@openhealth/oht-custom-parser-lib 0.2.19 → 0.2.21
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/service/reportCreator.service.js +24 -0
- package/dist/service/reportCreator.service.js.map +1 -1
- package/dist/types/custom-parser.types.js +60 -1
- package/dist/types/custom-parser.types.js.map +1 -1
- package/dist/types/oht.types.d.ts +2 -0
- package/dist/types/oht.types.js.map +1 -1
- package/package.json +1 -1
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@@ -90,6 +90,30 @@ async function postDataImportFileUploadToCore(dataImportFileUpload, rejectedStat
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const ohtCoreUpdateFileUploadUrl = `${OHT_CORE_URL}/v1/file-uploads/${dataImportFileUpload.id}/update`;
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const ohtCoreFileUploadUrl = `${OHT_CORE_URL}/v1/file-uploads/${dataImportFileUpload.id}`;
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const ohtCoreDigitalizationUrl = `${OHT_CORE_URL}/v1/file-uploads/${dataImportFileUpload.id}/digitalization`;
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// Get the owner user binding to update the user with patient information
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const userBindingUrl = `${OHT_CORE_URL}/v1/useruploadbinding/useruploadbindings/${dataImportFileUpload.id}`;
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const userBindingResponse = await makeApiCallWithRetry('get', userBindingUrl, null, ohtCoreApiKey);
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logger.info({ response: userBindingResponse.data }, `Resp: GET BINDING /v1/useruploadbinding/useruploadbindings/${dataImportFileUpload.id}, filename: ${filename}`);
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if (!userBindingResponse?.data?.ownerUserId) {
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logger.error({ response: userBindingResponse?.data }, `ERROR: No ownerUserId found in binding response for fileUploadId: ${dataImportFileUpload.id}, filename: ${filename}`);
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throw new Error(`No ownerUserId found for fileUploadId: ${dataImportFileUpload.id}`);
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}
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const ownerUserId = userBindingResponse.data.ownerUserId;
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// Update the user with patient information
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const userPayload = {
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firstName: dataImportFileUpload?.patientInfo?.firstName ?? '',
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lastName: dataImportFileUpload?.patientInfo?.lastName ?? '',
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email: dataImportFileUpload?.patientInfo?.email ?? '',
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birthdate: dataImportFileUpload?.patientInfo?.birthdate ?? null,
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//externalReference: dataImportFileUpload.externalPatientId ?? '',
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cpf: dataImportFileUpload?.patientInfo?.cpf ?? '',
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sex: dataImportFileUpload?.patientInfo?.sex ?? null,
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gender: dataImportFileUpload?.patientInfo?.gender ?? null,
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socialName: dataImportFileUpload?.patientInfo?.socialName ?? '',
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};
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const userUrl = `${OHT_CORE_URL}/v1/user/users/${ownerUserId}`;
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const userResponse = await makeApiCallWithRetry('patch', userUrl, userPayload, ohtCoreApiKey);
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logger.info({ response: userResponse.data }, `Resp: PATCH USER /v1/users/${ownerUserId}, filename: ${filename}`);
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try {
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const initialResponse = await makeApiCallWithRetry('patch', ohtCoreFileUploadUrl, {
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...dataImportFileUpload,
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"reportCreator.service.js","sourceRoot":"","sources":["../../service/reportCreator.service.ts"],"names":[],"mappings":";;;;;
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1
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{"version":3,"file":"reportCreator.service.js","sourceRoot":"","sources":["../../service/reportCreator.service.ts"],"names":[],"mappings":";;;;;AAiPS,wEAA8B;AAAE,oDAAoB;AAAE,sCAAa;AAjP5E,kDAA0B;AAC1B,4DAAoC;AACpC,kDAA0B;AAC1B,kDAK4B;AAC5B,kDAA0B;AAC1B,uFAA+D;AAC/D,2DAAmC;AACnC,eAAK,CAAC,MAAM,CAAC,2BAAiB,CAAC,CAAC;AAChC,eAAK,CAAC,MAAM,CAAC,aAAG,CAAC,CAAC;AAElB,uEAA+C;AAC/C,MAAM,MAAM,GAAG,IAAA,oBAAU,GAAE,CAAC;AAE5B,oDAA4B;AAC5B,6EAAuE;AACvE,gBAAM,CAAC,MAAM,CAAC,EAAE,IAAI,EAAE,YAAY,EAAE,CAAC,CAAC;AAEtC,MAAM,YAAY,GAAG,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC;AAE9C,MAAM,UAAU,GAAG,IAAI,eAAK,CAAC,KAAK,CAAC;IACjC,SAAS,EAAE,IAAI,EAAE,mDAAmD;IACpE,OAAO,EAAE,KAAK,EAAE,qCAAqC;IACrD,cAAc,EAAE,gBAAgB;CACjC,CAAC,CAAC;AAEH,8BAA8B;AAC9B,MAAM,OAAO,GAAG,IAAI,oBAAU,CAAC;IAC7B,OAAO,EAAE,GAAG,EAAE,6CAA6C;IAC3D,aAAa,EAAE,CAAC,EAAE,mDAAmD;CACtE,CAAC,CAAC;AAEH,6BAA6B;AAC7B,MAAM,WAAW,GAAG,OAAO,CAAC,IAAI,CAAC,KAAK,WACpC,MAAc,EACd,GAAW,EACX,IAAS,EACT,aAAiC;IAEjC,MAAM,UAAU,GAAG,SAAS,aAAa,EAAE,CAAC;IAC5C,MAAM,OAAO,GAAG;QACd,aAAa,EAAE,UAAU;KAC1B,CAAC;IAEF,OAAO,IAAA,eAAK,EAAC;QACX,MAAM;QACN,GAAG;QACH,OAAO;QACP,IAAI;QACJ,UAAU;KACX,CAAC,CAAC;AACL,CAAC,CAAC,CAAC;AAEH,4CAA4C;AAC5C,KAAK,UAAU,oBAAoB,CACjC,MAAc,EACd,GAAW,EACX,IAAS,EACT,aAAiC,EACjC,UAAkB,CAAC;IAEnB,KAAK,IAAI,OAAO,GAAG,CAAC,EAAE,OAAO,IAAI,OAAO,EAAE,OAAO,EAAE,EAAE,CAAC;QACpD,IAAI,CAAC;YACH,OAAO,MAAM,WAAW,CAAC,MAAM,EAAE,GAAG,EAAE,IAAI,EAAE,aAAa,CAAC,CAAC;QAC7D,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,IAAI,OAAO,KAAK,OAAO,EAAE,CAAC;gBACxB,MAAM,KAAK,CAAC;YACd,CAAC;YACD,MAAM,CAAC,IAAI,CAAC,EAAE,MAAM,EAAE,GAAG,EAAE,EAAE,WAAW,OAAO,sBAAsB,CAAC,CAAC;QACzE,CAAC;IACH,CAAC;AACH,CAAC;AAED,SAAS,aAAa,CAAC,IAAS;IAC9B,IAAI,KAAK,GAAG;QACV,OAAO,EAAE,IAAI,CAAC,OAAO,EAAE,sBAAsB;QAC7C,kDAAkD;QAClD,MAAM,EAAE,IAAI,CAAC,MAAM,EAAE,6CAA6C;KACnE,CAAC;IACF,IAAI,IAAI,CAAC,QAAQ,EAAE,CAAC;QAClB,KAAK,GAAG;YACN,GAAG,KAAK;YACR,qEAAqE;YACrE,YAAY,EAAE,IAAI,CAAC,QAAQ,CAAC,IAAI;YAChC,MAAM,EAAE,IAAI,CAAC,QAAQ,CAAC,MAAM;SAC7B,CAAC;IACJ,CAAC;SAAM,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;QACxB,KAAK,GAAG;YACN,GAAG,KAAK;YACR,oDAAoD;YACpD,KAAK,EAAE,IAAI,CAAC,OAAO;SACpB,CAAC;IACF,CAAC;IAED,OAAO,KAAK,CAAC;AACjB,CAAC;AAED,KAAK,UAAU,8BAA8B,CAC3C,oBAA0C,EAC1C,cAAkC,EAClC,YAAgC,EAChC,uBAAgC,EAChC,QAAgB,EAChB,aAAqB;IAErB,IAAI,MAAM,GAAG,uBAAuB;QAClC,CAAC,CAAC,sCAA0B,CAAC,SAAS;QACtC,CAAC,CAAC,sCAA0B,CAAC,UAAU,CAAC;IAE1C,MAAM,WAAW,GAAG,cAAc,IAAI,MAAM,CAAC;IAC7C,MAAM,0BAA0B,GAAG,GAAG,YAAY,oBAAoB,oBAAoB,CAAC,EAAE,SAAS,CAAC;IACvG,MAAM,oBAAoB,GAAG,GAAG,YAAY,oBAAoB,oBAAoB,CAAC,EAAE,EAAE,CAAC;IAC1F,MAAM,wBAAwB,GAAG,GAAG,YAAY,oBAAoB,oBAAoB,CAAC,EAAE,iBAAiB,CAAC;IAE7G,yEAAyE;IACzE,MAAM,cAAc,GAAG,GAAG,YAAY,4CAA4C,oBAAoB,CAAC,EAAE,EAAE,CAAC;IAC5G,MAAM,mBAAmB,GAAG,MAAM,oBAAoB,CACpD,KAAK,EACL,cAAc,EACd,IAAI,EACJ,aAAa,CACd,CAAC;IAEF,MAAM,CAAC,IAAI,CACT,EAAC,QAAQ,EAAE,mBAAmB,CAAC,IAAI,EAAC,EACpC,8DAA8D,oBAAoB,CAAC,EAAE,eAAe,QAAQ,EAAE,CAC/G,CAAC;IAEF,IAAI,CAAC,mBAAmB,EAAE,IAAI,EAAE,WAAW,EAAE,CAAC;QAC5C,MAAM,CAAC,KAAK,CACV,EAAC,QAAQ,EAAE,mBAAmB,EAAE,IAAI,EAAC,EACvC,qEAAqE,oBAAoB,CAAC,EAAE,eAAe,QAAQ,EAAE,CACpH,CAAC;QACF,MAAM,IAAI,KAAK,CAAC,0CAA0C,oBAAoB,CAAC,EAAE,EAAE,CAAC,CAAC;IACvF,CAAC;IAED,MAAM,WAAW,GAAG,mBAAmB,CAAC,IAAI,CAAC,WAAW,CAAC;IAEzD,2CAA2C;IAC3C,MAAM,WAAW,GAAG;QAClB,SAAS,EAAE,oBAAoB,EAAE,WAAW,EAAE,SAAS,IAAI,EAAE;QAC7D,QAAQ,EAAE,oBAAoB,EAAE,WAAW,EAAE,QAAQ,IAAI,EAAE;QAC3D,KAAK,EAAE,oBAAoB,EAAE,WAAW,EAAE,KAAK,IAAI,EAAE;QACrD,SAAS,EAAE,oBAAoB,EAAE,WAAW,EAAE,SAAS,IAAI,IAAI;QAC/D,kEAAkE;QAClE,GAAG,EAAE,oBAAoB,EAAE,WAAW,EAAE,GAAG,IAAI,EAAE;QACjD,GAAG,EAAE,oBAAoB,EAAE,WAAW,EAAE,GAAG,IAAI,IAAI;QACnD,MAAM,EAAE,oBAAoB,EAAE,WAAW,EAAE,MAAM,IAAI,IAAI;QACzD,UAAU,EAAE,oBAAoB,EAAE,WAAW,EAAE,UAAU,IAAI,EAAE;KAChE,CAAC;IAEF,MAAM,OAAO,GAAG,GAAG,YAAY,kBAAkB,WAAW,EAAE,CAAC;IAC/D,MAAM,YAAY,GAAG,MAAM,oBAAoB,CAC7C,OAAO,EACP,OAAO,EACP,WAAW,EACX,aAAa,CACd,CAAC;IAEF,MAAM,CAAC,IAAI,CACT,EAAC,QAAQ,EAAE,YAAY,CAAC,IAAI,EAAC,EAC7B,8BAA8B,WAAW,eAAe,QAAQ,EAAE,CACnE,CAAC;IAEF,IAAI,CAAC;QACH,MAAM,eAAe,GAAG,MAAM,oBAAoB,CAChD,OAAO,EACP,oBAAoB,EACpB;YACE,GAAG,oBAAoB;YACvB,MAAM,EAAE,WAAW;YACnB,YAAY;YACZ,cAAc,EAAE;gBACd,GAAG,oBAAoB,CAAC,cAAc;gBACtC,YAAY,EAAE,wBAAY,CAAC,eAAe;aAC3C;SACF,EACD,aAAa,CACd,CAAC;QACF,MAAM,CAAC,IAAI,CACT,EAAE,QAAQ,EAAE,eAAe,CAAC,IAAI,EAAE,EAClC,uBAAuB,WAAW,IAAI,oBAAoB,eAAe,QAAQ,EAAE,CACpF,CAAC;QAEF,IAAI,uBAAuB,IAAI,cAAc,KAAK,SAAS,EAAE,CAAC;YAC5D,IAAI,oBAAoB,EAAE,UAAU,EAAE,MAAM,GAAG,CAAC,EAAE,CAAC;gBACjD,qFAAqF;gBACrF,MAAM,oBAAoB,CACxB,MAAM,EACN,0BAA0B,EAC1B,EAAE,EACF,aAAa,CACd,CAAC;gBACF,OAAO,IAAI,CAAC;YACd,CAAC;iBAAM,CAAC;gBACN,OAAO,MAAM,IAAA,oDAAuB,EAClC;oBACE,MAAM,EAAE,sCAA0B,CAAC,KAAK;oBACxC,cAAc,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,eAAK,CAAC,GAAG,EAAE,EAAE;iBAC7D,EACD,oBAAoB,CAAC,EAAE,EACvB,QAAQ,EACR,aAAa,CACd,CAAC;YACJ,CAAC;QACH,CAAC;QACD,MAAM,CAAC,IAAI,CACT;YACE,uBAAuB;YACvB,cAAc;YACd,eAAe,EAAE,eAAe;SACjC,EACD,4CAA4C,oBAAoB,CAAC,EAAE,eAAe,QAAQ,EAAE,CAC7F,CAAC;QAEF,OAAO,eAAe,EAAE,IAAI,CAAC;IAC/B,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,MAAM,WAAW,GAAG,aAAa,CAAC,KAAK,CAAC,CAAC;QACzC,MAAM,CAAC,KAAK,CACV,EAAE,WAAW,EAAE,IAAI,EAAE,WAAW,EAAE,EAClC,mCAAmC,oBAAoB,cAAc,QAAQ,EAAE,CAChF,CAAC;QACF,2BAA2B;QAC3B,MAAM,oBAAoB,CACxB,OAAO,EACP,wBAAwB,EACxB;YACE,MAAM,EAAE,8BAAkB,CAAC,KAAK;YAChC,YAAY,EAAE,wBAAY,CAAC,qBAAqB;YAChD,gBAAgB,EAAE,YAAY;SAC/B,EACD,aAAa,CACd,CAAC;QACF,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC"}
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@@ -16,7 +16,6 @@ exports.unitSynonyms = {
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'miu/ ml': 'mIU/mL',
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'mui/ml': 'mIU/mL',
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'ml/min/1,73m2': 'mL/min/1,73m2',
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'ml/min': 'mL/min/1,73m2',
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'seg': 's',
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'NA': 'None',
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'na': 'None',
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@@ -42,5 +41,65 @@ exports.unitSynonyms = {
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'mm1H': 'mm/h',
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'mm/1H': 'mm/h',
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'mm 1h': 'mm/h',
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'10^6/µl': '10⁶/µL',
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'µlU/mL': 'µIU/mL',
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'µlu/ml': 'µIU/mL',
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'tsd/µl': '1000/µL',
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'mio/µl': '10^6/µL',
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// synonyms entry from Fred's list
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'μg/dl': 'µg/dL',
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'ng/ml': 'ng/mL',
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'Mg/dl': 'mg/dL',
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'iu/l': 'IU/L',
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'IU/l': 'IU/L',
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'U/l': 'IU/L',
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'U/L': 'IU/L',
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'µiu/ml': 'µIU/mL',
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'µIU/ml': 'µIU/mL',
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'miu/ml': 'mIU/mL',
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'mUI/ml': 'mIU/mL',
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'milhões/mm³': '10^6/µL',
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'milh./mm³': '10^6/µL',
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'millions/mm³': '10^6/µL',
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'million/mm³': '10^6/µL',
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'million/mm3': '10^6/µL',
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'millions/mm3': '10^6/µL',
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'10^6/ul': '10^6/µL',
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'x10^6/µl': '10^6/µL',
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'10⁶/µl': '10^6/µL',
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'x10^3 µl': '10^3/µL',
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'10e3/µl': '10^3/µL',
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'10³/µl': '10^3/µL',
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'ml/min/1.73m2': 'mL/min/1.73m²',
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'mL/min/1,73 m2': 'mL/min/1.73m²',
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'mL/min/1.73 m²': 'mL/min/1.73m²',
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'mL/min/1.73m2': 'mL/min/1.73m²',
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'mL/min/1,73m²': 'mL/min/1.73m²',
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'ml/min': 'mL/min',
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'mL/min': 'mL/min',
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'ml/por minuto': 'mL/min',
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'ml/pro Minute': 'mL/min',
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'ml/per minute': 'mL/min',
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'mL/por minuto': 'mL/min',
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'mL/pro Minute': 'mL/min',
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'mL/per minute': 'mL/min',
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'ml/por minuto/1.73m2': 'mL/min/1.73m²',
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'ml/pro Minute/1.73m2': 'mL/min/1.73m²',
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'ml/per minute/1.73m2': 'mL/min/1.73m²',
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'sec': 's',
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'sg': 's',
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'sek': 's',
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'segundo': 's',
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'segundos': 's',
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'sekunde': 's',
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'mg/g creat': 'mg/g(Crea)',
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'mg/g kreatinin': 'mg/g(Crea)',
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'mg/g creatinine': 'mg/g(Crea)',
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'um3': 'µm³',
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'um^3': 'µm³',
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'µm^3': 'µm³',
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'micrometers cubed': 'µm³',
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'n/a': 'None',
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'N/A': 'None',
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};
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//# sourceMappingURL=custom-parser.types.js.map
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{"version":3,"file":"custom-parser.types.js","sourceRoot":"","sources":["../../types/custom-parser.types.ts"],"names":[],"mappings":";;;AAIa,QAAA,YAAY,GAA2B;IAClD,KAAK,EAAE,MAAM;IACb,MAAM,EAAE,MAAM;IACd,OAAO,EAAE,MAAM;IACf,MAAM,EAAE,MAAM;IACd,OAAO,EAAE,OAAO;IAChB,WAAW,EAAE,aAAa;IAC1B,YAAY,EAAE,aAAa;IAC3B,IAAI,EAAE,KAAK;IACX,MAAM,EAAE,KAAK;IACb,UAAU,EAAE,SAAS;IACrB,SAAS,EAAE,QAAQ;IACnB,SAAS,EAAE,QAAQ;IACnB,QAAQ,EAAE,QAAQ;IAClB,eAAe,EAAE,eAAe;IAChC,
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@@ -1 +1 @@
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1
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