@openhealth/oht-custom-parser-lib 0.2.39 → 0.2.41

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Files changed (11) hide show
  1. package/dist/service/ohtMeasurementsExtractor.service.d.ts +3 -3
  2. package/dist/service/ohtMeasurementsExtractor.service.js +28 -10
  3. package/dist/service/ohtMeasurementsExtractor.service.js.map +1 -1
  4. package/dist/types/custom-parser.types.d.ts +3 -1
  5. package/dist/types/oht.types.d.ts +57 -6
  6. package/dist/types/oht.types.js.map +1 -1
  7. package/dist/util-ts/apiUtils.d.ts +1 -1
  8. package/dist/util-ts/dataUtils.d.ts +8 -1
  9. package/dist/util-ts/dataUtils.js +80 -0
  10. package/dist/util-ts/dataUtils.js.map +1 -1
  11. package/package.json +1 -1
package/dist/service/ohtMeasurementsExtractor.service.d.ts CHANGED
@@ -1,10 +1,10 @@
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  import { LabToOhtContract, LabToOhtMapper, RangeExtraction, RangeExtractionResponse, UnitExtraction, ValueExtraction } from "../types/custom-parser.types";
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- import { Biomarker, BiomarkerValueType, Measurement, MeasurementValueComparator, PatientInfo, UnknownMeasurement } from "../types/oht.types";
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+ import { Biomarker, BiomarkerValueType, Measurement, MeasurementValueComparator, PatientInfo, UnknownMeasurement, Exam } from "../types/oht.types";
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  declare function extractUnit(unitExtraction: UnitExtraction | undefined, rawData: any, ohtBiomarker: Biomarker): {
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  unit: string;
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  isUnitParsedCorrectly: boolean;
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  };
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- declare function extractReferenceAnnotation(labToOhtMapper: LabToOhtMapper, rawExam: any, patientInfo: PatientInfo, documentDate?: Date): any;
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+ declare function extractReferenceAnnotation(labToOhtMapper: LabToOhtMapper, rawExam: any, patientInfo: PatientInfo, documentDate?: Date, exams?: Exam[]): string;
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  declare const getRangeFromPositionAndRegex: (rangeExtraction: RangeExtraction, rawData: any) => {
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  from: number | undefined;
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  to: number | undefined;
@@ -23,7 +23,7 @@ declare function parseExamValue(rawExamObj: any, valueExtraction: ValueExtractio
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  isValueParsedCorrectly: boolean;
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  };
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  declare function checkValueForPlausibleValues(labToOhtMapper: LabToOhtMapper, ohtBiomarker: Biomarker, unit: string, value: number, isUnitParsedCorrectly: boolean): boolean;
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- declare function ohtMeasurementsExtractor(labToOhtContract: LabToOhtContract, ohtCoreApiKey: string): Promise<{
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+ declare function ohtMeasurementsExtractor(labToOhtContract: LabToOhtContract, exams: Exam[], ohtCoreApiKey: string): Promise<{
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  measurements: Measurement[];
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  unknownMeasurements: UnknownMeasurement[];
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  isReportCorrectlyParsed: boolean;
package/dist/service/ohtMeasurementsExtractor.service.js CHANGED
@@ -66,16 +66,31 @@ function extractUnit(unitExtraction, rawData, ohtBiomarker) {
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  }
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  return { unit: '', isUnitParsedCorrectly: false };
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  }
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- function extractReferenceAnnotation(labToOhtMapper, rawExam, patientInfo, documentDate) {
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+ function extractReferenceAnnotation(labToOhtMapper, rawExam, patientInfo, documentDate, exams) {
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  const annotationExtractionFunc = labToOhtMapper?.referenceAsAnnotation?.extractionFunc;
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+ let annotation = '';
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+ // if it is an appended mapping, add the extracted values to annotation
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+ if (labToOhtMapper?.annotationConfig?.enabled) {
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+ const appendedValues = (0, dataUtils_1.processAppendedMappings)(exams, labToOhtMapper.annotationConfig.labKeys);
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+ if (appendedValues) {
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+ annotation += appendedValues;
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+ }
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+ }
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+ // if annotationExtractionFunc exists, add its result to annotation with line break
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  if (annotationExtractionFunc) {
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- return annotationExtractionFunc(rawExam, labToOhtMapper, patientInfo, documentDate);
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+ const extractedAnnotation = annotationExtractionFunc(rawExam, labToOhtMapper, patientInfo, documentDate);
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+ if (extractedAnnotation) {
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+ annotation += annotation ? `\n${extractedAnnotation}` : extractedAnnotation;
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+ }
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  }
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  else {
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  const extractedReference = (0, dataUtils_1.extractValue)(rawExam, labToOhtMapper?.referenceAsAnnotation?.position);
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  const reference = extractedReference?.valor?.trim() || extractedReference?.val?.trim() || extractedReference;
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- return reference?.length > 0 ? reference : undefined;
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+ if (reference?.length > 0) {
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+ annotation += annotation ? `\n${reference}` : reference;
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+ }
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  }
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+ return annotation || undefined;
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  }
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  const getRangeFromPositionAndRegex = (rangeExtraction, rawData) => {
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  const extractionRegex = rangeExtraction.extractionRegex;
@@ -251,7 +266,7 @@ function checkValueForPlausibleValues(labToOhtMapper, ohtBiomarker, unit, value,
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  }
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  return isPlausibleValue;
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  }
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- async function ohtMeasurementsExtractor(labToOhtContract, ohtCoreApiKey) {
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+ async function ohtMeasurementsExtractor(labToOhtContract, exams, ohtCoreApiKey) {
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  filename = labToOhtContract.sourceFilename;
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  const measurements = [];
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  const unknownMeasurements = [];
@@ -350,8 +365,8 @@ async function ohtMeasurementsExtractor(labToOhtContract, ohtCoreApiKey) {
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  }
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  }
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  let extractedAnnotation;
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- if (labToOhtMapper?.referenceAsAnnotation?.use) {
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- extractedAnnotation = extractReferenceAnnotation(labToOhtMapper, rawExamObj, labToOhtContract.patientInfo, labToOhtContract.documentDate);
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+ if (labToOhtMapper?.referenceAsAnnotation?.use || labToOhtMapper?.annotationConfig?.enabled) {
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+ extractedAnnotation = extractReferenceAnnotation(labToOhtMapper, rawExamObj, labToOhtContract.patientInfo, labToOhtContract.documentDate, exams);
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  }
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  const material = (0, dataUtils_1.extractValue)(rawExamObj, labToOhtMapper.material);
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  const method = (0, dataUtils_1.extractValue)(rawExamObj, labToOhtMapper.method);
@@ -364,9 +379,11 @@ async function ohtMeasurementsExtractor(labToOhtContract, ohtCoreApiKey) {
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  originalUnit = originalUnit?.replaceAll(/ /g, '') ?? '';
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  alphaValue = alphaValue && unit?.length > 0 ? `${alphaValue} ${originalUnit}`.trim() : alphaValue;
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  }
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- const effectiveDate = (0, dataUtils_1.extractValue)(rawExamObj, labToOhtMapper.effectiveDate);
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- const examCollectionDate = (0, dataUtils_1.extractValue)(rawExamObj, labToOhtMapper.examCollectionDate);
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- const examEffectiveDate = (0, dataUtils_1.extractValue)(rawExamObj, labToOhtMapper.examEffectiveDate);
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+ // adding dates for measurements in ISO 8601 format
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+ const collectionDate = labToOhtMapper?.collectionDate ? new Date(labToOhtMapper.collectionDate).toISOString() : null;
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+ const effectiveDate = labToOhtMapper?.effectiveDate ? new Date(labToOhtMapper.effectiveDate).toISOString() : null;
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+ const examCollectionDate = labToOhtMapper?.examCollectionDate ? new Date(labToOhtMapper.examCollectionDate).toISOString() : null;
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+ const examEffectiveDate = labToOhtMapper?.examEffectiveDate ? new Date(labToOhtMapper.examEffectiveDate).toISOString() : null;
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  let measurement = {
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  biomarkerId: ohtBiomarker.id,
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  valueType,
@@ -382,6 +399,7 @@ async function ohtMeasurementsExtractor(labToOhtContract, ohtCoreApiKey) {
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  method,
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  isDigitalizationApproved: isMeasurementCorrectlyParsed,
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  isManualChecked: isMeasurementCorrectlyParsed,
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+ collectionDate: collectionDate,
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  effectiveDate: effectiveDate,
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  examCollectionDate: examCollectionDate,
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  examEffectiveDate: examEffectiveDate,
@@ -413,7 +431,7 @@ async function ohtMeasurementsExtractor(labToOhtContract, ohtCoreApiKey) {
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  : { contentType: '', exam: '' };
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  const ohtExam = labToOhtMapper?.unknownMeasurement?.ohtExam
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  ? labToOhtMapper.unknownMeasurement.ohtExam
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- : { labKey: '', value: '', unit: '', collectionDate: '', examDate: '', documentDate: '', description: '', mnemonic: '', examName: '', range: [], annotation: '' };
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+ : { labKey: '', value: '', unit: '', collectionDate: '', documentDate: '', description: '', mnemonic: '', examName: '', range: [], annotation: '' };
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  const dataOrigin = labToOhtMapper?.unknownMeasurement?.dataOrigin
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  ? [labToOhtMapper?.unknownMeasurement?.dataOrigin]
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  : [{ path: '' }];
package/dist/service/ohtMeasurementsExtractor.service.js.map CHANGED
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1
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package/dist/types/custom-parser.types.d.ts CHANGED
@@ -1,5 +1,5 @@
1
1
  import { ErrorMessage } from "./error.types";
2
- import { DataOrigin, MeasurementValueComparator, OhtExam, PatientInfo } from "./oht.types";
2
+ import { BackendBiomarkerMapping, DataOrigin, MeasurementValueComparator, OhtExam, PatientInfo } from "./oht.types";
3
3
  export declare const unitSynonyms: Record<string, string>;
4
4
  export interface ValueExtraction {
5
5
  valuePosition?: string;
@@ -56,6 +56,7 @@ export interface LabToOhtMapper {
56
56
  rawExam?: string;
57
57
  material?: string;
58
58
  method?: string;
59
+ collectionDate?: string;
59
60
  effectiveDate?: string;
60
61
  examCollectionDate?: string;
61
62
  examEffectiveDate?: string;
@@ -64,6 +65,7 @@ export interface LabToOhtMapper {
64
65
  rangeExtraction?: RangeExtraction;
65
66
  referenceAsAnnotation?: ReferenceAsAnnotation;
66
67
  unknownMeasurement?: UnknownMeasurementExtraction;
68
+ annotationConfig?: BackendBiomarkerMapping['annotationConfig'];
67
69
  }
68
70
  export interface LabToOhtContract {
69
71
  labToOhtList: LabToOhtMapper[];
package/dist/types/oht.types.d.ts CHANGED
@@ -122,10 +122,10 @@ export interface Measurement {
122
122
  score?: number;
123
123
  method?: string;
124
124
  material?: string;
125
- collectionDate?: Date;
126
- effectiveDate?: Date;
127
- examCollectionDate?: Date;
128
- examEffectiveDate?: Date;
125
+ collectionDate?: string;
126
+ effectiveDate?: string;
127
+ examCollectionDate?: string;
128
+ examEffectiveDate?: string;
129
129
  isDigitalizationApproved?: boolean;
130
130
  isManualChecked?: boolean;
131
131
  isAiParsed?: boolean;
@@ -162,8 +162,10 @@ export interface OhtExam {
162
162
  unit: string;
163
163
  method?: string;
164
164
  material?: string;
165
- collectionDate: string;
166
- examDate: string;
165
+ collectionDate?: string;
166
+ effectiveDate?: string;
167
+ examCollectionDate?: string;
168
+ examEffectiveDate?: string;
167
169
  documentDate: string;
168
170
  description: string;
169
171
  mnemonic: string;
@@ -361,3 +363,52 @@ export declare enum AcfBiomarkerRangeAnnotationCheck {
361
363
  SHOW_WOMEN_IF_NO_EXTERNAL = "SHOW_WOMEN_IF_NO_EXTERNAL",
362
364
  SHOW_MEN_IF_NO_EXTERNAL = "SHOW_MEN_IF_NO_EXTERNAL"
363
365
  }
366
+ export interface BackendBiomarkerMapping {
367
+ ohtBmId: number;
368
+ labKey: string;
369
+ comment?: string;
370
+ jsonBlob?: any;
371
+ isIgnored?: boolean;
372
+ keepAsUnmapped?: boolean;
373
+ /** Range extraction configuration */
374
+ rangeExtraction: {
375
+ enabled: boolean;
376
+ useInternalRange: boolean;
377
+ rangePosition?: string;
378
+ extractionRegex?: string;
379
+ extractionFunc?: string;
380
+ };
381
+ /** Unit extraction configuration */
382
+ unitExtraction: {
383
+ enabled: boolean;
384
+ predefinedUnit?: string;
385
+ unitPosition?: string;
386
+ extractionRegex?: string;
387
+ extractionFunc?: string;
388
+ };
389
+ /** Reference as annotation configuration */
390
+ referenceAsAnnotation: {
391
+ enabled: boolean;
392
+ position?: string;
393
+ annotationType?: string;
394
+ extractionFunc?: string;
395
+ };
396
+ /** Annotation configuration for appended biomarkers */
397
+ annotationConfig?: {
398
+ enabled: boolean;
399
+ labKeys?: Array<{
400
+ labKey: string;
401
+ extractionPaths: Array<{
402
+ path: string;
403
+ required: boolean;
404
+ format?: string;
405
+ defaultValue?: string;
406
+ }>;
407
+ required: boolean;
408
+ prefix?: string;
409
+ suffix?: string;
410
+ }>;
411
+ };
412
+ /** Optional tagged LOINC code */
413
+ taggedLoincCode?: string;
414
+ }
package/dist/types/oht.types.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"oht.types.js","sourceRoot":"","sources":["../../types/oht.types.ts"],"names":[],"mappings":";;;AAyOA,IAAY,GAIX;AAJD,WAAY,GAAG;IACb,oBAAa,CAAA;IACb,wBAAiB,CAAA;IACjB,sBAAe,CAAA;AACjB,CAAC,EAJW,GAAG,mBAAH,GAAG,QAId;AAED,IAAY,UAGX;AAHD,WAAY,UAAU;IACpB,qDAAuC,CAAA;IACvC,6BAAe,CAAA;AACjB,CAAC,EAHW,UAAU,0BAAV,UAAU,QAGrB;AAED,IAAY,0BAYX;AAZD,WAAY,0BAA0B;IACpC,mDAAqB,CAAA;IACrB,iDAAmB,CAAA;IACnB,uDAAyB,CAAA;IACzB,uDAAyB,CAAA;IACzB,qDAAuB,CAAA;IACvB,qDAAuB,CAAA;IACvB,6CAAe,CAAA;IACf,iDAAmB,CAAA;IACnB,mDAAqB,CAAA;IACrB,mDAAqB,CAAA;IACrB,2DAA6B,CAAA;AAC/B,CAAC,EAZW,0BAA0B,0CAA1B,0BAA0B,QAYrC;AAED,IAAY,kBAGX;AAHD,WAAY,kBAAkB;IAC5B,uDAAiC,CAAA;IACjC,6CAAuB,CAAA;AACzB,CAAC,EAHW,kBAAkB,kCAAlB,kBAAkB,QAG7B;AAED,IAAY,0BAIX;AAJD,WAAY,0BAA0B;IACpC,6CAAe,CAAA;IACf,2DAA6B,CAAA;IAC7B,qDAAuB,CAAA;AACzB,CAAC,EAJW,0BAA0B,0CAA1B,0BAA0B,QAIrC;AAED,IAAY,kBAOX;AAPD,WAAY,kBAAkB;IAC5B,yCAAmB,CAAA;IACnB,yCAAmB,CAAA;IACnB,+CAAyB,CAAA;IACzB,mCAAa,CAAA;IACb,qCAAe,CAAA;IACf,2CAAqB,CAAA;AACvB,CAAC,EAPW,kBAAkB,kCAAlB,kBAAkB,QAO7B;AAED,IAAY,YASX;AATD,WAAY,YAAY;IACtB,6CAA6B,CAAA;IAC7B,mDAAmC,CAAA;IACnC,yDAAyC,CAAA;IACzC,2DAA2C,CAAA;IAC3C,2DAA2C,CAAA;IAC3C,+DAA+C,CAAA;IAC/C,2DAA2C,CAAA;IAC3C,mDAAmC,CAAA;AACrC,CAAC,EATW,YAAY,4BAAZ,YAAY,QASvB;AA4CD,IAAY,YAIX;AAJD,WAAY,YAAY;IACtB,+BAAe,CAAA;IACf,iCAAiB,CAAA;IACjB,2BAAW,CAAA;AACb,CAAC,EAJW,YAAY,4BAAZ,YAAY,QAIvB;AAsCD,IAAY,kBAIX;AAJD,WAAY,kBAAkB;IAC5B,6CAAuB,CAAA;IACvB,2CAAqB,CAAA;IACrB,uDAAiC,CAAA;AACnC,CAAC,EAJW,kBAAkB,kCAAlB,kBAAkB,QAI7B;AAED,IAAY,sBAOX;AAPD,WAAY,sBAAsB;IAChC,+CAAqB,CAAA;IACrB,+CAAqB,CAAA;IACrB,4EAAkD,CAAA;IAClD,4EAAkD,CAAA;IAClD,4DAAkC,CAAA;IAClC,2CAAiB,CAAA;AACnB,CAAC,EAPW,sBAAsB,sCAAtB,sBAAsB,QAOjC;AAED,IAAY,WAGX;AAHD,WAAY,WAAW;IACrB,wBAAS,CAAA;IACT,sCAAuB,CAAA;AACzB,CAAC,EAHW,WAAW,2BAAX,WAAW,QAGtB;AAED,IAAY,kCAGX;AAHD,WAAY,kCAAkC;IAC5C,6DAAuB,CAAA;IACvB,iEAA2B,CAAA;AAC7B,CAAC,EAHW,kCAAkC,kDAAlC,kCAAkC,QAG7C;AAED,IAAY,gCAMX;AAND,WAAY,gCAAgC;IAC1C,2DAAuB,CAAA;IACvB,6EAAyC,CAAA;IACzC,+EAA2C,CAAA;IAC3C,2FAAuD,CAAA;IACvD,uFAAmD,CAAA;AACrD,CAAC,EANW,gCAAgC,gDAAhC,gCAAgC,QAM3C"}
1
+ {"version":3,"file":"oht.types.js","sourceRoot":"","sources":["../../types/oht.types.ts"],"names":[],"mappings":";;;AA2OA,IAAY,GAIX;AAJD,WAAY,GAAG;IACb,oBAAa,CAAA;IACb,wBAAiB,CAAA;IACjB,sBAAe,CAAA;AACjB,CAAC,EAJW,GAAG,mBAAH,GAAG,QAId;AAED,IAAY,UAGX;AAHD,WAAY,UAAU;IACpB,qDAAuC,CAAA;IACvC,6BAAe,CAAA;AACjB,CAAC,EAHW,UAAU,0BAAV,UAAU,QAGrB;AAED,IAAY,0BAYX;AAZD,WAAY,0BAA0B;IACpC,mDAAqB,CAAA;IACrB,iDAAmB,CAAA;IACnB,uDAAyB,CAAA;IACzB,uDAAyB,CAAA;IACzB,qDAAuB,CAAA;IACvB,qDAAuB,CAAA;IACvB,6CAAe,CAAA;IACf,iDAAmB,CAAA;IACnB,mDAAqB,CAAA;IACrB,mDAAqB,CAAA;IACrB,2DAA6B,CAAA;AAC/B,CAAC,EAZW,0BAA0B,0CAA1B,0BAA0B,QAYrC;AAED,IAAY,kBAGX;AAHD,WAAY,kBAAkB;IAC5B,uDAAiC,CAAA;IACjC,6CAAuB,CAAA;AACzB,CAAC,EAHW,kBAAkB,kCAAlB,kBAAkB,QAG7B;AAED,IAAY,0BAIX;AAJD,WAAY,0BAA0B;IACpC,6CAAe,CAAA;IACf,2DAA6B,CAAA;IAC7B,qDAAuB,CAAA;AACzB,CAAC,EAJW,0BAA0B,0CAA1B,0BAA0B,QAIrC;AAED,IAAY,kBAOX;AAPD,WAAY,kBAAkB;IAC5B,yCAAmB,CAAA;IACnB,yCAAmB,CAAA;IACnB,+CAAyB,CAAA;IACzB,mCAAa,CAAA;IACb,qCAAe,CAAA;IACf,2CAAqB,CAAA;AACvB,CAAC,EAPW,kBAAkB,kCAAlB,kBAAkB,QAO7B;AAED,IAAY,YASX;AATD,WAAY,YAAY;IACtB,6CAA6B,CAAA;IAC7B,mDAAmC,CAAA;IACnC,yDAAyC,CAAA;IACzC,2DAA2C,CAAA;IAC3C,2DAA2C,CAAA;IAC3C,+DAA+C,CAAA;IAC/C,2DAA2C,CAAA;IAC3C,mDAAmC,CAAA;AACrC,CAAC,EATW,YAAY,4BAAZ,YAAY,QASvB;AA4CD,IAAY,YAIX;AAJD,WAAY,YAAY;IACtB,+BAAe,CAAA;IACf,iCAAiB,CAAA;IACjB,2BAAW,CAAA;AACb,CAAC,EAJW,YAAY,4BAAZ,YAAY,QAIvB;AAsCD,IAAY,kBAIX;AAJD,WAAY,kBAAkB;IAC5B,6CAAuB,CAAA;IACvB,2CAAqB,CAAA;IACrB,uDAAiC,CAAA;AACnC,CAAC,EAJW,kBAAkB,kCAAlB,kBAAkB,QAI7B;AAED,IAAY,sBAOX;AAPD,WAAY,sBAAsB;IAChC,+CAAqB,CAAA;IACrB,+CAAqB,CAAA;IACrB,4EAAkD,CAAA;IAClD,4EAAkD,CAAA;IAClD,4DAAkC,CAAA;IAClC,2CAAiB,CAAA;AACnB,CAAC,EAPW,sBAAsB,sCAAtB,sBAAsB,QAOjC;AAED,IAAY,WAGX;AAHD,WAAY,WAAW;IACrB,wBAAS,CAAA;IACT,sCAAuB,CAAA;AACzB,CAAC,EAHW,WAAW,2BAAX,WAAW,QAGtB;AAED,IAAY,kCAGX;AAHD,WAAY,kCAAkC;IAC5C,6DAAuB,CAAA;IACvB,iEAA2B,CAAA;AAC7B,CAAC,EAHW,kCAAkC,kDAAlC,kCAAkC,QAG7C;AAED,IAAY,gCAMX;AAND,WAAY,gCAAgC;IAC1C,2DAAuB,CAAA;IACvB,6EAAyC,CAAA;IACzC,+EAA2C,CAAA;IAC3C,2FAAuD,CAAA;IACvD,uFAAmD,CAAA;AACrD,CAAC,EANW,gCAAgC,gDAAhC,gCAAgC,QAM3C"}
package/dist/util-ts/apiUtils.d.ts CHANGED
@@ -1,4 +1,4 @@
1
- export declare function makeApiCallWithRetry(method: string, url: string, data: any, ohtCoreApiKey: string | undefined, retries?: number): Promise<import("axios").AxiosResponse<any, any>>;
1
+ export declare function makeApiCallWithRetry(method: string, url: string, data: any, ohtCoreApiKey: string | undefined, retries?: number): Promise<import("axios").AxiosResponse<any, any, {}>>;
2
2
  export declare function parseErrorObj(resp: any): {
3
3
  message: any;
4
4
  config: any;
package/dist/util-ts/dataUtils.d.ts CHANGED
@@ -1,6 +1,13 @@
1
- import { UnknownMeasurementsBulk } from '../types/oht.types';
1
+ import { UnknownMeasurementsBulk, Exam, BackendBiomarkerMapping } from '../types/oht.types';
2
2
  export declare function isBiomarkerValueNumerical(biomarker: any): boolean;
3
3
  export declare function isBiomarkerExternalNoVisualRange(biomarker: any): boolean;
4
4
  export declare const extractValue: (obj: any, position?: string) => any;
5
5
  export declare const getMappedBiomarkers: (partnerId: string, ohtCoreApiKey: string) => Promise<any>;
6
6
  export declare const updatePartnerCustomParserUnmappedLabKeys: (partnerId: string, unknownMeasurementsBulk: UnknownMeasurementsBulk, ohtCoreApiKey: string) => Promise<void>;
7
+ /**
8
+ * Processes appended biomarker mappings by extracting values from additional labKeys
9
+ * @param exams - Array of exam objects to search
10
+ * @param labKeys - Array of labKey configurations with extraction paths
11
+ * @returns String with extracted values from paths
12
+ */
13
+ export declare function processAppendedMappings(exams: Exam[], labKeys: BackendBiomarkerMapping['annotationConfig']['labKeys']): string;
package/dist/util-ts/dataUtils.js CHANGED
@@ -6,6 +6,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
6
6
  exports.updatePartnerCustomParserUnmappedLabKeys = exports.getMappedBiomarkers = exports.extractValue = void 0;
7
7
  exports.isBiomarkerValueNumerical = isBiomarkerValueNumerical;
8
8
  exports.isBiomarkerExternalNoVisualRange = isBiomarkerExternalNoVisualRange;
9
+ exports.processAppendedMappings = processAppendedMappings;
9
10
  const apiUtils_1 = require("./apiUtils");
10
11
  const pinoLogger_1 = __importDefault(require("./pinoLogger"));
11
12
  const logger = (0, pinoLogger_1.default)();
@@ -46,4 +47,83 @@ const updatePartnerCustomParserUnmappedLabKeys = async (partnerId, unknownMeasur
46
47
  logger.info(response.data, `Resp: POST /v1/customparser/partners/${partnerId}/unmapped/bulk`);
47
48
  };
48
49
  exports.updatePartnerCustomParserUnmappedLabKeys = updatePartnerCustomParserUnmappedLabKeys;
50
+ /**
51
+ * Processes appended biomarker mappings by extracting values from additional labKeys
52
+ * @param exams - Array of exam objects to search
53
+ * @param labKeys - Array of labKey configurations with extraction paths
54
+ * @returns String with extracted values from paths
55
+ */
56
+ function processAppendedMappings(exams, labKeys) {
57
+ const extractedValues = [];
58
+ if (!exams || !labKeys) {
59
+ return '';
60
+ }
61
+ logger.info(`Processing appended mapping with ${labKeys.length} additional labKeys`);
62
+ // Process each additional labKey
63
+ for (const additionalLabKey of labKeys) {
64
+ const additionalExam = exams.find(exam => exam.ohtExam.labKey === additionalLabKey.labKey);
65
+ if (!additionalExam) {
66
+ logger.warn(`Additional labKey ${additionalLabKey.labKey} not found for appended mapping`);
67
+ continue;
68
+ }
69
+ // Process extraction paths for this labKey
70
+ const labKeyValues = [];
71
+ for (const extractionPath of additionalLabKey.extractionPaths) {
72
+ // Extract value from path
73
+ const extractedValue = getNestedValue(additionalExam.ohtExam, extractionPath.path);
74
+ // Use defaultValue if no value extracted
75
+ const finalValue = extractedValue || extractionPath.defaultValue;
76
+ // Check if required path has no value and no default
77
+ if (extractionPath.required && !finalValue) {
78
+ const errorMessage = `appended biomarker information for ${additionalLabKey.labKey} not found`;
79
+ logger.warn(`Required extraction path ${extractionPath.path} not found for labKey ${additionalLabKey.labKey}`);
80
+ labKeyValues.push(errorMessage);
81
+ continue;
82
+ }
83
+ // Skip if no value and not required
84
+ if (!finalValue) {
85
+ continue;
86
+ }
87
+ // Apply format if specified
88
+ let formattedValue = finalValue;
89
+ if (extractionPath.format) {
90
+ formattedValue = extractionPath.format.replace('%s', finalValue);
91
+ }
92
+ labKeyValues.push(formattedValue);
93
+ }
94
+ // Combine values for this labKey with prefix and suffix
95
+ if (labKeyValues.length > 0) {
96
+ let combinedValue = labKeyValues.join(' ');
97
+ // Add prefix if specified
98
+ if (additionalLabKey.prefix) {
99
+ combinedValue = additionalLabKey.prefix + combinedValue;
100
+ }
101
+ // Add suffix if specified
102
+ if (additionalLabKey.suffix) {
103
+ combinedValue = combinedValue + additionalLabKey.suffix;
104
+ }
105
+ extractedValues.push(combinedValue);
106
+ }
107
+ }
108
+ return extractedValues.join(' ');
109
+ }
110
+ /**
111
+ * Helper function to get nested values from objects using dot notation
112
+ * @param obj - Object to extract value from
113
+ * @param path - Dot notation path (e.g., "description", "value", "unit")
114
+ * @returns Extracted value or null
115
+ */
116
+ function getNestedValue(obj, path) {
117
+ const keys = path.split('.');
118
+ let current = obj;
119
+ for (const key of keys) {
120
+ if (current && typeof current === 'object' && key in current) {
121
+ current = current[key];
122
+ }
123
+ else {
124
+ return null;
125
+ }
126
+ }
127
+ return current ? String(current) : null;
128
+ }
49
129
  //# sourceMappingURL=dataUtils.js.map
package/dist/util-ts/dataUtils.js.map CHANGED
@@ -1 +1 @@
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1
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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@openhealth/oht-custom-parser-lib",
3
- "version": "0.2.39",
3
+ "version": "0.2.41",
4
4
  "description": "Shared nodejs lib with with reusable functions",
5
5
  "main": "dist/index.js",
6
6
  "types": "dist/index.d.ts",