@openhealth/oht-custom-parser-lib 0.1.13 → 0.1.15
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/service/auxiliaryFunctions.service.js +2 -0
- package/dist/service/auxiliaryFunctions.service.js.map +1 -1
- package/dist/service/ohtMeasurementsExtractor.service.js +1 -0
- package/dist/service/ohtMeasurementsExtractor.service.js.map +1 -1
- package/dist/service/reportCreator.service.js +2 -2
- package/dist/service/reportCreator.service.js.map +1 -1
- package/dist/types/oht.types.d.ts +8 -4
- package/dist/types/oht.types.js +8 -4
- package/dist/types/oht.types.js.map +1 -1
- package/package.json +1 -1
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@@ -26,9 +26,11 @@ function parseExternalPatientId(patientExternalId) {
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function parseGender(patientGender) {
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const gender = patientGender?.toLowerCase();
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switch (gender) {
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+
case 'm':
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case 'masculino':
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case 'male':
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return { sex: oht_types_1.Sex.MALE, isGenderCorrectlyParsed: true };
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+
case 'f':
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case 'feminino':
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case 'female':
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return { sex: oht_types_1.Sex.FEMALE, isGenderCorrectlyParsed: true };
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"auxiliaryFunctions.service.js","sourceRoot":"","sources":["../../service/auxiliaryFunctions.service.ts"],"names":[],"mappings":";;;;;
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1
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+
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@@ -1 +1 @@
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1
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-
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1
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+
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|
@@ -93,7 +93,7 @@ async function postDataImportFileUploadToCore(dataImportFileUpload, rejectedStat
|
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|
93
93
|
rejectReason,
|
|
94
94
|
digitalization: {
|
|
95
95
|
...dataImportFileUpload.digitalization,
|
|
96
|
-
pipelineStep:
|
|
96
|
+
pipelineStep: oht_types_1.PipelineStep.SENDING_RESULTS
|
|
97
97
|
},
|
|
98
98
|
}, ohtCoreApiKey);
|
|
99
99
|
logger.info({ response: initialResponse }, `Resp: PATCH status: ${patchStatus} ${ohtCoreFileUploadUrl}, filename: ${filename}`);
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@@ -120,7 +120,7 @@ async function postDataImportFileUploadToCore(dataImportFileUpload, rejectedStat
|
|
|
120
120
|
// set digitalization error
|
|
121
121
|
await makeApiCallWithRetry('patch', ohtCoreDigitalizationUrl, {
|
|
122
122
|
status: oht_types_1.DigitizationStatus.ERROR,
|
|
123
|
-
pipelineStep: oht_types_1.PipelineStep.
|
|
123
|
+
pipelineStep: oht_types_1.PipelineStep.EXTRACTING_BIOMARKERS,
|
|
124
124
|
pipelineStepData: rejectReason,
|
|
125
125
|
}, ohtCoreApiKey);
|
|
126
126
|
return null; // TODO check which dataImportFileUpload should we return
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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1
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|
@@ -188,10 +188,14 @@ export declare enum DigitizationStatus {
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|
|
188
188
|
DISABLED = "DISABLED"
|
|
189
189
|
}
|
|
190
190
|
export declare enum PipelineStep {
|
|
191
|
-
|
|
192
|
-
|
|
193
|
-
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194
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-
|
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191
|
+
LOADING_FILE = "LOADING_FILE",
|
|
192
|
+
EXTRACTING_TEXT = "EXTRACTING_TEXT",
|
|
193
|
+
DETECTING_LANGUAGE = "DETECTING_LANGUAGE",
|
|
194
|
+
EXTRACTING_METADATA = "EXTRACTING_METADATA",
|
|
195
|
+
FACTORING_EXTRACTOR = "FACTORING_EXTRACTOR",
|
|
196
|
+
EXTRACTING_BIOMARKERS = "EXTRACTING_BIOMARKERS",
|
|
197
|
+
MATCHING_BIOMARKERS = "MATCHING_BIOMARKERS",
|
|
198
|
+
SENDING_RESULTS = "SENDING_RESULTS"
|
|
195
199
|
}
|
|
196
200
|
export type Biomarker = {
|
|
197
201
|
id: number;
|
package/dist/types/oht.types.js
CHANGED
|
@@ -43,10 +43,14 @@ var DigitizationStatus;
|
|
|
43
43
|
})(DigitizationStatus || (exports.DigitizationStatus = DigitizationStatus = {}));
|
|
44
44
|
var PipelineStep;
|
|
45
45
|
(function (PipelineStep) {
|
|
46
|
-
PipelineStep["
|
|
47
|
-
PipelineStep["
|
|
48
|
-
PipelineStep["
|
|
49
|
-
PipelineStep["
|
|
46
|
+
PipelineStep["LOADING_FILE"] = "LOADING_FILE";
|
|
47
|
+
PipelineStep["EXTRACTING_TEXT"] = "EXTRACTING_TEXT";
|
|
48
|
+
PipelineStep["DETECTING_LANGUAGE"] = "DETECTING_LANGUAGE";
|
|
49
|
+
PipelineStep["EXTRACTING_METADATA"] = "EXTRACTING_METADATA";
|
|
50
|
+
PipelineStep["FACTORING_EXTRACTOR"] = "FACTORING_EXTRACTOR";
|
|
51
|
+
PipelineStep["EXTRACTING_BIOMARKERS"] = "EXTRACTING_BIOMARKERS";
|
|
52
|
+
PipelineStep["MATCHING_BIOMARKERS"] = "MATCHING_BIOMARKERS";
|
|
53
|
+
PipelineStep["SENDING_RESULTS"] = "SENDING_RESULTS";
|
|
50
54
|
})(PipelineStep || (exports.PipelineStep = PipelineStep = {}));
|
|
51
55
|
var GoLiveStatus;
|
|
52
56
|
(function (GoLiveStatus) {
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"oht.types.js","sourceRoot":"","sources":["../../types/oht.types.ts"],"names":[],"mappings":";;;AA0KA,IAAY,GAIX;AAJD,WAAY,GAAG;IACb,oBAAa,CAAA;IACb,wBAAiB,CAAA;IACjB,sBAAe,CAAA;AACjB,CAAC,EAJW,GAAG,mBAAH,GAAG,QAId;AAED,IAAY,0BAYX;AAZD,WAAY,0BAA0B;IACpC,mDAAqB,CAAA;IACrB,iDAAmB,CAAA;IACnB,uDAAyB,CAAA;IACzB,uDAAyB,CAAA;IACzB,qDAAuB,CAAA;IACvB,qDAAuB,CAAA;IACvB,6CAAe,CAAA;IACf,iDAAmB,CAAA;IACnB,mDAAqB,CAAA;IACrB,mDAAqB,CAAA;IACrB,2DAA6B,CAAA;AAC/B,CAAC,EAZW,0BAA0B,0CAA1B,0BAA0B,QAYrC;AAED,IAAY,kBAGX;AAHD,WAAY,kBAAkB;IAC5B,uDAAiC,CAAA;IACjC,6CAAuB,CAAA;AACzB,CAAC,EAHW,kBAAkB,kCAAlB,kBAAkB,QAG7B;AAED,IAAY,0BAIX;AAJD,WAAY,0BAA0B;IACpC,6CAAe,CAAA;IACf,2DAA6B,CAAA;IAC7B,qDAAuB,CAAA;AACzB,CAAC,EAJW,0BAA0B,0CAA1B,0BAA0B,QAIrC;AAED,IAAY,kBAOX;AAPD,WAAY,kBAAkB;IAC5B,yCAAmB,CAAA;IACnB,yCAAmB,CAAA;IACnB,+CAAyB,CAAA;IACzB,mCAAa,CAAA;IACb,qCAAe,CAAA;IACf,2CAAqB,CAAA;AACvB,CAAC,EAPW,kBAAkB,kCAAlB,kBAAkB,QAO7B;AAED,IAAY,
|
|
1
|
+
{"version":3,"file":"oht.types.js","sourceRoot":"","sources":["../../types/oht.types.ts"],"names":[],"mappings":";;;AA0KA,IAAY,GAIX;AAJD,WAAY,GAAG;IACb,oBAAa,CAAA;IACb,wBAAiB,CAAA;IACjB,sBAAe,CAAA;AACjB,CAAC,EAJW,GAAG,mBAAH,GAAG,QAId;AAED,IAAY,0BAYX;AAZD,WAAY,0BAA0B;IACpC,mDAAqB,CAAA;IACrB,iDAAmB,CAAA;IACnB,uDAAyB,CAAA;IACzB,uDAAyB,CAAA;IACzB,qDAAuB,CAAA;IACvB,qDAAuB,CAAA;IACvB,6CAAe,CAAA;IACf,iDAAmB,CAAA;IACnB,mDAAqB,CAAA;IACrB,mDAAqB,CAAA;IACrB,2DAA6B,CAAA;AAC/B,CAAC,EAZW,0BAA0B,0CAA1B,0BAA0B,QAYrC;AAED,IAAY,kBAGX;AAHD,WAAY,kBAAkB;IAC5B,uDAAiC,CAAA;IACjC,6CAAuB,CAAA;AACzB,CAAC,EAHW,kBAAkB,kCAAlB,kBAAkB,QAG7B;AAED,IAAY,0BAIX;AAJD,WAAY,0BAA0B;IACpC,6CAAe,CAAA;IACf,2DAA6B,CAAA;IAC7B,qDAAuB,CAAA;AACzB,CAAC,EAJW,0BAA0B,0CAA1B,0BAA0B,QAIrC;AAED,IAAY,kBAOX;AAPD,WAAY,kBAAkB;IAC5B,yCAAmB,CAAA;IACnB,yCAAmB,CAAA;IACnB,+CAAyB,CAAA;IACzB,mCAAa,CAAA;IACb,qCAAe,CAAA;IACf,2CAAqB,CAAA;AACvB,CAAC,EAPW,kBAAkB,kCAAlB,kBAAkB,QAO7B;AAED,IAAY,YASX;AATD,WAAY,YAAY;IACtB,6CAA6B,CAAA;IAC7B,mDAAmC,CAAA;IACnC,yDAAyC,CAAA;IACzC,2DAA2C,CAAA;IAC3C,2DAA2C,CAAA;IAC3C,+DAA+C,CAAA;IAC/C,2DAA2C,CAAA;IAC3C,mDAAmC,CAAA;AACrC,CAAC,EATW,YAAY,4BAAZ,YAAY,QASvB;AA4CD,IAAY,YAIX;AAJD,WAAY,YAAY;IACtB,+BAAe,CAAA;IACf,iCAAiB,CAAA;IACjB,2BAAW,CAAA;AACb,CAAC,EAJW,YAAY,4BAAZ,YAAY,QAIvB;AAsCD,IAAY,kBAIX;AAJD,WAAY,kBAAkB;IAC5B,6CAAuB,CAAA;IACvB,2CAAqB,CAAA;IACrB,uDAAiC,CAAA;AACnC,CAAC,EAJW,kBAAkB,kCAAlB,kBAAkB,QAI7B;AAED,IAAY,sBAOX;AAPD,WAAY,sBAAsB;IAChC,+CAAqB,CAAA;IACrB,+CAAqB,CAAA;IACrB,4EAAkD,CAAA;IAClD,4EAAkD,CAAA;IAClD,4DAAkC,CAAA;IAClC,2CAAiB,CAAA;AACnB,CAAC,EAPW,sBAAsB,sCAAtB,sBAAsB,QAOjC;AAED,IAAY,WAGX;AAHD,WAAY,WAAW;IACrB,wBAAS,CAAA;IACT,sCAAuB,CAAA;AACzB,CAAC,EAHW,WAAW,2BAAX,WAAW,QAGtB;AAED,IAAY,kCAGX;AAHD,WAAY,kCAAkC;IAC5C,6DAAuB,CAAA;IACvB,iEAA2B,CAAA;AAC7B,CAAC,EAHW,kCAAkC,kDAAlC,kCAAkC,QAG7C;AAED,IAAY,gCAMX;AAND,WAAY,gCAAgC;IAC1C,2DAAuB,CAAA;IACvB,6EAAyC,CAAA;IACzC,+EAA2C,CAAA;IAC3C,2FAAuD,CAAA;IACvD,uFAAmD,CAAA;AACrD,CAAC,EANW,gCAAgC,gDAAhC,gCAAgC,QAM3C"}
|