@openhealth/oht-custom-parser-lib 0.2.50 → 0.2.53

package/dist/index.d.ts

@@ -3,11 +3,13 @@ export { parseExternalPatientId, parseGender, isPatientAgeValid, handleRejection
 export { ohtMeasurementsExtractor, checkValueForPlausibleValues, extractReferenceRanges, extractReferenceAnnotation, parseExamValue, getRangeFromPositionAndRegex, extractUnit, extractValueFromGreaterLowerThan } from './service/ohtMeasurementsExtractor.service';
 export { getSlackFileIssueNotificationMessage, sendMessageToSlack } from './service/slackMessages.service';
 export { aggregateMessages, aggregateBiMessages, publishToTopic, generateBIMessages } from './service/errorHandling.service';
-export { LabToOhtContract, LabToOhtMapper, UnknownMeasurementExtraction, ReferenceAsAnnotation, UnitExtraction, RangeExtraction, RangeExtractionResponse, ValueExtraction, unitSynonyms, ValueExtractionResponse, } from './types/custom-parser.types';
+export { applyRules as applyTransformationRules, validateJsonataExpression as validateTransformationRuleExpression, } from './service/transformationRules.service';
+export { LabToOhtContract, LabToOhtMapper, UnknownMeasurementExtraction, ReferenceAsAnnotation, UnitExtraction, RangeExtraction, RangeExtractionResponse, ValueExtraction, unitSynonyms, ValueExtractionResponse, SynonymUnit, UnknownUnits, } from './types/custom-parser.types';
 export { AcfBiomarkerRangeAnnotationCheck, AcfBiomarkerGenericDisclaimerLogic, ManualCheck, BiomarkerCompatibility, ReferenceRangeType, AcfReferenceRange, VisualRange, NameAlias, AlternativeUnit, BiomarkerAcf, Biomarker, PipelineStep, DigitizationStatus, MeasurementValueComparator, BiomarkerValueType, DataImportFileUploadStatus, Sex, Digitization, PatientInfo, UnknownMeasurement, Measurement, DataImportFileUpload, MessagePayload, SignedUpload, ReportStyleConfig, LanguageCode, BiomarkerCustomisation, PartnerCustomPanel, ReportDisplaySettings, ReportCustomisation, OHTPartner, UploadType, } from './types/oht.types';
 export { ErrorMessage } from './types/error.types';
+export type { TransformationRule, TransformationContext, ApplyRulesResult as TransformationApplyRulesResult, ApplyRulesOptions as TransformationApplyRulesOptions, ValidationResult as TransformationValidationResult, } from './types/transformationRules.types';
 export { makeApiCallWithRetry, parseErrorObj } from './util-ts/apiUtils';
-export { extractValue, isBiomarkerValueNumerical, isBiomarkerExternalNoVisualRange, processAppendedMappings } from './util-ts/dataUtils';
+export { extractValue, isBiomarkerValueNumerical, isBiomarkerExternalNoVisualRange, processAppendedMappings, fetchSynonymUnits, resolveUnitFromSynonyms } from './util-ts/dataUtils';
 export { readFileFromBucket, uploadFileBufferToGCS } from './util-ts/googleStorageUtils';
 export { default as pinoLogger } from './util-ts/pinoLogger';
 export { getGreaterThanPatterns, getLowerThanPatterns } from './util-ts/regexUtils';

package/dist/index.js

@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getMappedBiomarkers = exports.getLowerThanPatterns = exports.getGreaterThanPatterns = exports.pinoLogger = exports.uploadFileBufferToGCS = exports.readFileFromBucket = exports.processAppendedMappings = exports.isBiomarkerExternalNoVisualRange = exports.isBiomarkerValueNumerical = exports.extractValue = exports.parseErrorObj = exports.makeApiCallWithRetry = exports.UploadType = exports.Sex = exports.DataImportFileUploadStatus = exports.BiomarkerValueType = exports.MeasurementValueComparator = exports.DigitizationStatus = exports.PipelineStep = exports.ReferenceRangeType = exports.BiomarkerCompatibility = exports.ManualCheck = exports.AcfBiomarkerGenericDisclaimerLogic = exports.AcfBiomarkerRangeAnnotationCheck = exports.unitSynonyms = exports.generateBIMessages = exports.publishToTopic = exports.aggregateBiMessages = exports.aggregateMessages = exports.sendMessageToSlack = exports.getSlackFileIssueNotificationMessage = exports.extractValueFromGreaterLowerThan = exports.extractUnit = exports.getRangeFromPositionAndRegex = exports.parseExamValue = exports.extractReferenceAnnotation = exports.extractReferenceRanges = exports.checkValueForPlausibleValues = exports.ohtMeasurementsExtractor = exports.postFileUploadSetStatus = exports.queryFileUploadsWithFilters = exports.handleRejection = exports.isPatientAgeValid = exports.parseGender = exports.parseExternalPatientId = exports.postDataImportFileUploadToCore = void 0;
+exports.getMappedBiomarkers = exports.getLowerThanPatterns = exports.getGreaterThanPatterns = exports.pinoLogger = exports.uploadFileBufferToGCS = exports.readFileFromBucket = exports.resolveUnitFromSynonyms = exports.fetchSynonymUnits = exports.processAppendedMappings = exports.isBiomarkerExternalNoVisualRange = exports.isBiomarkerValueNumerical = exports.extractValue = exports.parseErrorObj = exports.makeApiCallWithRetry = exports.UploadType = exports.Sex = exports.DataImportFileUploadStatus = exports.BiomarkerValueType = exports.MeasurementValueComparator = exports.DigitizationStatus = exports.PipelineStep = exports.ReferenceRangeType = exports.BiomarkerCompatibility = exports.ManualCheck = exports.AcfBiomarkerGenericDisclaimerLogic = exports.AcfBiomarkerRangeAnnotationCheck = exports.unitSynonyms = exports.validateTransformationRuleExpression = exports.applyTransformationRules = exports.generateBIMessages = exports.publishToTopic = exports.aggregateBiMessages = exports.aggregateMessages = exports.sendMessageToSlack = exports.getSlackFileIssueNotificationMessage = exports.extractValueFromGreaterLowerThan = exports.extractUnit = exports.getRangeFromPositionAndRegex = exports.parseExamValue = exports.extractReferenceAnnotation = exports.extractReferenceRanges = exports.checkValueForPlausibleValues = exports.ohtMeasurementsExtractor = exports.postFileUploadSetStatus = exports.queryFileUploadsWithFilters = exports.handleRejection = exports.isPatientAgeValid = exports.parseGender = exports.parseExternalPatientId = exports.postDataImportFileUploadToCore = void 0;
 // ### SERVICES ###
 var reportCreator_service_1 = require("./service/reportCreator.service");
 Object.defineProperty(exports, "postDataImportFileUploadToCore", { enumerable: true, get: function () { return reportCreator_service_1.postDataImportFileUploadToCore; } });
@@ -31,6 +31,9 @@ Object.defineProperty(exports, "aggregateMessages", { enumerable: true, get: fun
 Object.defineProperty(exports, "aggregateBiMessages", { enumerable: true, get: function () { return errorHandling_service_1.aggregateBiMessages; } });
 Object.defineProperty(exports, "publishToTopic", { enumerable: true, get: function () { return errorHandling_service_1.publishToTopic; } });
 Object.defineProperty(exports, "generateBIMessages", { enumerable: true, get: function () { return errorHandling_service_1.generateBIMessages; } });
+var transformationRules_service_1 = require("./service/transformationRules.service");
+Object.defineProperty(exports, "applyTransformationRules", { enumerable: true, get: function () { return transformationRules_service_1.applyRules; } });
+Object.defineProperty(exports, "validateTransformationRuleExpression", { enumerable: true, get: function () { return transformationRules_service_1.validateJsonataExpression; } });
 // ### TYPES ###
 var custom_parser_types_1 = require("./types/custom-parser.types");
 Object.defineProperty(exports, "unitSynonyms", { enumerable: true, get: function () { return custom_parser_types_1.unitSynonyms; } });
@@ -56,6 +59,8 @@ Object.defineProperty(exports, "extractValue", { enumerable: true, get: function
 Object.defineProperty(exports, "isBiomarkerValueNumerical", { enumerable: true, get: function () { return dataUtils_1.isBiomarkerValueNumerical; } });
 Object.defineProperty(exports, "isBiomarkerExternalNoVisualRange", { enumerable: true, get: function () { return dataUtils_1.isBiomarkerExternalNoVisualRange; } });
 Object.defineProperty(exports, "processAppendedMappings", { enumerable: true, get: function () { return dataUtils_1.processAppendedMappings; } });
+Object.defineProperty(exports, "fetchSynonymUnits", { enumerable: true, get: function () { return dataUtils_1.fetchSynonymUnits; } });
+Object.defineProperty(exports, "resolveUnitFromSynonyms", { enumerable: true, get: function () { return dataUtils_1.resolveUnitFromSynonyms; } });
 var googleStorageUtils_1 = require("./util-ts/googleStorageUtils");
 Object.defineProperty(exports, "readFileFromBucket", { enumerable: true, get: function () { return googleStorageUtils_1.readFileFromBucket; } });
 Object.defineProperty(exports, "uploadFileBufferToGCS", { enumerable: true, get: function () { return googleStorageUtils_1.uploadFileBufferToGCS; } });

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../index.ts"],"names":[],"mappings":";;;;;;AAAA,mBAAmB;AACnB,yEAEyC;AADvC,uIAAA,8BAA8B,OAAA;AAEhC,mFAO8C;AAN5C,oIAAA,sBAAsB,OAAA;AACtB,yHAAA,WAAW,OAAA;AACX,+HAAA,iBAAiB,OAAA;AACjB,6HAAA,eAAe,OAAA;AACf,yIAAA,2BAA2B,OAAA;AAC3B,qIAAA,uBAAuB,OAAA;AAEzB,+FASoD;AARlD,4IAAA,wBAAwB,OAAA;AACxB,gJAAA,4BAA4B,OAAA;AAC5B,0IAAA,sBAAsB,OAAA;AACtB,8IAAA,0BAA0B,OAAA;AAC1B,kIAAA,cAAc,OAAA;AACd,gJAAA,4BAA4B,OAAA;AAC5B,+HAAA,WAAW,OAAA;AACX,oJAAA,gCAAgC,OAAA;AAElC,yEAEyC;AADvC,6IAAA,oCAAoC,OAAA;AAAE,2HAAA,kBAAkB,OAAA;AAE1D,yEAKyC;AAJvC,0HAAA,iBAAiB,OAAA;AACjB,4HAAA,mBAAmB,OAAA;AACnB,uHAAA,cAAc,OAAA;AACd,2HAAA,kBAAkB,OAAA;AAEpB,qFAG+C;AAF7C,uIAAA,UAAU,OAA4B;AACtC,mJAAA,yBAAyB,OAAwC;AAGnE,gBAAgB;AAChB,mEAaqC;AAJnC,mHAAA,YAAY,OAAA;AAKd,+CAiC2B;AAhCzB,6HAAA,gCAAgC,OAAA;AAChC,+HAAA,kCAAkC,OAAA;AAClC,wGAAA,WAAW,OAAA;AACX,mHAAA,sBAAsB,OAAA;AACtB,+GAAA,kBAAkB,OAAA;AAOlB,yGAAA,YAAY,OAAA;AACZ,+GAAA,kBAAkB,OAAA;AAClB,uHAAA,0BAA0B,OAAA;AAC1B,+GAAA,kBAAkB,OAAA;AAClB,uHAAA,0BAA0B,OAAA;AAC1B,gGAAA,GAAG,OAAA;AAeH,uGAAA,UAAU,OAAA;AAWZ,kBAAkB;AAClB,+CAAuE;AAA/D,gHAAA,oBAAoB,OAAA;AAAE,yGAAA,aAAa,OAAA;AAC3C,iDAAmL;AAA3K,yGAAA,YAAY,OAAA;AAAE,sHAAA,yBAAyB,OAAA;AAAE,6HAAA,gCAAgC,OAAA;AAAE,oHAAA,uBAAuB,OAAA;AAAE,8GAAA,iBAAiB,OAAA;AAAE,oHAAA,uBAAuB,OAAA;AACtJ,mEAAuF;AAA/E,wHAAA,kBAAkB,OAAA;AAAE,2HAAA,qBAAqB,OAAA;AACjD,mDAA2D;AAAnD,yHAAA,OAAO,OAAc;AAC7B,mDAAkF;AAA1E,oHAAA,sBAAsB,OAAA;AAAE,kHAAA,oBAAoB,OAAA;AACpD,iDAA0D;AAAlD,gHAAA,mBAAmB,OAAA"}

package/dist/service/ohtMeasurementsExtractor.service.d.ts

@@ -1,10 +1,11 @@
-import { LabToOhtContract, LabToOhtMapper, RangeExtraction, RangeExtractionResponse, UnitExtraction, ValueExtraction } from "../types/custom-parser.types";
+import { LabToOhtContract, LabToOhtMapper, RangeExtraction, RangeExtractionResponse, UnitExtraction, ValueExtraction, SynonymUnit, UnknownUnits } from "../types/custom-parser.types";
 import { Biomarker, BiomarkerValueType, Measurement, MeasurementValueComparator, PatientInfo, UnknownMeasurement, Exam } from "../types/oht.types";
-declare function extractUnit(unitExtraction: UnitExtraction | undefined, rawData: any, ohtBiomarker: Biomarker): {
+declare function extractUnit(unitExtraction: UnitExtraction | undefined, rawData: any, ohtBiomarker: Biomarker, synonymUnits?: SynonymUnit[] | null, partnerId?: string | null | undefined): {
     unit: string;
     isUnitParsedCorrectly: boolean;
     originalUnit: string;
     isArbitraryUnit: boolean;
+    unknownUnit: string;
 };
 declare function extractReferenceAnnotation(labToOhtMapper: LabToOhtMapper, rawExam: any, patientInfo: PatientInfo, documentDate?: Date, exams?: Exam[]): string;
 declare const getRangeFromPositionAndRegex: (rangeExtraction: RangeExtraction, rawData: any) => {
@@ -25,9 +26,10 @@ declare function parseExamValue(rawExamObj: any, valueExtraction: ValueExtractio
     isValueParsedCorrectly: boolean;
 };
 declare function checkValueForPlausibleValues(labToOhtMapper: LabToOhtMapper, ohtBiomarker: Biomarker, unit: string, value: number, isUnitParsedCorrectly: boolean): boolean;
-declare function ohtMeasurementsExtractor(labToOhtContract: LabToOhtContract, exams: Exam[], ohtCoreApiKey: string): Promise<{
+declare function ohtMeasurementsExtractor(labToOhtContract: LabToOhtContract, exams: Exam[], ohtCoreApiKey: string, partnerId?: string | null | undefined): Promise<{
     measurements: Measurement[];
     unknownMeasurements: UnknownMeasurement[];
+    unknownUnits: UnknownUnits[];
     isReportCorrectlyParsed: boolean;
 }>;
 export { ohtMeasurementsExtractor, checkValueForPlausibleValues, extractReferenceRanges, extractReferenceAnnotation, parseExamValue, getRangeFromPositionAndRegex, extractUnit, extractValueFromGreaterLowerThan };

package/dist/service/ohtMeasurementsExtractor.service.js

@@ -11,7 +11,6 @@ exports.extractReferenceAnnotation = extractReferenceAnnotation;
 exports.parseExamValue = parseExamValue;
 exports.extractUnit = extractUnit;
 exports.extractValueFromGreaterLowerThan = extractValueFromGreaterLowerThan;
-const custom_parser_types_1 = require("../types/custom-parser.types");
 const dataUtils_1 = require("../util-ts/dataUtils");
 const regexUtils_1 = require("../util-ts/regexUtils");
 const pinoLogger_1 = __importDefault(require("../util-ts/pinoLogger"));
@@ -20,16 +19,16 @@ const oht_types_1 = require("../types/oht.types");
 const logger = (0, pinoLogger_1.default)();
 const OHT_CORE_URL = process.env.OHT_CORE_URL;
 let filename = '';
-function extractUnit(unitExtraction, rawData, ohtBiomarker) {
+function extractUnit(unitExtraction, rawData, ohtBiomarker, synonymUnits = null, partnerId = null) {
     if (!(0, dataUtils_1.isBiomarkerValueNumerical)(ohtBiomarker)) {
-        return { unit: "None", isUnitParsedCorrectly: true, originalUnit: "", isArbitraryUnit: false };
+        return { unit: "None", isUnitParsedCorrectly: true, originalUnit: "", isArbitraryUnit: false, unknownUnit: '' };
     }
     const isArbitraryUnit = ohtBiomarker.acf.standardUnitArbUnitLogic === 'default';
     let originalUnit = '';
     // If there's a function to extract the unit, use it
     if (unitExtraction && unitExtraction?.extractionFunc) {
         const extractedUnitExtraction = unitExtraction.extractionFunc(rawData);
-        return { unit: extractedUnitExtraction ?? '', isUnitParsedCorrectly: !!extractedUnitExtraction, originalUnit: originalUnit, isArbitraryUnit };
+        return { unit: extractedUnitExtraction ?? '', isUnitParsedCorrectly: !!extractedUnitExtraction, originalUnit: originalUnit, isArbitraryUnit, unknownUnit: '' };
     }
     const unit = (0, dataUtils_1.extractValue)(rawData, unitExtraction?.unitPosition);
     let unitLowerCase = unit?.toLowerCase();
@@ -43,7 +42,7 @@ function extractUnit(unitExtraction, rawData, ohtBiomarker) {
     // If the biomarker uses an arbitrary unit, return standard unit and set the original unit as the unit extracted from the data
     if (isArbitraryUnit) {
         originalUnit = unit;
-        return { unit: standardUnit, isUnitParsedCorrectly: true, originalUnit: originalUnit, isArbitraryUnit: isArbitraryUnit };
+        return { unit: standardUnit, isUnitParsedCorrectly: true, originalUnit: originalUnit, isArbitraryUnit: isArbitraryUnit, unknownUnit: '' };
     }
     // First test if the biomarker has the unit explicit in the 'unity' field
     const allUnitContainsJsonUnit = allBmOhtUnits.includes(unitLowerCase);
@@ -52,28 +51,41 @@ function extractUnit(unitExtraction, rawData, ohtBiomarker) {
             unit: unit?.replaceAll(/ /g, ''),
             isUnitParsedCorrectly: true,
             originalUnit: originalUnit,
-            isArbitraryUnit: isArbitraryUnit
+            isArbitraryUnit: isArbitraryUnit,
+            unknownUnit: ''
         };
     }
     // Check if there are any Synonym configured
-    const allUnitContainsJsonUnitSynonyms = allBmOhtUnits.includes(custom_parser_types_1.unitSynonyms[unitLowerCase]?.toLowerCase());
-    if (unitLowerCase?.length > 0 && allUnitContainsJsonUnitSynonyms) {
-        return { unit: custom_parser_types_1.unitSynonyms[unitLowerCase], isUnitParsedCorrectly: true, originalUnit: originalUnit, isArbitraryUnit: isArbitraryUnit };
+    if (unitLowerCase?.length > 0) {
+        let resolvedUnit = null;
+        if (synonymUnits && synonymUnits.length > 0) {
+            const resolved = (0, dataUtils_1.resolveUnitFromSynonyms)(unitLowerCase, ohtBiomarker.id, partnerId, synonymUnits);
+            if (resolved.found && resolved.targetUnit) {
+                resolvedUnit = resolved.targetUnit;
+            }
+        }
+        if (resolvedUnit) {
+            const allUnitContainsJsonUnitSynonyms = allBmOhtUnits.includes(resolvedUnit.toLowerCase());
+            if (allUnitContainsJsonUnitSynonyms) {
+                return { unit: resolvedUnit, isUnitParsedCorrectly: true, originalUnit: originalUnit, isArbitraryUnit: isArbitraryUnit, unknownUnit: '' };
+            }
+        }
     }
     if (unitExtraction?.predefinedUnit) {
         const allUnitContainsUnitFromOhtMap = allBmOhtUnits.includes(unitExtraction.predefinedUnit.toLowerCase());
         // If the 'unity' field is not present, try to get the unit from the biomarker map
-        return { unit: unitExtraction?.predefinedUnit, isUnitParsedCorrectly: allUnitContainsUnitFromOhtMap, originalUnit: originalUnit, isArbitraryUnit: isArbitraryUnit };
+        return { unit: unitExtraction?.predefinedUnit, isUnitParsedCorrectly: allUnitContainsUnitFromOhtMap, originalUnit: originalUnit, isArbitraryUnit: isArbitraryUnit, unknownUnit: '' };
     }
     if (unitExtraction?.extractionRegex) {
         const regex = new RegExp(unitExtraction.extractionRegex);
         const match = rawData.match(regex);
         const allUnitContainsUnitMatch = allBmOhtUnits.includes(match?.[1]?.toLowerCase());
         if (match?.[1] && allUnitContainsUnitMatch) {
-            return { unit: match?.[1], isUnitParsedCorrectly: true, originalUnit: originalUnit, isArbitraryUnit: isArbitraryUnit };
+            return { unit: match?.[1], isUnitParsedCorrectly: true, originalUnit: originalUnit, isArbitraryUnit: isArbitraryUnit, unknownUnit: '' };
         }
     }
-    return { unit: '', isUnitParsedCorrectly: false, originalUnit: '', isArbitraryUnit: false };
+    // if the unit didnt match any of the cases, add the unit to an unknownUnit list
+    return { unit: '', isUnitParsedCorrectly: false, originalUnit: '', isArbitraryUnit: false, unknownUnit: unit };
 }
 function extractReferenceAnnotation(labToOhtMapper, rawExam, patientInfo, documentDate, exams) {
     const annotationExtractionFunc = labToOhtMapper?.referenceAsAnnotation?.extractionFunc;
@@ -279,10 +291,11 @@ function checkValueForPlausibleValues(labToOhtMapper, ohtBiomarker, unit, value,
     }
     return isPlausibleValue;
 }
-async function ohtMeasurementsExtractor(labToOhtContract, exams, ohtCoreApiKey) {
+async function ohtMeasurementsExtractor(labToOhtContract, exams, ohtCoreApiKey, partnerId) {
     filename = labToOhtContract.sourceFilename;
     const measurements = [];
     const unknownMeasurements = [];
+    const unknownUnits = [];
     let isReportCorrectlyParsed = true;
     const allPossibleOHTBmIds = [];
     [
@@ -300,6 +313,15 @@ async function ohtMeasurementsExtractor(labToOhtContract, exams, ohtCoreApiKey)
     };
     // api call to ohtCore to find biomarkers.
     const biomarkers = await (0, apiUtils_1.makeApiCallWithRetry)('post', `${OHT_CORE_URL}/v1/biomarker/biomarkers`, requestData, ohtCoreApiKey);
+    // Fetch synonym units from API if enabled
+    let synonymUnits = null;
+    if (partnerId) {
+        synonymUnits = await (0, dataUtils_1.fetchSynonymUnits)(partnerId, ohtCoreApiKey);
+        // If API fetch failed or returned empty, set to null to use hardcoded fallback
+        if (synonymUnits.length === 0) {
+            synonymUnits = null;
+        }
+    }
     labToOhtContract.labToOhtList.forEach((labToOhtMapper) => {
         let isMeasurementCorrectlyParsed = true;
         if (!labToOhtMapper.rawExam) {
@@ -326,7 +348,19 @@ async function ohtMeasurementsExtractor(labToOhtContract, exams, ohtCoreApiKey)
             const bmInfo = ohtBiomarker?.acf?.shortName ?
                 `name:${ohtBiomarker.acf.shortName}, bmId:${labToOhtMapper.ohtBmId}, labKey:${labToOhtMapper.labKey}` :
                 `bmId:${labToOhtMapper.ohtBmId}, labKey:${labToOhtMapper.labKey}`;
-            const { unit, isUnitParsedCorrectly, originalUnit, isArbitraryUnit } = extractUnit(labToOhtMapper.unitExtraction, rawExamObj, ohtBiomarker);
+            const { unit, isUnitParsedCorrectly, originalUnit, isArbitraryUnit, unknownUnit } = extractUnit(labToOhtMapper.unitExtraction, rawExamObj, ohtBiomarker, synonymUnits, partnerId);
+            if (unknownUnit.length > 0) {
+                unknownUnits.push({
+                    biomarkerId: ohtBiomarker.id,
+                    unit: unknownUnit,
+                    partnerId: partnerId,
+                    labKey: labToOhtMapper.labKey,
+                    ohtExam: labToOhtMapper.ohtExam,
+                    originalExam: labToOhtMapper.originalExam,
+                    biomarkerName: labToOhtMapper.biomarkerName,
+                    dataImportFileUploadId: null, // is null it will be set later in the structParser.service.ts
+                });
+            }
             if (!isUnitParsedCorrectly) {
                 logger.warn({ labToOhtMapper }, `Unit not extracted correctly for "${labToOhtMapper.ohtBmId}|${labToOhtMapper.labKey}", filename: ${filename}`);
                 labToOhtContract.errorMessages.push({
@@ -471,6 +505,7 @@ async function ohtMeasurementsExtractor(labToOhtContract, exams, ohtCoreApiKey)
     return {
         measurements,
         unknownMeasurements,
+        unknownUnits,
         isReportCorrectlyParsed
     };
 }

package/dist/service/ohtMeasurementsExtractor.service.js.map

@@ -1 +1 @@
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package/dist/service/reportCreator.service.d.ts

@@ -1,3 +1,4 @@
 import { DataImportFileUpload, UnknownMeasurementsBulk } from '../types/oht.types';
-declare function postDataImportFileUploadToCore(dataImportFileUpload: DataImportFileUpload, unknownMeasurements: UnknownMeasurementsBulk, rejectedStatus: string | undefined, rejectReason: string | undefined, isReportParsedCorrectly: boolean, filename: string, ohtCoreApiKey: string): Promise<DataImportFileUpload | null>;
+import { UnknownUnits } from '../types/custom-parser.types';
+declare function postDataImportFileUploadToCore(dataImportFileUpload: DataImportFileUpload, unknownMeasurements: UnknownMeasurementsBulk, unknownUnits: UnknownUnits[], rejectedStatus: string | undefined, rejectReason: string | undefined, isReportParsedCorrectly: boolean, filename: string, ohtCoreApiKey: string): Promise<DataImportFileUpload | null>;
 export { postDataImportFileUploadToCore };

package/dist/service/reportCreator.service.js

@@ -18,7 +18,7 @@ const dataUtils_1 = require("../util-ts/dataUtils");
 const apiUtils_1 = require("../util-ts/apiUtils");
 dotenv_1.default.config({ path: `.env.local` });
 const OHT_CORE_URL = process.env.OHT_CORE_URL;
-async function postDataImportFileUploadToCore(dataImportFileUpload, unknownMeasurements, rejectedStatus, rejectReason, isReportParsedCorrectly, filename, ohtCoreApiKey) {
+async function postDataImportFileUploadToCore(dataImportFileUpload, unknownMeasurements, unknownUnits, rejectedStatus, rejectReason, isReportParsedCorrectly, filename, ohtCoreApiKey) {
     let status = isReportParsedCorrectly
         ? oht_types_1.DataImportFileUploadStatus.PROCESSED
         : oht_types_1.DataImportFileUploadStatus.FOR_REVIEW;
@@ -78,6 +78,18 @@ async function postDataImportFileUploadToCore(dataImportFileUpload, unknownMeasu
                 }, `Failed to send unknown measurements to server, filename: ${filename}`);
             }
         }
+        if (unknownUnits.length > 0) {
+            try {
+                await (0, dataUtils_1.bulkCreateCustomParserUnknownUnits)(dataImportFileUpload.partnerId, unknownUnits, ohtCoreApiKey);
+            }
+            catch (error) {
+                logger.error({
+                    error: (0, apiUtils_1.parseErrorObj)(error),
+                    partnerId: dataImportFileUpload.partnerId,
+                    unknownUnits: unknownUnits
+                }, `Failed to send unknown units to server, filename: ${filename}`);
+            }
+        }
         if (isReportParsedCorrectly && rejectedStatus === undefined) {
             if (dataImportFileUpload?.labOrderId?.length > 0) {
                 // deprecate any previous fileUpload with same labOrderId and update current to READY

package/dist/service/reportCreator.service.js.map

@@ -1 +1 @@
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package/dist/service/transformationRules.service.d.ts

@@ -0,0 +1,22 @@
+import type { TransformationRule, ApplyRulesResult, ApplyRulesOptions, ValidationResult } from '../types/transformationRules.types';
+/**
+ * Apply multiple transformation rules to data
+ *
+ * Rules are applied sequentially in the order provided.
+ * Each rule is evaluated against the current state of the data after previous rules.
+ *
+ * @param rules - Array of transformation rules to apply
+ * @param inputData - OHT Exam data object (available as $exam in expressions)
+ * @param options - Optional configuration for rule application
+ * @param options.ohtReportJson - OHT Report/full document JSON (available as $report in expressions)
+ * @param options.contextJson - Context JSON like patient info (available as $context in expressions)
+ * @returns Promise<ApplyRulesResult> - Result containing transformed data, applied rule IDs, and any errors
+ */
+export declare const applyRules: (rules: TransformationRule[], inputData: Record<string, unknown>, options?: ApplyRulesOptions) => Promise<ApplyRulesResult>;
+/**
+ * Validate a JSONata expression
+ *
+ * @param expression - JSONata expression string to validate
+ * @returns ValidationResult - Object with valid flag and optional error message
+ */
+export declare const validateJsonataExpression: (expression: string) => ValidationResult;

package/dist/service/transformationRules.service.js

@@ -0,0 +1,172 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.validateJsonataExpression = exports.applyRules = void 0;
+const jsonata_1 = __importDefault(require("jsonata"));
+const transformationRules_1 = require("../util-ts/transformationRules");
+/**
+ * JSON Transformation Rules Engine
+ *
+ * This is a standalone, reusable library for applying transformation rules to JSON data.
+ * It uses JSONata expressions for powerful, declarative transformations.
+ *
+ * @packageDocumentation
+ */
+const createExpression = (expressionText, context) => {
+    const expression = (0, jsonata_1.default)(expressionText);
+    expression.assign('report', context.ohtReport);
+    expression.assign('exam', context.ohtExam);
+    expression.assign('context', context.context);
+    return expression;
+};
+/**
+ * Evaluate a JSONata condition with the given context
+ *
+ * @param condition - JSONata expression that returns a boolean
+ * @param context - Context object with root, item, and optional global data
+ * @returns Promise<boolean> - True if condition is met, false otherwise
+ */
+const evaluateCondition = async (condition, context) => {
+    try {
+        if (!condition || condition.trim() === '') {
+            return true;
+        }
+        const expression = createExpression(condition, context);
+        const result = await expression.evaluate(context.ohtExam);
+        return Boolean(result);
+    }
+    catch (error) {
+        console.error('Error evaluating condition:', error);
+        return false;
+    }
+};
+/**
+ * Evaluate a JSONata value expression
+ *
+ * @param valueExpression - JSONata expression to evaluate
+ * @param context - Context object with root, item, and optional global data
+ * @returns Promise<unknown> - Result of the expression evaluation
+ * @throws Error if expression evaluation fails
+ */
+const evaluateValueExpression = async (valueExpression, context) => {
+    try {
+        const expression = createExpression(valueExpression, context);
+        const result = await expression.evaluate(context.ohtExam);
+        return result;
+    }
+    catch (error) {
+        console.error('Error evaluating value expression:', error);
+        throw error;
+    }
+};
+/**
+ * Apply a single transformation rule to data
+ *
+ * @param rule - Transformation rule to apply
+ * @param data - Input data object
+ * @param options - Optional configuration (ohtReport and contextJson)
+ * @returns Promise<Record<string, unknown>> - Transformed data object
+ */
+const applyRule = async (rule, data, options = {}) => {
+    const context = {
+        ohtReport: options.ohtReportJson ?? {},
+        ohtExam: data,
+        context: options.contextJson ?? {},
+    };
+    const shouldApply = await evaluateCondition(rule.conditionExpression, context);
+    if (!shouldApply) {
+        return data;
+    }
+    const newValue = await evaluateValueExpression(rule.valueExpression, context);
+    const transformedData = { ...data };
+    if (rule.targetExpression.startsWith('$.')) {
+        const pathSegments = (0, transformationRules_1.parsePath)(rule.targetExpression);
+        (0, transformationRules_1.setValueByPath)(transformedData, pathSegments, newValue);
+    }
+    return transformedData;
+};
+/**
+ * Apply multiple transformation rules to data
+ *
+ * Rules are applied sequentially in the order provided.
+ * Each rule is evaluated against the current state of the data after previous rules.
+ *
+ * @param rules - Array of transformation rules to apply
+ * @param inputData - OHT Exam data object (available as $exam in expressions)
+ * @param options - Optional configuration for rule application
+ * @param options.ohtReportJson - OHT Report/full document JSON (available as $report in expressions)
+ * @param options.contextJson - Context JSON like patient info (available as $context in expressions)
+ * @returns Promise<ApplyRulesResult> - Result containing transformed data, applied rule IDs, and any errors
+ */
+const applyRules = async (rules, inputData, options = {}) => {
+    const result = await rules.reduce(async (accPromise, rule) => {
+        const acc = await accPromise;
+        try {
+            const context = {
+                ohtReport: options.ohtReportJson ?? {},
+                ohtExam: acc.data,
+                context: options.contextJson ?? {},
+            };
+            const shouldApply = await evaluateCondition(rule.conditionExpression, context);
+            if (shouldApply) {
+                const transformedData = await applyRule(rule, acc.data, options);
+                return {
+                    data: transformedData,
+                    appliedRules: [...acc.appliedRules, rule.id],
+                    errors: acc.errors,
+                };
+            }
+            return acc;
+        }
+        catch (error) {
+            return {
+                data: acc.data,
+                appliedRules: acc.appliedRules,
+                errors: [
+                    ...acc.errors,
+                    {
+                        ruleId: rule.id,
+                        ruleName: rule.name,
+                        error: (0, transformationRules_1.getErrorMessage)(error),
+                    },
+                ],
+            };
+        }
+    }, Promise.resolve({
+        data: { ...inputData },
+        appliedRules: [],
+        errors: [],
+    }));
+    return {
+        success: result.errors.length === 0,
+        data: result.data,
+        appliedRules: result.appliedRules,
+        errors: result.errors,
+    };
+};
+exports.applyRules = applyRules;
+/**
+ * Validate a JSONata expression
+ *
+ * @param expression - JSONata expression string to validate
+ * @returns ValidationResult - Object with valid flag and optional error message
+ */
+const validateJsonataExpression = (expression) => {
+    try {
+        if (!expression || expression.trim() === '') {
+            return { valid: true };
+        }
+        (0, jsonata_1.default)(expression);
+        return { valid: true };
+    }
+    catch (error) {
+        return {
+            valid: false,
+            error: (0, transformationRules_1.getErrorMessage)(error),
+        };
+    }
+};
+exports.validateJsonataExpression = validateJsonataExpression;
+//# sourceMappingURL=transformationRules.service.js.map

package/dist/service/transformationRules.service.js.map

@@ -0,0 +1 @@
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package/dist/types/custom-parser.types.d.ts

@@ -1,5 +1,24 @@
 import { ErrorMessage } from "./error.types";
 import { AnnotationConfig, DataOrigin, MeasurementValueComparator, OhtExam, PatientInfo } from "./oht.types";
+export interface SynonymUnit {
+    id: string;
+    partnerId: string | null;
+    biomarkerId: number;
+    unknownUnit: string;
+    targetUnit: string;
+    conversionFactor: number;
+    status: 'pending' | 'in_review' | 'approved' | 'ignored';
+}
+export interface UnknownUnits {
+    biomarkerId: number;
+    unit: string;
+    partnerId: string;
+    dataImportFileUploadId: string;
+    labKey: string;
+    ohtExam?: OhtExam;
+    originalExam?: OriginalExam;
+    biomarkerName?: string;
+}
 export declare const unitSynonyms: Record<string, string>;
 export interface ValueExtraction {
     valuePosition?: string;
@@ -52,6 +71,7 @@ export interface OriginalExam {
 }
 export interface LabToOhtMapper {
     ohtBmId?: number;
+    biomarkerName?: string;
     labKey: string;
     rawExam?: string;
     material?: string;
@@ -67,6 +87,8 @@ export interface LabToOhtMapper {
     unknownMeasurement?: UnknownMeasurementExtraction;
     annotationConfig?: AnnotationConfig;
     originalName?: string;
+    originalExam?: OriginalExam;
+    ohtExam?: OhtExam;
 }
 export interface LabToOhtContract {
     labToOhtList: LabToOhtMapper[];

package/dist/types/custom-parser.types.js.map

@@ -1 +1 @@
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package/dist/types/transformationRules.types.d.ts

@@ -0,0 +1,42 @@
+export interface TransformationRule {
+    id: string;
+    name: string;
+    description: string;
+    conditionExpression: string;
+    targetExpression: string;
+    valueExpression: string;
+    tags: string[];
+    createdAt: Date;
+    updatedAt: Date;
+    sampleOhtExam?: string;
+    sampleOhtReport?: string;
+    sampleContextJson?: string;
+}
+export interface TransformationContext {
+    ohtReport: Record<string, unknown>;
+    ohtExam: Record<string, unknown>;
+    context: Record<string, unknown>;
+}
+export interface ApplyRulesResult {
+    success: boolean;
+    data: Record<string, unknown>;
+    appliedRules: string[];
+    errors: Array<{
+        ruleId: string;
+        error: string;
+    }>;
+}
+export interface ApplyRulesOptions {
+    /**
+     * The full/global document (OHT Report) accessible inside JSONata expressions via $report
+     */
+    ohtReportJson?: Record<string, unknown>;
+    /**
+     * Additional context (e.g., patient info) accessible inside JSONata expressions via $context
+     */
+    contextJson?: Record<string, unknown>;
+}
+export interface ValidationResult {
+    valid: boolean;
+    error?: string;
+}

package/dist/types/transformationRules.types.js

@@ -0,0 +1,3 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+//# sourceMappingURL=transformationRules.types.js.map

package/dist/types/transformationRules.types.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"transformationRules.types.js","sourceRoot":"","sources":["../../types/transformationRules.types.ts"],"names":[],"mappings":""}

package/dist/util-ts/dataUtils.d.ts

@@ -1,9 +1,26 @@
 import { UnknownMeasurementsBulk, AnnotationLabKey } from '../types/oht.types';
+import { SynonymUnit, UnknownUnits } from '../types/custom-parser.types';
+/**
+ * Resolve unit from synonym units following priority:
+ * 1. Biomarker-specific partner synonym
+ * 2. Partner-specific synonym
+ * 3. Global synonym
+ */
+export declare function resolveUnitFromSynonyms(unitLowerCase: string, biomarkerId: number, partnerId: string | null | undefined, synonymUnits: SynonymUnit[]): {
+    targetUnit: string | null;
+    found: boolean;
+};
 export declare function isBiomarkerValueNumerical(biomarker: any): boolean;
 export declare function isBiomarkerExternalNoVisualRange(biomarker: any): boolean;
 export declare const extractValue: (obj: any, position?: string) => any;
 export declare const getMappedBiomarkers: (partnerId: string, ohtCoreApiKey: string) => Promise<any>;
 export declare const updatePartnerCustomParserUnmappedLabKeys: (partnerId: string, unknownMeasurementsBulk: UnknownMeasurementsBulk, ohtCoreApiKey: string) => Promise<void>;
+export declare const bulkCreateCustomParserUnknownUnits: (partnerId: string, unknownUnits: UnknownUnits[], ohtCoreApiKey: string) => Promise<void>;
+/**
+ * Fetch synonym units from oht-core API endpoint
+ * Returns all approved resolved synonym units (backend already filters and returns all results)
+ */
+export declare const fetchSynonymUnits: (partnerId: string | null | undefined, ohtCoreApiKey: string) => Promise<SynonymUnit[]>;
 /**
  * Processes appended biomarker mappings by extracting values from additional labKeys
  * Compatible with AnnotationPreviewService interface but returns object with text property

package/dist/util-ts/dataUtils.js

@@ -3,13 +3,58 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.updatePartnerCustomParserUnmappedLabKeys = exports.getMappedBiomarkers = exports.extractValue = void 0;
+exports.fetchSynonymUnits = exports.bulkCreateCustomParserUnknownUnits = exports.updatePartnerCustomParserUnmappedLabKeys = exports.getMappedBiomarkers = exports.extractValue = void 0;
+exports.resolveUnitFromSynonyms = resolveUnitFromSynonyms;
 exports.isBiomarkerValueNumerical = isBiomarkerValueNumerical;
 exports.isBiomarkerExternalNoVisualRange = isBiomarkerExternalNoVisualRange;
 exports.processAppendedMappings = processAppendedMappings;
 const apiUtils_1 = require("./apiUtils");
 const pinoLogger_1 = __importDefault(require("./pinoLogger"));
 const logger = (0, pinoLogger_1.default)();
+/**
+ * Normalize unit string for comparison (lowercase, remove spaces)
+ */
+function normalizeUnit(unit) {
+    return unit?.toLowerCase().replaceAll(/ /g, '') ?? '';
+}
+/**
+ * Resolve unit from synonym units following priority:
+ * 1. Biomarker-specific partner synonym
+ * 2. Partner-specific synonym
+ * 3. Global synonym
+ */
+function resolveUnitFromSynonyms(unitLowerCase, biomarkerId, partnerId, synonymUnits) {
+    if (!synonymUnits || synonymUnits.length === 0) {
+        return { targetUnit: '', found: false };
+    }
+    const normalizedUnit = normalizeUnit(unitLowerCase);
+    // Priority 1: Biomarker-specific partner synonym
+    if (biomarkerId && partnerId) {
+        const biomarkerPartnerMatch = synonymUnits.find((unit) => unit.biomarkerId === biomarkerId &&
+            unit.partnerId === partnerId &&
+            normalizeUnit(unit.unknownUnit) === normalizedUnit);
+        if (biomarkerPartnerMatch) {
+            return { targetUnit: biomarkerPartnerMatch.targetUnit, found: true };
+        }
+    }
+    // Priority 2: Partner-specific synonym (biomarkerId is 0 or not set)
+    if (partnerId) {
+        const partnerMatch = synonymUnits.find((unit) => (unit.biomarkerId === 0 || !unit.biomarkerId) &&
+            unit.partnerId === partnerId &&
+            normalizeUnit(unit.unknownUnit) === normalizedUnit);
+        if (partnerMatch) {
+            return { targetUnit: partnerMatch.targetUnit, found: true };
+        }
+    }
+    // Priority 3: Global synonym (partnerId is null, biomarkerId is 0 or not set)
+    const globalMatch = synonymUnits.find((unit) => unit.partnerId === null &&
+        (unit.biomarkerId === 0 || !unit.biomarkerId) &&
+        normalizeUnit(unit.unknownUnit) === normalizedUnit);
+    if (globalMatch) {
+        return { targetUnit: globalMatch.targetUnit, found: true };
+    }
+    return { targetUnit: '', found: false }; //TODO target unit is empty ''
+}
 function isBiomarkerValueNumerical(biomarker) {
     return biomarker?.acf?.compatibility !== 'external_alphanumerical';
 }
@@ -47,6 +92,36 @@ const updatePartnerCustomParserUnmappedLabKeys = async (partnerId, unknownMeasur
     logger.info(response.data, `Resp: POST /v1/customparser/partners/${partnerId}/unmapped/bulk`);
 };
 exports.updatePartnerCustomParserUnmappedLabKeys = updatePartnerCustomParserUnmappedLabKeys;
+// function that uses POST request at /v1/synonym/partners/{partnerId}/unknown-units/bulk to send the unknownUnits to the server
+const bulkCreateCustomParserUnknownUnits = async (partnerId, unknownUnits, ohtCoreApiKey) => {
+    const response = await (0, apiUtils_1.makeApiCallWithRetry)('post', `${OHT_CORE_URL}/v1/synonym/partners/${partnerId}/unknown-units/bulk`, {
+        partnerId: partnerId,
+        unknownUnits: unknownUnits,
+    }, ohtCoreApiKey);
+    logger.info(response.data, `Resp: POST /v1/synonym/partners/${partnerId}/unknown-units/bulk`);
+};
+exports.bulkCreateCustomParserUnknownUnits = bulkCreateCustomParserUnknownUnits;
+/**
+ * Fetch synonym units from oht-core API endpoint
+ * Returns all approved resolved synonym units (backend already filters and returns all results)
+ */
+const fetchSynonymUnits = async (partnerId, ohtCoreApiKey) => {
+    try {
+        const url = `${OHT_CORE_URL}/v1/synonym/synonym-units/resolved${partnerId ? `?partnerId=${partnerId}` : ''}`;
+        const response = await (0, apiUtils_1.makeApiCallWithRetry)('get', url, null, ohtCoreApiKey);
+        // Backend returns array directly (already filtered for approved status and non-null targetUnit)
+        const synonymUnits = Array.isArray(response?.data)
+            ? response.data
+            : response?.data?.items || [];
+        logger.info({ partnerId, count: synonymUnits.length }, `Fetched ${synonymUnits.length} synonym units from API`);
+        return synonymUnits;
+    }
+    catch (error) {
+        logger.warn({ partnerId, error: error.message }, `Failed to fetch synonym units from API, falling back to hardcoded synonyms`);
+        return [];
+    }
+};
+exports.fetchSynonymUnits = fetchSynonymUnits;
 /**
  * Processes appended biomarker mappings by extracting values from additional labKeys
  * Compatible with AnnotationPreviewService interface but returns object with text property

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package/dist/util-ts/transformationRules.d.ts

@@ -0,0 +1,35 @@
+/**
+ * Converts an unknown error to a string message
+ * Handles Error objects, objects with message property, and other types
+ *
+ * @param error - The error to convert
+ * @returns String representation of the error
+ */
+export declare function getErrorMessage(error: unknown): string;
+/**
+ * Lightweight deep equality check for JSON-serializable objects.
+ * Only handles primitives, arrays, and plain objects (no functions, symbols, etc.)
+ * which is sufficient for transformation rule data.
+ *
+ * @param obj1 - First object to compare
+ * @param obj2 - Second object to compare
+ * @returns True if objects are deeply equal, false otherwise
+ */
+export declare function isDeepEqual(obj1: unknown, obj2: unknown): boolean;
+/**
+ * Parse a JSONPath-like target path into segments
+ * Supports dot notation, bracket notation, and array indices
+ *
+ * @param path - Path string (e.g., "$.user.name", "$.items[0]", "$.data['key']")
+ * @returns Array of path segments
+ */
+export declare function parsePath(path: string): Array<string | number>;
+/**
+ * Set a value in an object using a parsed path
+ * Creates intermediate objects/arrays as needed
+ *
+ * @param obj - Target object to modify
+ * @param segments - Path segments from parsePath()
+ * @param value - Value to set
+ */
+export declare function setValueByPath(obj: Record<string, unknown>, segments: Array<string | number>, value: unknown): void;

package/dist/util-ts/transformationRules.js

@@ -0,0 +1,157 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.getErrorMessage = getErrorMessage;
+exports.isDeepEqual = isDeepEqual;
+exports.parsePath = parsePath;
+exports.setValueByPath = setValueByPath;
+/**
+ * Converts an unknown error to a string message
+ * Handles Error objects, objects with message property, and other types
+ *
+ * @param error - The error to convert
+ * @returns String representation of the error
+ */
+function getErrorMessage(error) {
+    if (error instanceof Error) {
+        return error.message;
+    }
+    if (typeof error === 'object' && error !== null && 'message' in error) {
+        const maybeMessage = error.message;
+        return typeof maybeMessage === 'string' ? maybeMessage : String(maybeMessage);
+    }
+    return String(error);
+}
+/**
+ * Lightweight deep equality check for JSON-serializable objects.
+ * Only handles primitives, arrays, and plain objects (no functions, symbols, etc.)
+ * which is sufficient for transformation rule data.
+ *
+ * @param obj1 - First object to compare
+ * @param obj2 - Second object to compare
+ * @returns True if objects are deeply equal, false otherwise
+ */
+function isDeepEqual(obj1, obj2) {
+    // Same reference or both null/undefined
+    if (obj1 === obj2)
+        return true;
+    // Different types or one is null
+    if (typeof obj1 !== typeof obj2 || obj1 === null || obj2 === null || typeof obj1 !== 'object') {
+        return false;
+    }
+    // Handle arrays
+    if (Array.isArray(obj1) && Array.isArray(obj2)) {
+        if (obj1.length !== obj2.length)
+            return false;
+        return obj1.every((item, index) => isDeepEqual(item, obj2[index]));
+    }
+    // One is array, other is not
+    if (Array.isArray(obj1) !== Array.isArray(obj2)) {
+        return false;
+    }
+    // Handle plain objects
+    const keys1 = Object.keys(obj1);
+    const keys2 = Object.keys(obj2);
+    if (keys1.length !== keys2.length)
+        return false;
+    return keys1.every((key) => isDeepEqual(obj1[key], obj2[key]));
+}
+/**
+ * Parse a JSONPath-like target path into segments
+ * Supports dot notation, bracket notation, and array indices
+ *
+ * @param path - Path string (e.g., "$.user.name", "$.items[0]", "$.data['key']")
+ * @returns Array of path segments
+ */
+function parsePath(path) {
+    // Remove leading $. if present
+    const cleanPath = path.startsWith('$.') ? path.substring(2) : path;
+    if (!cleanPath) {
+        return [];
+    }
+    const segments = [];
+    let currentSegment = '';
+    let i = 0;
+    while (i < cleanPath.length) {
+        const char = cleanPath[i];
+        // Handle bracket notation for arrays [0] or objects ['key']
+        if (char === '[') {
+            // Save any accumulated segment
+            if (currentSegment) {
+                segments.push(currentSegment);
+                currentSegment = '';
+            }
+            i += 1; // Move past [
+            let bracketContent = '';
+            // Extract content between brackets
+            while (i < cleanPath.length && cleanPath[i] !== ']') {
+                bracketContent += cleanPath[i];
+                i += 1;
+            }
+            // Parse bracket content
+            if (bracketContent) {
+                // Remove quotes if present (for string keys like ['key'])
+                if ((bracketContent.startsWith("'") && bracketContent.endsWith("'"))
+                    || (bracketContent.startsWith('"') && bracketContent.endsWith('"'))) {
+                    segments.push(bracketContent.slice(1, -1));
+                }
+                else {
+                    // Try to parse as number (for array indices)
+                    const numValue = Number(bracketContent);
+                    if (!Number.isNaN(numValue) && Number.isInteger(numValue)) {
+                        segments.push(numValue);
+                    }
+                    else {
+                        segments.push(bracketContent);
+                    }
+                }
+            }
+            i += 1; // Move past ]
+        }
+        else if (char === '.') {
+            // Dot separator - save current segment
+            if (currentSegment) {
+                segments.push(currentSegment);
+                currentSegment = '';
+            }
+            i += 1;
+        }
+        else {
+            // Regular character - accumulate
+            currentSegment += char;
+            i += 1;
+        }
+    }
+    // Add final segment if any
+    if (currentSegment) {
+        segments.push(currentSegment);
+    }
+    return segments;
+}
+/**
+ * Set a value in an object using a parsed path
+ * Creates intermediate objects/arrays as needed
+ *
+ * @param obj - Target object to modify
+ * @param segments - Path segments from parsePath()
+ * @param value - Value to set
+ */
+function setValueByPath(obj, segments, value) {
+    if (segments.length === 0) {
+        return;
+    }
+    let current = obj;
+    // Navigate to parent, creating intermediate structures as needed
+    for (let i = 0; i < segments.length - 1; i += 1) {
+        const segment = segments[i];
+        const nextSegment = segments[i + 1];
+        if (!(segment in current)) {
+            // Create array if next segment is a number, otherwise create object
+            current[segment] = typeof nextSegment === 'number' ? [] : {};
+        }
+        current = current[segment];
+    }
+    // Set the final value
+    const lastSegment = segments[segments.length - 1];
+    current[lastSegment] = value;
+}
+//# sourceMappingURL=transformationRules.js.map

package/dist/util-ts/transformationRules.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@openhealth/oht-custom-parser-lib",
-  "version": "0.2.50",
+  "version": "0.2.53",
   "description": "Shared nodejs lib with with reusable functions",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
@@ -20,6 +20,7 @@
     "bottleneck": "^2.19.5",
     "dayjs": "^1.11.13",
     "dotenv": "^16.4.5",
+    "jsonata": "^2.1.0",
     "moment": "^2.30.1",
     "mongodb": "^6.3.0",
     "pino": "^8.19.0"