@openhealth/oht-custom-parser-lib 0.2.25 → 0.2.27
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/dist/index.d.ts
CHANGED
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@@ -11,3 +11,4 @@ export { extractValue, isBiomarkerValueNumerical, isBiomarkerExternalNoVisualRan
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export { readFileFromBucket, uploadFileBufferToGCS } from './util-ts/googleStorageUtils';
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export { default as pinoLogger } from './util-ts/pinoLogger';
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export { getGreaterThanPatterns, getLowerThanPatterns } from './util-ts/regexUtils';
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14
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+
export { getMappedBiomarkers, } from './util-ts/dataUtils';
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package/dist/index.js
CHANGED
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@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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return (mod && mod.__esModule) ? mod : { "default": mod };
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};
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Object.defineProperty(exports, "__esModule", { value: true });
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6
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-
exports.getLowerThanPatterns = exports.getGreaterThanPatterns = exports.pinoLogger = exports.uploadFileBufferToGCS = exports.readFileFromBucket = exports.isBiomarkerExternalNoVisualRange = exports.isBiomarkerValueNumerical = exports.extractValue = exports.parseErrorObj = exports.makeApiCallWithRetry = exports.UploadType = exports.Sex = exports.DataImportFileUploadStatus = exports.BiomarkerValueType = exports.MeasurementValueComparator = exports.DigitizationStatus = exports.PipelineStep = exports.ReferenceRangeType = exports.BiomarkerCompatibility = exports.ManualCheck = exports.AcfBiomarkerGenericDisclaimerLogic = exports.AcfBiomarkerRangeAnnotationCheck = exports.unitSynonyms = exports.generateBIMessages = exports.publishToTopic = exports.aggregateBiMessages = exports.aggregateMessages = exports.sendMessageToSlack = exports.getSlackFileIssueNotificationMessage = exports.extractValueFromGreaterLowerThan = exports.extractUnit = exports.getRangeFromPositionAndRegex = exports.parseExamValue = exports.extractReferenceAnnotation = exports.extractReferenceRanges = exports.checkValueForPlausibleValues = exports.ohtMeasurementsExtractor = exports.postFileUploadSetStatus = exports.queryFileUploadsWithFilters = exports.handleRejection = exports.isPatientAgeValid = exports.parseGender = exports.parseExternalPatientId = exports.postDataImportFileUploadToCore = void 0;
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6
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+
exports.getMappedBiomarkers = exports.getLowerThanPatterns = exports.getGreaterThanPatterns = exports.pinoLogger = exports.uploadFileBufferToGCS = exports.readFileFromBucket = exports.isBiomarkerExternalNoVisualRange = exports.isBiomarkerValueNumerical = exports.extractValue = exports.parseErrorObj = exports.makeApiCallWithRetry = exports.UploadType = exports.Sex = exports.DataImportFileUploadStatus = exports.BiomarkerValueType = exports.MeasurementValueComparator = exports.DigitizationStatus = exports.PipelineStep = exports.ReferenceRangeType = exports.BiomarkerCompatibility = exports.ManualCheck = exports.AcfBiomarkerGenericDisclaimerLogic = exports.AcfBiomarkerRangeAnnotationCheck = exports.unitSynonyms = exports.generateBIMessages = exports.publishToTopic = exports.aggregateBiMessages = exports.aggregateMessages = exports.sendMessageToSlack = exports.getSlackFileIssueNotificationMessage = exports.extractValueFromGreaterLowerThan = exports.extractUnit = exports.getRangeFromPositionAndRegex = exports.parseExamValue = exports.extractReferenceAnnotation = exports.extractReferenceRanges = exports.checkValueForPlausibleValues = exports.ohtMeasurementsExtractor = exports.postFileUploadSetStatus = exports.queryFileUploadsWithFilters = exports.handleRejection = exports.isPatientAgeValid = exports.parseGender = exports.parseExternalPatientId = exports.postDataImportFileUploadToCore = void 0;
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// ### SERVICES ###
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var reportCreator_service_1 = require("./service/reportCreator.service");
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Object.defineProperty(exports, "postDataImportFileUploadToCore", { enumerable: true, get: function () { return reportCreator_service_1.postDataImportFileUploadToCore; } });
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@@ -63,4 +63,6 @@ Object.defineProperty(exports, "pinoLogger", { enumerable: true, get: function (
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var regexUtils_1 = require("./util-ts/regexUtils");
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Object.defineProperty(exports, "getGreaterThanPatterns", { enumerable: true, get: function () { return regexUtils_1.getGreaterThanPatterns; } });
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Object.defineProperty(exports, "getLowerThanPatterns", { enumerable: true, get: function () { return regexUtils_1.getLowerThanPatterns; } });
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+
var dataUtils_2 = require("./util-ts/dataUtils");
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Object.defineProperty(exports, "getMappedBiomarkers", { enumerable: true, get: function () { return dataUtils_2.getMappedBiomarkers; } });
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//# sourceMappingURL=index.js.map
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package/dist/index.js.map
CHANGED
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../index.ts"],"names":[],"mappings":";;;;;;AAAA,mBAAmB;AACnB,yEAEyC;AADvC,uIAAA,8BAA8B,OAAA;AAEhC,mFAO8C;AAN5C,oIAAA,sBAAsB,OAAA;AACtB,yHAAA,WAAW,OAAA;AACX,+HAAA,iBAAiB,OAAA;AACjB,6HAAA,eAAe,OAAA;AACf,yIAAA,2BAA2B,OAAA;AAC3B,qIAAA,uBAAuB,OAAA;AAEzB,+FASoD;AARlD,4IAAA,wBAAwB,OAAA;AACxB,gJAAA,4BAA4B,OAAA;AAC5B,0IAAA,sBAAsB,OAAA;AACtB,8IAAA,0BAA0B,OAAA;AAC1B,kIAAA,cAAc,OAAA;AACd,gJAAA,4BAA4B,OAAA;AAC5B,+HAAA,WAAW,OAAA;AACX,oJAAA,gCAAgC,OAAA;AAElC,yEAEyC;AADvC,6IAAA,oCAAoC,OAAA;AAAE,2HAAA,kBAAkB,OAAA;AAE1D,yEAKyC;AAJvC,0HAAA,iBAAiB,OAAA;AACjB,4HAAA,mBAAmB,OAAA;AACnB,uHAAA,cAAc,OAAA;AACd,2HAAA,kBAAkB,OAAA;AAGpB,gBAAgB;AAChB,mEAWqC;AAFnC,mHAAA,YAAY,OAAA;AAGd,+CAiC2B;AAhCzB,6HAAA,gCAAgC,OAAA;AAChC,+HAAA,kCAAkC,OAAA;AAClC,wGAAA,WAAW,OAAA;AACX,mHAAA,sBAAsB,OAAA;AACtB,+GAAA,kBAAkB,OAAA;AAOlB,yGAAA,YAAY,OAAA;AACZ,+GAAA,kBAAkB,OAAA;AAClB,uHAAA,0BAA0B,OAAA;AAC1B,+GAAA,kBAAkB,OAAA;AAClB,uHAAA,0BAA0B,OAAA;AAC1B,gGAAA,GAAG,OAAA;AAeH,uGAAA,UAAU,OAAA;AAIZ,kBAAkB;AAClB,+CAAuE;AAA/D,gHAAA,oBAAoB,OAAA;AAAE,yGAAA,aAAa,OAAA;AAC3C,iDAA8G;AAAtG,yGAAA,YAAY,OAAA;AAAE,sHAAA,yBAAyB,OAAA;AAAE,6HAAA,gCAAgC,OAAA;AACjF,mEAAuF;AAA/E,wHAAA,kBAAkB,OAAA;AAAE,2HAAA,qBAAqB,OAAA;AACjD,mDAA2D;AAAnD,yHAAA,OAAO,OAAc;AAC7B,mDAAkF;AAA1E,oHAAA,sBAAsB,OAAA;AAAE,kHAAA,oBAAoB,OAAA"}
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+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../index.ts"],"names":[],"mappings":";;;;;;AAAA,mBAAmB;AACnB,yEAEyC;AADvC,uIAAA,8BAA8B,OAAA;AAEhC,mFAO8C;AAN5C,oIAAA,sBAAsB,OAAA;AACtB,yHAAA,WAAW,OAAA;AACX,+HAAA,iBAAiB,OAAA;AACjB,6HAAA,eAAe,OAAA;AACf,yIAAA,2BAA2B,OAAA;AAC3B,qIAAA,uBAAuB,OAAA;AAEzB,+FASoD;AARlD,4IAAA,wBAAwB,OAAA;AACxB,gJAAA,4BAA4B,OAAA;AAC5B,0IAAA,sBAAsB,OAAA;AACtB,8IAAA,0BAA0B,OAAA;AAC1B,kIAAA,cAAc,OAAA;AACd,gJAAA,4BAA4B,OAAA;AAC5B,+HAAA,WAAW,OAAA;AACX,oJAAA,gCAAgC,OAAA;AAElC,yEAEyC;AADvC,6IAAA,oCAAoC,OAAA;AAAE,2HAAA,kBAAkB,OAAA;AAE1D,yEAKyC;AAJvC,0HAAA,iBAAiB,OAAA;AACjB,4HAAA,mBAAmB,OAAA;AACnB,uHAAA,cAAc,OAAA;AACd,2HAAA,kBAAkB,OAAA;AAGpB,gBAAgB;AAChB,mEAWqC;AAFnC,mHAAA,YAAY,OAAA;AAGd,+CAiC2B;AAhCzB,6HAAA,gCAAgC,OAAA;AAChC,+HAAA,kCAAkC,OAAA;AAClC,wGAAA,WAAW,OAAA;AACX,mHAAA,sBAAsB,OAAA;AACtB,+GAAA,kBAAkB,OAAA;AAOlB,yGAAA,YAAY,OAAA;AACZ,+GAAA,kBAAkB,OAAA;AAClB,uHAAA,0BAA0B,OAAA;AAC1B,+GAAA,kBAAkB,OAAA;AAClB,uHAAA,0BAA0B,OAAA;AAC1B,gGAAA,GAAG,OAAA;AAeH,uGAAA,UAAU,OAAA;AAIZ,kBAAkB;AAClB,+CAAuE;AAA/D,gHAAA,oBAAoB,OAAA;AAAE,yGAAA,aAAa,OAAA;AAC3C,iDAA8G;AAAtG,yGAAA,YAAY,OAAA;AAAE,sHAAA,yBAAyB,OAAA;AAAE,6HAAA,gCAAgC,OAAA;AACjF,mEAAuF;AAA/E,wHAAA,kBAAkB,OAAA;AAAE,2HAAA,qBAAqB,OAAA;AACjD,mDAA2D;AAAnD,yHAAA,OAAO,OAAc;AAC7B,mDAAkF;AAA1E,oHAAA,sBAAsB,OAAA;AAAE,kHAAA,oBAAoB,OAAA;AACpD,iDAA0D;AAAlD,gHAAA,mBAAmB,OAAA"}
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@@ -393,10 +393,12 @@ async function ohtMeasurementsExtractor(labToOhtContract, ohtCoreApiKey) {
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const value = labToOhtMapper?.unknownMeasurement?.value ?? '';
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const unit = labToOhtMapper?.unknownMeasurement?.unit ?? '';
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const annotation = labToOhtMapper?.unknownMeasurement?.annotation ?? '';
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const dataOrigin = labToOhtMapper?.unknownMeasurement?.dataOrigin ?? { path: '' };
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const jsonBlob = labToOhtMapper?.unknownMeasurement?.jsonBlob ?? '';
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const originalName = labToOhtMapper?.unknownMeasurement?.originalName ?? '';
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const labKey = labToOhtMapper.labKey;
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const dataOrigin = labToOhtMapper?.unknownMeasurement?.dataOrigin
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? [labToOhtMapper?.unknownMeasurement?.dataOrigin]
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: [{ path: '' }];
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const unknownMeasurement = {
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labKey: labKey,
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biomarkerName: biomarkerName,
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@@ -1 +1 @@
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-
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1
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+
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@@ -144,7 +144,7 @@ export interface UnknownMeasurement {
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annotation?: string;
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isAiParsed?: boolean;
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146
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isHumanParsed?: boolean;
|
|
147
|
-
dataOrigin?: DataOrigin;
|
|
147
|
+
dataOrigin?: DataOrigin[];
|
|
148
148
|
originalName?: string;
|
|
149
149
|
}
|
|
150
150
|
export interface UnmappedLabKey extends UnknownMeasurement {
|