@openhealth/oht-custom-parser-lib 0.2.56 → 0.2.58
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/service/auxiliaryFunctions.service.js +4 -1
- package/dist/service/auxiliaryFunctions.service.js.map +1 -1
- package/dist/service/ohtMeasurementsExtractor.service.js +2 -1
- package/dist/service/ohtMeasurementsExtractor.service.js.map +1 -1
- package/dist/types/custom-parser.types.d.ts +1 -1
- package/dist/util-ts/dataUtils.js +2 -1
- package/dist/util-ts/dataUtils.js.map +1 -1
- package/package.json +34 -34
- package/{README.md → readme.md} +99 -99
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@@ -25,7 +25,10 @@ const OHT_CORE_URL = process.env.OHT_CORE_URL;
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function getPatientAge(documentDate, patientBirthdate) {
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if (!patientBirthdate || !documentDate)
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return null;
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-
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+
// Normalize dates to start of day to avoid timezone issues
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+
const docDate = (0, moment_1.default)(documentDate).startOf('day');
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const birthDate = (0, moment_1.default)(patientBirthdate).startOf('day');
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return docDate.diff(birthDate, 'years');
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}
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function isPatientAgeValid(documentDate, patientBirthdate) {
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const patientAge = getPatientAge(documentDate, patientBirthdate);
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"auxiliaryFunctions.service.js","sourceRoot":"","sources":["../../service/auxiliaryFunctions.service.ts"],"names":[],"mappings":";;;;;
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1
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+
{"version":3,"file":"auxiliaryFunctions.service.js","sourceRoot":"","sources":["../../service/auxiliaryFunctions.service.ts"],"names":[],"mappings":";;;;;AAuKE,wDAAsB;AACtB,kCAAW;AACX,8CAAiB;AACjB,sCAAa;AACb,0CAAe;AACf,kEAA2B;AAC3B,0DAAuB;AACvB,sEAA6B;AA9K/B,2DAAmC;AAEnC,kDAAyD;AACzD,uEAA+C;AAC/C,kDAA+J;AAC/J,kDAA0B;AAC1B,uFAA+D;AAC/D,2DAAmC;AAInC,eAAK,CAAC,MAAM,CAAC,2BAAiB,CAAC,CAAC;AAChC,eAAK,CAAC,MAAM,CAAC,aAAG,CAAC,CAAC;AAElB,MAAM,MAAM,GAAG,IAAA,oBAAU,GAAE,CAAC;AAE5B,MAAM,YAAY,GAAG,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC;AAE9C,SAAS,aAAa,CAAC,YAAmB,EAAE,gBAAuB;IAC/D,IAAI,CAAC,gBAAgB,IAAI,CAAC,YAAY;QAAE,OAAO,IAAI,CAAC;IAEpD,2DAA2D;IAC3D,MAAM,OAAO,GAAG,IAAA,gBAAM,EAAC,YAAY,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC;IACpD,MAAM,SAAS,GAAG,IAAA,gBAAM,EAAC,gBAAgB,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC;IAE1D,OAAO,OAAO,CAAC,IAAI,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC;AAC5C,CAAC;AAED,SAAS,iBAAiB,CAAC,YAAmB,EAAE,gBAAuB;IACnE,MAAM,UAAU,GAAG,aAAa,CAAC,YAAY,EAAE,gBAAgB,CAAC,CAAC;IAEjE,IAAI,UAAU,KAAK,IAAI,EAAE,CAAC;QACtB,OAAO,KAAK,CAAC;IACjB,CAAC;IAED,OAAO,UAAU,IAAI,EAAE,IAAI,UAAU,IAAI,GAAG,CAAC;AACjD,CAAC;AAED,SAAS,sBAAsB,CAAC,iBAA0B;IACtD,OAAO,iBAAiB,KAAK,SAAS,IAAI,iBAAiB,CAAC,MAAM,GAAG,CAAC,CAAC;AAC3E,CAAC;AAED,SAAS,WAAW,CAAC,aAAsB;IACvC,MAAM,MAAM,GAAG,aAAa,EAAE,WAAW,EAAE,CAAC;IAE5C,QAAQ,MAAM,EAAE,CAAC;QACb,KAAK,GAAG,CAAC;QACT,KAAK,WAAW,CAAC;QACjB,KAAK,MAAM;YACP,OAAO,EAAE,GAAG,EAAE,eAAG,CAAC,IAAI,EAAE,uBAAuB,EAAE,IAAI,EAAE,CAAC;QAC5D,KAAK,GAAG,CAAC;QACT,KAAK,UAAU,CAAC;QAChB,KAAK,QAAQ;YACT,OAAO,EAAE,GAAG,EAAE,eAAG,CAAC,MAAM,EAAE,uBAAuB,EAAE,IAAI,EAAE,CAAC;QAC9D;YACI,OAAO,EAAE,GAAG,EAAE,eAAG,CAAC,KAAK,EAAE,uBAAuB,EAAE,KAAK,EAAE,CAAC;IAClE,CAAC;AACL,CAAC;AAED,SAAS,eAAe,CAAC,SAAiB,EAAE,aAA6B;IACrE,IAAI,cAAc,GAAG,UAAU,CAAC;IAChC,IAAI,YAAY,GAAG,mBAAmB,SAAS,EAAE,CAAC;IAElD,aAAa,CAAC,IAAI,CAAC;QACf,WAAW,EAAE,EAAC,KAAK,EAAE,IAAI,EAAE,KAAK,EAAE,KAAK,EAAE,EAAE,EAAE,KAAK,EAAC;QACnD,OAAO,EAAE,kBAAkB,SAAS,wBAAwB;KAC/D,CAAC,CAAC;IAEH,OAAO,EAAE,cAAc,EAAE,YAAY,EAAE,CAAA;AAC3C,CAAC;AAOD,KAAK,UAAU,2BAA2B,CAAC,OAA2B,EAAE,aAAqB;IACzF,MAAM,YAAY,GAAG,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC;IAC9C,MAAM,UAAU,GAAG,GAAG,YAAY,wBAAwB,CAAA;IAE1D,MAAM,SAAS,GAAG;QACd,SAAS,EAAE,CAAC,GAAG,OAAO,CAAC;KAC1B,CAAA;IAED,MAAM,aAAa,GAAG,MAAM,IAAA,+BAAoB,EAC9C,MAAM,EACN,UAAU,EACV,SAAS,EACT,aAAa,CACd,CAAC;IAEF,OAAO,aAAa,EAAE,IAAI,EAAE,KAAK,CAAA;AACrC,CAAC;AAED,KAAK,UAAU,uBAAuB,CACpC,OAAyG,EACzG,YAAoB,EACpB,QAAgB,EAChB,aAAqB;IAEnB,MAAM,YAAY,GAAG,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC;IAC9C,MAAM,6BAA6B,GAAG,GAAG,YAAY,+BAA+B,YAAY,EAAE,CAAC;IAEnG,MAAM,kBAAkB,GAAG,MAAM,IAAA,+BAAoB,EACnD,MAAM,EACN,6BAA6B,EAC7B,OAAO,EACP,aAAa,CACd,CAAC;IACF,MAAM,CAAC,IAAI,CACT,EAAE,IAAI,EAAE,kBAAkB,EAAE,IAAI,EAAE,EAClC,sBAAsB,OAAO,CAAC,MAAM,kBAAkB,YAAY,eAAe,QAAQ,EAAE,CAC5F,CAAC;IAEF,OAAO,kBAAkB,EAAE,IAAI,CAAC;AACpC,CAAC;AAED,uFAAuF;AACvF,KAAK,UAAU,6BAA6B,CAAC,SAAiB,EAAE,OAAiB,EAAE,aAAqB;IACpG,0CAA0C;IAC1C,MAAM,6BAA6B,GAAG,GAAG,YAAY,6BAA6B,SAAS,uBAAuB,CAAC;IACnH,MAAM,aAAa,GAAG,MAAM,IAAA,+BAAoB,EAAC,KAAK,EAAE,6BAA6B,EAAE,IAAI,EAAE,aAAa,CAAC,CAAC;IAE5G,MAAM,QAAQ,GAAI,CAAC,aAAa,EAAE,IAAI,EAAE,KAAK,IAAI,EAAE,CAA6B;SAC3E,MAAM,CAAC,CAAC,GAAG,EAAE,IAAI,EAAE,EAAE;QAClB,OAAO,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE;YACpB,EAAE,EAAE,IAAI,CAAC,EAAE;YACX,IAAI,EAAE,IAAI,CAAC,IAAI;YACf,WAAW,EAAE,IAAI,CAAC,WAAW;YAC7B,mBAAmB,EAAE,IAAI,CAAC,mBAAmB;YAC7C,eAAe,EAAE,IAAI,CAAC,eAAe;YACrC,gBAAgB,EAAE,IAAI,CAAC,gBAAgB;YACvC,IAAI,EAAE,EAAE;YACR,SAAS,EAAE,eAAK,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,MAAM,EAAE;YAC7C,SAAS,EAAE,eAAK,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,MAAM,EAAE;SAChD,CAAC,CAAC;IACP,CAAC,EAAE,IAAI,GAAG,EAA8B,CAAC,CAAC;IAE9C,kDAAkD;IAClD,MAAM,mCAAmC,GAAG,GAAG,YAAY,6BAA6B,SAAS,oCAAoC,CAAC;IACtI,MAAM,mBAAmB,GAAG,MAAM,IAAA,+BAAoB,EAAC,MAAM,EAAE,mCAAmC,EAAE;QAChG,OAAO,EAAE;YACL;gBACI,KAAK,EAAE,QAAQ;gBACf,WAAW,EAAE,OAAO;aACvB;SACJ;KACJ,EAAE,aAAa,CAAC,CAAC;IAElB,iDAAiD;IACjD,OAAQ,CAAC,mBAAmB,EAAE,IAAI,EAAE,KAAK,IAAI,EAAE,CAA+B;SACzE,MAAM,CAAC,CAAC,GAAG,EAAE,SAAgD,EAAE,EAAE;QAC9D,OAAO,GAAG,CAAC,GAAG,CAAC,SAAS,CAAC,MAAM,EAAE,SAAS,CAAC,OAAO;aAC7C,GAAG,CAAC,CAAC,MAAM,EAAE,EAAE;YACZ,MAAM,IAAI,GAAG,QAAQ,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;YAClC,IAAI,CAAC,IAAI,EAAE,CAAC;gBACR,MAAM,IAAI,KAAK,CAAC,+BAA+B,MAAM,eAAe,SAAS,CAAC,MAAM,0BAA0B,SAAS,GAAG,CAAC,CAAC;YAChI,CAAC;YAED,OAAO,IAAI,CAAC;QAChB,CAAC,CAAC;aACD,MAAM,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,KAAK,SAAS,CAAC,CACxC,CAAC;IACN,CAAC,EAAE,IAAI,GAAG,EAAgC,CAAC,CAAC;AACpD,CAAC"}
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@@ -218,7 +218,8 @@ function extractValueFromGreaterLowerThan(value) {
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}
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function parseExamValue(rawExamObj, valueExtraction, ohtBiomarker) {
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let value = (0, dataUtils_1.extractValue)(rawExamObj, valueExtraction?.valuePosition);
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-
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// try default extraction function or return the value as is
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value = valueExtraction?.extractionFunc ? valueExtraction?.extractionFunc(rawExamObj) : value;
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// If is parse float nan, the value is alphanumerical
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const valueType = (0, dataUtils_1.isBiomarkerValueNumerical)(ohtBiomarker)
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? oht_types_1.BiomarkerValueType.NUMERICAL
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@@ -1 +1 @@
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1
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-
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1
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+
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@@ -23,7 +23,7 @@ export interface UnknownUnits {
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23
23
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export declare const unitSynonyms: Record<string, string>;
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24
24
|
export interface ValueExtraction {
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|
25
25
|
valuePosition?: string;
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26
|
-
extractionFunc?: (exam: any, labToOhtMapper
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26
|
+
extractionFunc?: (exam: any, labToOhtMapper?: LabToOhtMapper) => ValueExtractionResponse;
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|
27
27
|
defaultValueExtractionFunc?: (value: string) => string | undefined;
|
|
28
28
|
}
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|
29
29
|
export interface ValueExtractionResponse {
|
|
@@ -311,7 +311,8 @@ function findObjectWithValue(obj, targetValue) {
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311
311
|
return false;
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312
312
|
// Check if any direct property has the target value
|
|
313
313
|
for (const key in obj) {
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314
|
-
|
|
314
|
+
const value = obj[key];
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315
|
+
if (typeof value === 'string' && value.trim() === targetValue.trim())
|
|
315
316
|
return true;
|
|
316
317
|
}
|
|
317
318
|
return false;
|
|
@@ -1 +1 @@
|
|
|
1
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-
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+
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package/package.json
CHANGED
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@@ -1,34 +1,34 @@
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1
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-
{
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2
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-
"name": "@openhealth/oht-custom-parser-lib",
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3
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-
"version": "0.2.
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|
4
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-
"description": "Shared nodejs lib with with reusable functions",
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|
5
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-
"main": "dist/index.js",
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|
6
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-
"types": "dist/index.d.ts",
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7
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-
"files": [
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8
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-
"/dist"
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|
9
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-
],
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|
10
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-
"scripts": {
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|
11
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-
"test": "jest"
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|
12
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-
},
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|
13
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-
"keywords": [],
|
|
14
|
-
"author": "",
|
|
15
|
-
"license": "ISC",
|
|
16
|
-
"dependencies": {
|
|
17
|
-
"@google-cloud/pubsub": "^4.10.0",
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"@google-cloud/storage": "^7.7.0",
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"axios": "^1.6.7",
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"bottleneck": "^2.19.5",
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"dayjs": "^1.11.13",
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"dotenv": "^16.4.5",
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"jsonata": "^2.1.0",
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"moment": "^2.30.1",
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{
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"name": "@openhealth/oht-custom-parser-lib",
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"version": "0.2.58",
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"description": "Shared nodejs lib with with reusable functions",
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"main": "dist/index.js",
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"types": "dist/index.d.ts",
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"files": [
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},
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"keywords": [],
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"author": "",
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"license": "ISC",
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"dependencies": {
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"@google-cloud/pubsub": "^4.10.0",
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"@google-cloud/storage": "^7.7.0",
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"axios": "^1.6.7",
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"bottleneck": "^2.19.5",
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"dayjs": "^1.11.13",
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"dotenv": "^16.4.5",
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"jsonata": "^2.1.0",
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"moment": "^2.30.1",
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"mongodb": "^6.3.0",
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"pino": "^8.19.0"
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},
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"devDependencies": {
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"@types/jest": "^29.5.14",
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"axios-mock-adapter": "^2.1.0",
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"jest": "^29.7.0",
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"ts-jest": "^29.2.5"
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}
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}
|
package/{README.md → readme.md}
RENAMED
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@@ -1,99 +1,99 @@
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# oht-custom-parser-lib
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`oht-custom-parser-lib` is a shared library designed for use across multiple Node.js cloud functions. It contains common MongoDB connectors and data utilities that can be reused to avoid code duplication and ensure consistency.
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## Table of Contents
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- [Publish to npm Registry](#publish-to-npm-registry)
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- [Using the Library in Cloud Functions](#using-the-library-in-cloud-functions)
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## Installation
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npm install oht-custom-parser-lib
|
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```bash
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## Usage
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After installing, you can import and use the library in your cloud functions:
|
|
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|
-
|
|
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|
-
```javascript
|
|
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|
-
const { connectToMongoDB } = require('oht-custom-parser-lib');
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|
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```
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|
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## Development
|
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|
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### Patch Versions
|
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|
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When making changes to the `oht-custom-parser-lib`, you need to update the version number before publishing. Follow these steps:
|
|
41
|
-
|
|
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|
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1. **Update the version number**: Use npm's version command to bump the version:
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|
43
|
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- **Patch** for bug fixes:
|
|
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|
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```bash
|
|
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|
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npm version patch
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-
```
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|
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- **Minor** for new features:
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```bash
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npm version minor
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```
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- **Major** for breaking changes:
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```bash
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npm version major
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-
```
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This command will automatically update the version in the `package.json` and create a git tag.
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|
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2. **Commit Changes**: Ensure your changes and the version bump are committed to the repository.
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|
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|
-
### Publish to npm Registry
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|
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62
|
-
After updating the version, you can publish the library to the npm registry:
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|
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|
-
|
|
64
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1. **Login to npm** (if you haven't already):
|
|
65
|
-
```bash
|
|
66
|
-
npm login
|
|
67
|
-
```
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|
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|
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```bash
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npm publish
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```
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If this is a private package, use:
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```bash
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npm publish --access restricted
|
|
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|
-
```
|
|
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|
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|
|
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3. **Verify the publish**: You can check the package on [npmjs.com](https://www.npmjs.com/) to verify that the new version is available.
|
|
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|
-
|
|
81
|
-
## Using the Library in Cloud Functions
|
|
82
|
-
|
|
83
|
-
To use `oht-custom-parser-lib` in your cloud functions:
|
|
84
|
-
|
|
85
|
-
1. **Install the Library**: Add `oht-custom-parser-lib` as a dependency in the cloud function's `package.json`:
|
|
86
|
-
|
|
87
|
-
```json
|
|
88
|
-
{
|
|
89
|
-
"dependencies": {
|
|
90
|
-
"oht-custom-parser-lib": "^1.0.0"
|
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|
-
}
|
|
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|
-
}
|
|
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-
```
|
|
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|
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|
|
95
|
-
Replace `^1.0.0` with the appropriate version as needed.
|
|
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|
-
|
|
97
|
-
2. **Install Dependencies**: Run `npm install` to install the library along with other dependencies.
|
|
98
|
-
|
|
99
|
-
3. **Deploy Your Function**: Deploy your cloud function as usual, ensuring that the updated dependencies are included.
|
|
1
|
+
# oht-custom-parser-lib
|
|
2
|
+
|
|
3
|
+
`oht-custom-parser-lib` is a shared library designed for use across multiple Node.js cloud functions. It contains common MongoDB connectors and data utilities that can be reused to avoid code duplication and ensure consistency.
|
|
4
|
+
|
|
5
|
+
## Table of Contents
|
|
6
|
+
|
|
7
|
+
- [Installation](#installation)
|
|
8
|
+
- [Usage](#usage)
|
|
9
|
+
- [Development](#development)
|
|
10
|
+
- [Patch Versions](#patch-versions)
|
|
11
|
+
- [Publish to npm Registry](#publish-to-npm-registry)
|
|
12
|
+
- [Using the Library in Cloud Functions](#using-the-library-in-cloud-functions)
|
|
13
|
+
|
|
14
|
+
## Installation
|
|
15
|
+
|
|
16
|
+
To install `oht-custom-parser-lib`, you can add it as a dependency in your project using npm:
|
|
17
|
+
|
|
18
|
+
```bash
|
|
19
|
+
npm install oht-custom-parser-lib
|
|
20
|
+
```
|
|
21
|
+
|
|
22
|
+
Or, if you want to install a specific version:
|
|
23
|
+
|
|
24
|
+
```bash
|
|
25
|
+
npm install oht-custom-parser-lib@<version>
|
|
26
|
+
```
|
|
27
|
+
|
|
28
|
+
## Usage
|
|
29
|
+
|
|
30
|
+
After installing, you can import and use the library in your cloud functions:
|
|
31
|
+
|
|
32
|
+
```javascript
|
|
33
|
+
const { connectToMongoDB } = require('oht-custom-parser-lib');
|
|
34
|
+
```
|
|
35
|
+
|
|
36
|
+
## Development
|
|
37
|
+
|
|
38
|
+
### Patch Versions
|
|
39
|
+
|
|
40
|
+
When making changes to the `oht-custom-parser-lib`, you need to update the version number before publishing. Follow these steps:
|
|
41
|
+
|
|
42
|
+
1. **Update the version number**: Use npm's version command to bump the version:
|
|
43
|
+
- **Patch** for bug fixes:
|
|
44
|
+
```bash
|
|
45
|
+
npm version patch
|
|
46
|
+
```
|
|
47
|
+
- **Minor** for new features:
|
|
48
|
+
```bash
|
|
49
|
+
npm version minor
|
|
50
|
+
```
|
|
51
|
+
- **Major** for breaking changes:
|
|
52
|
+
```bash
|
|
53
|
+
npm version major
|
|
54
|
+
```
|
|
55
|
+
|
|
56
|
+
This command will automatically update the version in the `package.json` and create a git tag.
|
|
57
|
+
|
|
58
|
+
2. **Commit Changes**: Ensure your changes and the version bump are committed to the repository.
|
|
59
|
+
|
|
60
|
+
### Publish to npm Registry
|
|
61
|
+
|
|
62
|
+
After updating the version, you can publish the library to the npm registry:
|
|
63
|
+
|
|
64
|
+
1. **Login to npm** (if you haven't already):
|
|
65
|
+
```bash
|
|
66
|
+
npm login
|
|
67
|
+
```
|
|
68
|
+
|
|
69
|
+
2. **Publish the package**:
|
|
70
|
+
```bash
|
|
71
|
+
npm publish
|
|
72
|
+
```
|
|
73
|
+
|
|
74
|
+
If this is a private package, use:
|
|
75
|
+
```bash
|
|
76
|
+
npm publish --access restricted
|
|
77
|
+
```
|
|
78
|
+
|
|
79
|
+
3. **Verify the publish**: You can check the package on [npmjs.com](https://www.npmjs.com/) to verify that the new version is available.
|
|
80
|
+
|
|
81
|
+
## Using the Library in Cloud Functions
|
|
82
|
+
|
|
83
|
+
To use `oht-custom-parser-lib` in your cloud functions:
|
|
84
|
+
|
|
85
|
+
1. **Install the Library**: Add `oht-custom-parser-lib` as a dependency in the cloud function's `package.json`:
|
|
86
|
+
|
|
87
|
+
```json
|
|
88
|
+
{
|
|
89
|
+
"dependencies": {
|
|
90
|
+
"oht-custom-parser-lib": "^1.0.0"
|
|
91
|
+
}
|
|
92
|
+
}
|
|
93
|
+
```
|
|
94
|
+
|
|
95
|
+
Replace `^1.0.0` with the appropriate version as needed.
|
|
96
|
+
|
|
97
|
+
2. **Install Dependencies**: Run `npm install` to install the library along with other dependencies.
|
|
98
|
+
|
|
99
|
+
3. **Deploy Your Function**: Deploy your cloud function as usual, ensuring that the updated dependencies are included.
|