseType.includes('unreasonable')) {
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rejectReason = oht_types_1.RejectReason.IMPLAUSIBLE_DATA;
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}
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// Not an official report
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else if (lowerParseType.includes('not official') ||
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lowerParseType.includes('not an official')) {
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rejectReason = oht_types_1.RejectReason.NOT_AN_OFFICIAL_REPORT;
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}
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// Default: invalid data with no biomarker data
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else {
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rejectReason = oht_types_1.RejectReason.INVALID_DATA_NO_BIOMARKER_DATA;
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}
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errorMessages.push({
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destination: { slack: true, notes: false, bi: false },
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message: `File
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message: `File rejected: ${parseType} parsing failed. Reason: ${rejectReason}`,
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});
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return { rejectedStatus, rejectReason };
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}
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@@ -109,9 +175,6 @@ async function postFileUploadSetStatus(payload, fileUploadId, filename, ohtCoreA
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if (payload.digitalization.pipelineStepData !== undefined) {
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digitalization.pipelineStepData = payload.digitalization.pipelineStepData;
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}
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if (payload.digitalization.pipelineVersion !== undefined) {
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digitalization.pipelineVersion = payload.digitalization.pipelineVersion;
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}
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// Handle timestamp - convert dayjs to ISO string, or use provided string
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if (payload.digitalization.timestamp !== undefined) {
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digitalization.timestamp = typeof payload.digitalization.timestamp === 'string'
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"auxiliaryFunctions.service.js","sourceRoot":"","sources":["../../service/auxiliaryFunctions.service.ts"],"names":[],"mappings":";;;;;
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1
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+
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|
|
@@ -269,6 +269,10 @@ export declare enum RejectReason {
|
|
|
269
269
|
LANGUAGE_NOT_SUPPORTED = "Language Not Supported",
|
|
270
270
|
IMPLAUSIBLE_DATA = "(Implausible Data)",
|
|
271
271
|
MISSING_EXAM_DATE = "Missing Exam Date",
|
|
272
|
+
MISSING_LAB_ORDER_ID = "Missing Lab Order ID",
|
|
273
|
+
MISSING_EXTERNAL_PATIENT_ID = "Missing External Patient ID",
|
|
274
|
+
MISSING_PATIENT_SEX = "Missing Patient Sex",
|
|
275
|
+
MISSING_PATIENT_BIRTHDATE = "Missing Patient Birthdate",
|
|
272
276
|
UNSUPPORTED_UPLOAD = "Unsupported Upload",
|
|
273
277
|
INCOMPLETE_DATA = "Incomplete Data (ie. missing units)",
|
|
274
278
|
NOT_AN_OFFICIAL_REPORT = "Not An Official Report"
|
package/dist/types/oht.types.js
CHANGED
|
@@ -66,6 +66,10 @@ var RejectReason;
|
|
|
66
66
|
RejectReason["LANGUAGE_NOT_SUPPORTED"] = "Language Not Supported";
|
|
67
67
|
RejectReason["IMPLAUSIBLE_DATA"] = "(Implausible Data)";
|
|
68
68
|
RejectReason["MISSING_EXAM_DATE"] = "Missing Exam Date";
|
|
69
|
+
RejectReason["MISSING_LAB_ORDER_ID"] = "Missing Lab Order ID";
|
|
70
|
+
RejectReason["MISSING_EXTERNAL_PATIENT_ID"] = "Missing External Patient ID";
|
|
71
|
+
RejectReason["MISSING_PATIENT_SEX"] = "Missing Patient Sex";
|
|
72
|
+
RejectReason["MISSING_PATIENT_BIRTHDATE"] = "Missing Patient Birthdate";
|
|
69
73
|
RejectReason["UNSUPPORTED_UPLOAD"] = "Unsupported Upload";
|
|
70
74
|
RejectReason["INCOMPLETE_DATA"] = "Incomplete Data (ie. missing units)";
|
|
71
75
|
RejectReason["NOT_AN_OFFICIAL_REPORT"] = "Not An Official Report";
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"oht.types.js","sourceRoot":"","sources":["../../types/oht.types.ts"],"names":[],"mappings":";;;AA8OA,IAAY,GAIX;AAJD,WAAY,GAAG;IACb,oBAAa,CAAA;IACb,wBAAiB,CAAA;IACjB,sBAAe,CAAA;AACjB,CAAC,EAJW,GAAG,mBAAH,GAAG,QAId;AAED,IAAY,UAGX;AAHD,WAAY,UAAU;IACpB,qDAAuC,CAAA;IACvC,6BAAe,CAAA;AACjB,CAAC,EAHW,UAAU,0BAAV,UAAU,QAGrB;AAED,IAAY,0BAYX;AAZD,WAAY,0BAA0B;IACpC,mDAAqB,CAAA;IACrB,iDAAmB,CAAA;IACnB,uDAAyB,CAAA;IACzB,uDAAyB,CAAA;IACzB,qDAAuB,CAAA;IACvB,qDAAuB,CAAA;IACvB,6CAAe,CAAA;IACf,iDAAmB,CAAA;IACnB,mDAAqB,CAAA;IACrB,mDAAqB,CAAA;IACrB,2DAA6B,CAAA;AAC/B,CAAC,EAZW,0BAA0B,0CAA1B,0BAA0B,QAYrC;AAED,IAAY,kBAGX;AAHD,WAAY,kBAAkB;IAC5B,uDAAiC,CAAA;IACjC,6CAAuB,CAAA;AACzB,CAAC,EAHW,kBAAkB,kCAAlB,kBAAkB,QAG7B;AAED,IAAY,0BAIX;AAJD,WAAY,0BAA0B;IACpC,6CAAe,CAAA;IACf,2DAA6B,CAAA;IAC7B,qDAAuB,CAAA;AACzB,CAAC,EAJW,0BAA0B,0CAA1B,0BAA0B,QAIrC;AAED,IAAY,kBAOX;AAPD,WAAY,kBAAkB;IAC5B,yCAAmB,CAAA;IACnB,yCAAmB,CAAA;IACnB,+CAAyB,CAAA;IACzB,mCAAa,CAAA;IACb,qCAAe,CAAA;IACf,2CAAqB,CAAA;AACvB,CAAC,EAPW,kBAAkB,kCAAlB,kBAAkB,QAO7B;AAED,IAAY,YASX;AATD,WAAY,YAAY;IACtB,6CAA6B,CAAA;IAC7B,mDAAmC,CAAA;IACnC,yDAAyC,CAAA;IACzC,2DAA2C,CAAA;IAC3C,2DAA2C,CAAA;IAC3C,+DAA+C,CAAA;IAC/C,2DAA2C,CAAA;IAC3C,mDAAmC,CAAA;AACrC,CAAC,EATW,YAAY,4BAAZ,YAAY,QASvB;AAED,IAAY,
|
|
1
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+
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