@opengsd/gsd-core 1.3.0-rc.1 → 1.3.1

package/gsd-core/bin/lib/init.cjs

@@ -0,0 +1,1799 @@
+"use strict";
+/**
+ * Init — Compound init commands for workflow bootstrapping
+ *
+ * ADR-457 build-at-publish: the hand-written bin/lib/init.cjs collapsed to
+ * a TypeScript source of truth, compiled by tsc to a gitignored .cjs at the
+ * same require() path. Behaviour preserved byte-for-behaviour; only types are added.
+ */
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+const node_fs_1 = __importDefault(require("node:fs"));
+const node_path_1 = __importDefault(require("node:path"));
+const node_os_1 = __importDefault(require("node:os"));
+const shell_command_projection_cjs_1 = require("./shell-command-projection.cjs");
+// eslint-disable-next-line @typescript-eslint/no-require-imports -- core.cjs is an export= CommonJS module
+const core = require("./core.cjs");
+// eslint-disable-next-line @typescript-eslint/no-require-imports -- planning-workspace.cjs is an export= CommonJS module
+const planningWorkspace = require("./planning-workspace.cjs");
+const secrets_cjs_1 = require("./secrets.cjs");
+// eslint-disable-next-line @typescript-eslint/no-require-imports -- plan-scan.cjs is an export= CommonJS module
+const scanPhasePlans = require("./plan-scan.cjs");
+const state_document_cjs_1 = require("./state-document.cjs");
+const runtime_slash_cjs_1 = require("./runtime-slash.cjs");
+// eslint-disable-next-line @typescript-eslint/no-require-imports -- commands.cjs is an export= CommonJS module
+const commandsMod = require("./commands.cjs");
+const security_cjs_1 = require("./security.cjs");
+const runtime_homes_cjs_1 = require("./runtime-homes.cjs");
+// eslint-disable-next-line @typescript-eslint/no-require-imports -- frontmatter.cjs is an export= CommonJS module
+const frontmatterMod = require("./frontmatter.cjs");
+const { loadConfig, resolveModelInternal, findPhaseInternal, getRoadmapPhaseInternal, pathExistsInternal, gitWorktreeInfoInternal, generateSlugInternal, getMilestoneInfo, getMilestonePhaseFilter, stripShippedMilestones, extractCurrentMilestone, normalizePhaseName, toPosixPath, output, error, checkAgentsInstalled, phaseTokenMatches, } = core;
+const { planningPaths, planningDir, planningRoot, findContextMdIn, } = planningWorkspace;
+const { determinePhaseStatus } = commandsMod;
+const { extractFrontmatter } = frontmatterMod;
+// Unused but imported for structural parity
+void stripShippedMilestones;
+// Accept all bold/colon variants of the Requirements header (#2769)
+const REQUIREMENTS_HEADER_RE = /^\*\*Requirements:?\*\*[^\S\n]*:?[^\S\n]*([^\n]*)$/m;
+function listPhaseSummaryFiles(phaseDir) {
+    return scanPhasePlans(phaseDir)['summaryFiles'];
+}
+function listPhasePlanFiles(phaseDir) {
+    return scanPhasePlans(phaseDir)['planFiles'];
+}
+function getLatestCompletedMilestone(cwd) {
+    const milestonesPath = node_path_1.default.join(planningRoot(cwd), 'MILESTONES.md');
+    const content = (0, shell_command_projection_cjs_1.platformReadSync)(milestonesPath);
+    if (content === null)
+        return null;
+    const match = content.match(/^##\s+(v[\d.]+)\s+(.+?)\s+\(Shipped:/m);
+    if (!match)
+        return null;
+    return {
+        version: match[1],
+        name: match[2].trim(),
+    };
+}
+function withProjectRoot(cwd, result) {
+    result['project_root'] = cwd;
+    const activeRuntime = (0, runtime_slash_cjs_1.resolveRuntime)(cwd);
+    const agentStatus = checkAgentsInstalled(activeRuntime);
+    result['agents_installed'] = agentStatus.agents_installed;
+    result['missing_agents'] = agentStatus.missing_agents;
+    result['agents_dir'] = agentStatus.agents_dir;
+    result['agent_runtime'] = agentStatus.agent_runtime;
+    const config = loadConfig(cwd);
+    if (config.response_language) {
+        result['response_language'] = config.response_language;
+    }
+    if (config.project_code) {
+        result['project_code'] = config.project_code;
+    }
+    const projectMdPath = node_path_1.default.join(planningDir(cwd), 'PROJECT.md');
+    const content = (0, shell_command_projection_cjs_1.platformReadSync)(projectMdPath);
+    if (content) {
+        const h1Match = content.match(/^#\s+(.+)$/m);
+        if (h1Match) {
+            result['project_title'] = h1Match[1].trim();
+        }
+    }
+    return result;
+}
+function getInitGitState(cwd) {
+    const info = gitWorktreeInfoInternal(cwd);
+    const worktreeRoot = info['worktreeRoot'];
+    const normalizeForCompare = (p) => {
+        if (typeof p !== 'string' || p.length === 0)
+            return null;
+        let resolved;
+        try {
+            resolved = node_fs_1.default.realpathSync.native(p);
+        }
+        catch {
+            resolved = node_path_1.default.resolve(p);
+        }
+        resolved = node_path_1.default.resolve(resolved);
+        if (process.platform === 'win32') {
+            return resolved.replace(/\//g, '\\').toLowerCase();
+        }
+        return resolved;
+    };
+    let inNestedSubdir = false;
+    if (info['inside']) {
+        let resolvedByGitPrefix = false;
+        try {
+            const prefixResult = (0, shell_command_projection_cjs_1.execGit)(['rev-parse', '--show-prefix'], { cwd, timeout: 5000 });
+            if (prefixResult['exitCode'] === 0) {
+                const prefix = (typeof prefixResult['stdout'] === 'string' ? prefixResult['stdout'] : '').trim().replace(/\\/g, '/');
+                inNestedSubdir = prefix.length > 0 && prefix !== '.' && prefix !== './';
+                resolvedByGitPrefix = true;
+            }
+        }
+        catch {
+            /* intentionally empty */
+        }
+        if (!resolvedByGitPrefix) {
+            const rootNorm = normalizeForCompare(worktreeRoot);
+            const cwdNorm = normalizeForCompare(cwd);
+            if (rootNorm && cwdNorm) {
+                if (rootNorm === cwdNorm) {
+                    inNestedSubdir = false;
+                }
+                else {
+                    const rel = node_path_1.default.relative(rootNorm, cwdNorm);
+                    const relNorm = process.platform === 'win32' ? rel.replace(/\//g, '\\') : rel;
+                    inNestedSubdir =
+                        relNorm !== '' &&
+                            relNorm !== '.' &&
+                            !relNorm.startsWith('..') &&
+                            !node_path_1.default.isAbsolute(relNorm);
+                }
+            }
+            else {
+                inNestedSubdir = worktreeRoot !== null;
+            }
+        }
+    }
+    if (inNestedSubdir && typeof worktreeRoot === 'string') {
+        const toComparableRaw = (p) => p.replace(/\\/g, '/').replace(/\/+$/g, '').toLowerCase();
+        if (toComparableRaw(worktreeRoot) === toComparableRaw(String(cwd))) {
+            inNestedSubdir = false;
+        }
+    }
+    return {
+        has_git: info['inside'],
+        git_worktree_root: worktreeRoot,
+        in_nested_subdir: inNestedSubdir,
+    };
+}
+function cmdInitExecutePhase(cwd, phase, raw, options = {}) {
+    if (!phase) {
+        error('phase required for init execute-phase');
+    }
+    const config = loadConfig(cwd);
+    let phaseInfo = findPhaseInternal(cwd, phase);
+    const milestone = getMilestoneInfo(cwd);
+    const roadmapPhase = getRoadmapPhaseInternal(cwd, phase);
+    if (phaseInfo?.['archived'] && roadmapPhase?.['found']) {
+        phaseInfo = null;
+    }
+    if (!phaseInfo && roadmapPhase?.['found']) {
+        const phaseName = roadmapPhase['phase_name'];
+        phaseInfo = {
+            found: true,
+            directory: null,
+            phase_number: roadmapPhase['phase_number'],
+            phase_name: phaseName,
+            phase_slug: phaseName
+                ? phaseName.toLowerCase().replace(/[^a-z0-9]+/g, '-').replace(/^-+|-+$/g, '')
+                : null,
+            plans: [],
+            summaries: [],
+            incomplete_plans: [],
+            has_research: false,
+            has_context: false,
+            has_verification: false,
+            has_reviews: false,
+        };
+    }
+    const reqMatch = roadmapPhase?.['section']?.match(REQUIREMENTS_HEADER_RE);
+    const reqExtracted = reqMatch
+        ? reqMatch[1].replace(/[\[\]]/g, '').split(',').map((s) => s.trim()).filter(Boolean).join(', ')
+        : null;
+    const phase_req_ids = reqExtracted && reqExtracted !== 'TBD' ? reqExtracted : null;
+    const result = {
+        executor_model: resolveModelInternal(cwd, 'gsd-executor'),
+        verifier_model: resolveModelInternal(cwd, 'gsd-verifier'),
+        tdd_mode: options['tdd'] || config.tdd_mode || false,
+        commit_docs: config.commit_docs,
+        sub_repos: config.sub_repos,
+        parallelization: config.parallelization,
+        context_window: config.context_window,
+        branching_strategy: config.branching_strategy,
+        phase_branch_template: config.phase_branch_template,
+        milestone_branch_template: config.milestone_branch_template,
+        verifier_enabled: config.verifier,
+        phase_found: !!phaseInfo,
+        phase_dir: phaseInfo?.['directory'] || null,
+        phase_number: phaseInfo?.['phase_number'] || null,
+        phase_name: phaseInfo?.['phase_name'] || null,
+        phase_slug: phaseInfo?.['phase_slug'] || null,
+        phase_req_ids,
+        plans: phaseInfo?.['plans'] || [],
+        summaries: phaseInfo?.['summaries'] || [],
+        incomplete_plans: phaseInfo?.['incomplete_plans'] || [],
+        plan_count: phaseInfo?.['plans']?.length || 0,
+        incomplete_count: phaseInfo?.['incomplete_plans']?.length || 0,
+        branch_name: config.branching_strategy === 'phase' && phaseInfo
+            ? config.phase_branch_template
+                .replace('{project}', config.project_code || '')
+                .replace('{phase}', phaseInfo['phase_number'])
+                .replace('{slug}', phaseInfo['phase_slug'] || 'phase')
+            : config.branching_strategy === 'milestone'
+                ? config.milestone_branch_template
+                    .replace('{milestone}', milestone['version'])
+                    .replace('{slug}', generateSlugInternal(milestone['name']) || 'milestone')
+                : null,
+        milestone_version: milestone['version'],
+        milestone_name: milestone['name'],
+        milestone_slug: generateSlugInternal(milestone['name']),
+        state_exists: node_fs_1.default.existsSync(node_path_1.default.join(planningDir(cwd), 'STATE.md')),
+        roadmap_exists: node_fs_1.default.existsSync(node_path_1.default.join(planningDir(cwd), 'ROADMAP.md')),
+        config_exists: node_fs_1.default.existsSync(node_path_1.default.join(planningDir(cwd), 'config.json')),
+        state_path: toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningDir(cwd), 'STATE.md'))),
+        roadmap_path: toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningDir(cwd), 'ROADMAP.md'))),
+        config_path: toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningDir(cwd), 'config.json'))),
+    };
+    if (options['validate']) {
+        try {
+            const statePath = node_path_1.default.join(planningDir(cwd), 'STATE.md');
+            const stateContent = (0, shell_command_projection_cjs_1.platformReadSync)(statePath);
+            if (stateContent !== null) {
+                result['state_validation_ran'] = true;
+                const stateWarnings = [];
+                if (phaseInfo?.['directory'] && node_fs_1.default.existsSync(node_path_1.default.join(cwd, phaseInfo['directory']))) {
+                    const diskPlans = listPhasePlanFiles(node_path_1.default.join(cwd, phaseInfo['directory'])).length;
+                    const totalPlansRaw = (0, state_document_cjs_1.stateExtractField)(stateContent, 'Total Plans in Phase');
+                    const totalPlansInPhase = totalPlansRaw ? parseInt(totalPlansRaw, 10) : null;
+                    if (totalPlansInPhase !== null && diskPlans !== totalPlansInPhase) {
+                        stateWarnings.push(`Plan count mismatch: STATE.md says ${totalPlansInPhase}, disk has ${diskPlans}`);
+                    }
+                }
+                result['state_warnings'] = stateWarnings;
+            }
+        }
+        catch {
+            /* intentionally empty */
+        }
+    }
+    output(withProjectRoot(cwd, result), raw);
+}
+function cmdInitPlanPhase(cwd, phase, raw, options = {}) {
+    if (!phase) {
+        error('phase required for init plan-phase');
+    }
+    const config = loadConfig(cwd);
+    let phaseInfo = findPhaseInternal(cwd, phase);
+    const roadmapPhase = getRoadmapPhaseInternal(cwd, phase);
+    if (phaseInfo?.['archived'] && roadmapPhase?.['found']) {
+        phaseInfo = null;
+    }
+    if (!phaseInfo && roadmapPhase?.['found']) {
+        const phaseName = roadmapPhase['phase_name'];
+        phaseInfo = {
+            found: true,
+            directory: null,
+            phase_number: roadmapPhase['phase_number'],
+            phase_name: phaseName,
+            phase_slug: phaseName
+                ? phaseName.toLowerCase().replace(/[^a-z0-9]+/g, '-').replace(/^-+|-+$/g, '')
+                : null,
+            plans: [],
+            summaries: [],
+            incomplete_plans: [],
+            has_research: false,
+            has_context: false,
+            has_verification: false,
+            has_reviews: false,
+        };
+    }
+    const reqMatch = roadmapPhase?.['section']?.match(REQUIREMENTS_HEADER_RE);
+    const reqExtracted = reqMatch
+        ? reqMatch[1].replace(/[\[\]]/g, '').split(',').map((s) => s.trim()).filter(Boolean).join(', ')
+        : null;
+    const phase_req_ids = reqExtracted && reqExtracted !== 'TBD' ? reqExtracted : null;
+    const phaseDirPlan = phaseInfo?.['directory'] || null;
+    const phaseNumberPlan = phaseInfo?.['phase_number'] || null;
+    const phaseNamePlan = phaseInfo?.['phase_name'] || null;
+    const rawProjectCodePlan = config.project_code || '';
+    let expectedPhaseDirPlan = null;
+    if (!phaseDirPlan && phaseNumberPlan && phaseNamePlan) {
+        const paddedNum = normalizePhaseName(phaseNumberPlan);
+        const slug = (generateSlugInternal(phaseNamePlan) || '').substring(0, 60);
+        if (slug) {
+            const prefix = rawProjectCodePlan ? `${rawProjectCodePlan}-` : '';
+            const dirName = `${prefix}${paddedNum}-${slug}`;
+            expectedPhaseDirPlan = toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningPaths(cwd).phases, dirName)));
+        }
+    }
+    const result = {
+        researcher_model: resolveModelInternal(cwd, 'gsd-phase-researcher'),
+        planner_model: resolveModelInternal(cwd, 'gsd-planner'),
+        checker_model: resolveModelInternal(cwd, 'gsd-plan-checker'),
+        tdd_mode: options['tdd'] || config.tdd_mode || false,
+        research_enabled: config.research,
+        plan_checker_enabled: config.plan_checker,
+        nyquist_validation_enabled: config.nyquist_validation,
+        commit_docs: config.commit_docs,
+        text_mode: config.text_mode,
+        auto_advance: !!(config.auto_advance),
+        auto_chain_active: !!(config._auto_chain_active),
+        mode: config.mode || 'interactive',
+        phase_found: !!phaseInfo,
+        phase_dir: phaseDirPlan,
+        expected_phase_dir: expectedPhaseDirPlan,
+        phase_number: phaseNumberPlan,
+        phase_name: phaseNamePlan,
+        phase_slug: phaseInfo?.['phase_slug'] || null,
+        padded_phase: phaseNumberPlan ? normalizePhaseName(phaseNumberPlan) : null,
+        phase_req_ids,
+        phase_status: phaseDirPlan
+            ? determinePhaseStatus(phaseInfo?.['plans']?.length || 0, phaseInfo?.['summaries']?.length || 0, node_path_1.default.join(cwd, phaseDirPlan), 'Pending')
+            : 'Pending',
+        has_research: phaseInfo?.['has_research'] || false,
+        has_context: phaseInfo?.['has_context'] || false,
+        has_reviews: phaseInfo?.['has_reviews'] || false,
+        has_plans: (phaseInfo?.['plans']?.length || 0) > 0,
+        plan_count: phaseInfo?.['plans']?.length || 0,
+        planning_exists: node_fs_1.default.existsSync(planningDir(cwd)),
+        roadmap_exists: node_fs_1.default.existsSync(node_path_1.default.join(planningDir(cwd), 'ROADMAP.md')),
+        state_path: toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningDir(cwd), 'STATE.md'))),
+        roadmap_path: toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningDir(cwd), 'ROADMAP.md'))),
+        requirements_path: toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningDir(cwd), 'REQUIREMENTS.md'))),
+        patterns_path: null,
+    };
+    if (phaseInfo?.['directory']) {
+        const phaseDirFull = node_path_1.default.join(cwd, phaseInfo['directory']);
+        try {
+            const files = node_fs_1.default.readdirSync(phaseDirFull);
+            const contextFile = findContextMdIn(phaseDirFull);
+            if (contextFile) {
+                result['context_path'] = toPosixPath(node_path_1.default.join(phaseInfo['directory'], contextFile));
+            }
+            const researchFile = files.find((f) => f.endsWith('-RESEARCH.md') || f === 'RESEARCH.md');
+            if (researchFile) {
+                result['research_path'] = toPosixPath(node_path_1.default.join(phaseInfo['directory'], researchFile));
+            }
+            const verificationFile = files.find((f) => f.endsWith('-VERIFICATION.md') || f === 'VERIFICATION.md');
+            if (verificationFile) {
+                result['verification_path'] = toPosixPath(node_path_1.default.join(phaseInfo['directory'], verificationFile));
+            }
+            const uatFile = files.find((f) => f.endsWith('-UAT.md') || f === 'UAT.md');
+            if (uatFile) {
+                result['uat_path'] = toPosixPath(node_path_1.default.join(phaseInfo['directory'], uatFile));
+            }
+            const reviewsFile = files.find((f) => f.endsWith('-REVIEWS.md') || f === 'REVIEWS.md');
+            if (reviewsFile) {
+                result['reviews_path'] = toPosixPath(node_path_1.default.join(phaseInfo['directory'], reviewsFile));
+            }
+            const patternsFile = files.find((f) => f.endsWith('-PATTERNS.md') || f === 'PATTERNS.md');
+            if (patternsFile) {
+                result['patterns_path'] = toPosixPath(node_path_1.default.join(phaseInfo['directory'], patternsFile));
+            }
+        }
+        catch {
+            /* intentionally empty */
+        }
+    }
+    if (options['validate']) {
+        try {
+            const statePath = node_path_1.default.join(planningDir(cwd), 'STATE.md');
+            const stateContent = (0, shell_command_projection_cjs_1.platformReadSync)(statePath);
+            if (stateContent !== null) {
+                const stateWarnings = [];
+                result['state_validation_ran'] = true;
+                const totalPlansRaw = (0, state_document_cjs_1.stateExtractField)(stateContent, 'Total Plans in Phase');
+                const totalPlansInPhase = totalPlansRaw ? parseInt(totalPlansRaw, 10) : null;
+                if (totalPlansInPhase !== null &&
+                    phaseInfo &&
+                    totalPlansInPhase !==
+                        (phaseInfo['plans']?.length || 0)) {
+                    stateWarnings.push(`Plan count mismatch: STATE.md says ${totalPlansInPhase}, disk has ${phaseInfo['plans']?.length || 0}`);
+                }
+                result['state_warnings'] = stateWarnings;
+            }
+        }
+        catch {
+            /* intentionally empty */
+        }
+    }
+    output(withProjectRoot(cwd, result), raw);
+}
+function cmdInitNewProject(cwd, raw) {
+    const config = loadConfig(cwd);
+    const homedir = node_os_1.default.homedir();
+    const braveKeyFile = node_path_1.default.join(homedir, '.gsd', 'brave_api_key');
+    const hasBraveSearch = !!(process.env['BRAVE_API_KEY'] || node_fs_1.default.existsSync(braveKeyFile));
+    const firecrawlKeyFile = node_path_1.default.join(homedir, '.gsd', 'firecrawl_api_key');
+    const hasFirecrawl = !!(process.env['FIRECRAWL_API_KEY'] || node_fs_1.default.existsSync(firecrawlKeyFile));
+    const exaKeyFile = node_path_1.default.join(homedir, '.gsd', 'exa_api_key');
+    const hasExaSearch = !!(process.env['EXA_API_KEY'] || node_fs_1.default.existsSync(exaKeyFile));
+    let hasCode = false;
+    let hasPackageFile = false;
+    try {
+        const codeExtensions = new Set([
+            '.ts', '.js', '.py', '.go', '.rs', '.swift', '.java',
+            '.kt', '.kts',
+            '.c', '.cpp', '.h',
+            '.cs',
+            '.rb',
+            '.php',
+            '.dart',
+            '.m', '.mm',
+            '.scala',
+            '.groovy',
+            '.lua',
+            '.r', '.R',
+            '.zig',
+            '.ex', '.exs',
+            '.clj',
+        ]);
+        const skipDirs = new Set([
+            'node_modules', '.git', '.planning', '.claude', '.codex',
+            '__pycache__', 'target', 'dist', 'build',
+        ]);
+        function findCodeFiles(dir, depth) {
+            if (depth > 3)
+                return false;
+            let entries;
+            try {
+                entries = node_fs_1.default.readdirSync(dir, { withFileTypes: true });
+            }
+            catch {
+                return false;
+            }
+            for (const entry of entries) {
+                if (entry.isFile() && codeExtensions.has(node_path_1.default.extname(entry.name)))
+                    return true;
+                if (entry.isDirectory() && !skipDirs.has(entry.name)) {
+                    if (findCodeFiles(node_path_1.default.join(dir, entry.name), depth + 1))
+                        return true;
+                }
+            }
+            return false;
+        }
+        hasCode = findCodeFiles(cwd, 0);
+    }
+    catch {
+        /* intentionally empty — best-effort detection */
+    }
+    hasPackageFile =
+        pathExistsInternal(cwd, 'package.json') ||
+            pathExistsInternal(cwd, 'requirements.txt') ||
+            pathExistsInternal(cwd, 'Cargo.toml') ||
+            pathExistsInternal(cwd, 'go.mod') ||
+            pathExistsInternal(cwd, 'Package.swift') ||
+            pathExistsInternal(cwd, 'build.gradle') ||
+            pathExistsInternal(cwd, 'build.gradle.kts') ||
+            pathExistsInternal(cwd, 'pom.xml') ||
+            pathExistsInternal(cwd, 'Gemfile') ||
+            pathExistsInternal(cwd, 'composer.json') ||
+            pathExistsInternal(cwd, 'pubspec.yaml') ||
+            pathExistsInternal(cwd, 'CMakeLists.txt') ||
+            pathExistsInternal(cwd, 'Makefile') ||
+            pathExistsInternal(cwd, 'build.zig') ||
+            pathExistsInternal(cwd, 'mix.exs') ||
+            pathExistsInternal(cwd, 'project.clj');
+    const result = {
+        researcher_model: resolveModelInternal(cwd, 'gsd-project-researcher'),
+        synthesizer_model: resolveModelInternal(cwd, 'gsd-research-synthesizer'),
+        roadmapper_model: resolveModelInternal(cwd, 'gsd-roadmapper'),
+        commit_docs: config.commit_docs,
+        project_exists: pathExistsInternal(cwd, '.planning/PROJECT.md'),
+        has_codebase_map: pathExistsInternal(cwd, '.planning/codebase'),
+        planning_exists: pathExistsInternal(cwd, '.planning'),
+        has_existing_code: hasCode,
+        has_package_file: hasPackageFile,
+        is_brownfield: hasCode || hasPackageFile,
+        needs_codebase_map: (hasCode || hasPackageFile) && !pathExistsInternal(cwd, '.planning/codebase'),
+        ...getInitGitState(cwd),
+        brave_search_available: hasBraveSearch,
+        firecrawl_available: hasFirecrawl,
+        exa_search_available: hasExaSearch,
+        project_path: '.planning/PROJECT.md',
+    };
+    output(withProjectRoot(cwd, result), raw);
+}
+function cmdInitNewMilestone(cwd, raw) {
+    const config = loadConfig(cwd);
+    const milestone = getMilestoneInfo(cwd);
+    const latestCompleted = getLatestCompletedMilestone(cwd);
+    const phasesDir = node_path_1.default.join(planningDir(cwd), 'phases');
+    let phaseDirCount = 0;
+    try {
+        if (node_fs_1.default.existsSync(phasesDir)) {
+            const isDirInMilestone = getMilestonePhaseFilter(cwd);
+            phaseDirCount = node_fs_1.default
+                .readdirSync(phasesDir, { withFileTypes: true })
+                .filter((entry) => entry.isDirectory() && isDirInMilestone(entry.name))
+                .length;
+        }
+    }
+    catch {
+        /* intentionally empty */
+    }
+    const result = {
+        researcher_model: resolveModelInternal(cwd, 'gsd-project-researcher'),
+        synthesizer_model: resolveModelInternal(cwd, 'gsd-research-synthesizer'),
+        roadmapper_model: resolveModelInternal(cwd, 'gsd-roadmapper'),
+        commit_docs: config.commit_docs,
+        research_enabled: config.research,
+        current_milestone: milestone['version'],
+        current_milestone_name: milestone['name'],
+        latest_completed_milestone: latestCompleted?.version || null,
+        latest_completed_milestone_name: latestCompleted?.name || null,
+        phase_dir_count: phaseDirCount,
+        phase_archive_path: latestCompleted
+            ? toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningRoot(cwd), 'milestones', `${latestCompleted.version}-phases`)))
+            : null,
+        project_exists: pathExistsInternal(cwd, '.planning/PROJECT.md'),
+        roadmap_exists: node_fs_1.default.existsSync(node_path_1.default.join(planningDir(cwd), 'ROADMAP.md')),
+        state_exists: node_fs_1.default.existsSync(node_path_1.default.join(planningDir(cwd), 'STATE.md')),
+        project_path: '.planning/PROJECT.md',
+        roadmap_path: toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningDir(cwd), 'ROADMAP.md'))),
+        state_path: toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningDir(cwd), 'STATE.md'))),
+    };
+    output(withProjectRoot(cwd, result), raw);
+}
+function cmdInitQuick(cwd, description, raw) {
+    const config = loadConfig(cwd);
+    const now = new Date();
+    const slug = description ? generateSlugInternal(description)?.substring(0, 40) : null;
+    const yy = String(now.getFullYear()).slice(-2);
+    const mm = String(now.getMonth() + 1).padStart(2, '0');
+    const dd = String(now.getDate()).padStart(2, '0');
+    const dateStr = yy + mm + dd;
+    const secondsSinceMidnight = now.getHours() * 3600 + now.getMinutes() * 60 + now.getSeconds();
+    const timeBlocks = Math.floor(secondsSinceMidnight / 2);
+    const timeEncoded = timeBlocks.toString(36).padStart(3, '0');
+    const quickId = dateStr + '-' + timeEncoded;
+    const branchSlug = slug || 'quick';
+    const quickBranchName = config.quick_branch_template
+        ? config.quick_branch_template
+            .replace('{num}', quickId)
+            .replace('{quick}', quickId)
+            .replace('{slug}', branchSlug)
+        : null;
+    const result = {
+        planner_model: resolveModelInternal(cwd, 'gsd-planner'),
+        executor_model: resolveModelInternal(cwd, 'gsd-executor'),
+        checker_model: resolveModelInternal(cwd, 'gsd-plan-checker'),
+        verifier_model: resolveModelInternal(cwd, 'gsd-verifier'),
+        commit_docs: config.commit_docs,
+        branch_name: quickBranchName,
+        quick_id: quickId,
+        slug: slug,
+        description: description || null,
+        date: now.toISOString().split('T')[0],
+        timestamp: now.toISOString(),
+        quick_dir: '.planning/quick',
+        task_dir: slug ? `.planning/quick/${quickId}-${slug}` : null,
+        roadmap_exists: node_fs_1.default.existsSync(node_path_1.default.join(planningDir(cwd), 'ROADMAP.md')),
+        planning_exists: node_fs_1.default.existsSync(planningRoot(cwd)),
+    };
+    output(withProjectRoot(cwd, result), raw);
+}
+function cmdInitIngestDocs(cwd, raw) {
+    const config = loadConfig(cwd);
+    const result = {
+        project_exists: pathExistsInternal(cwd, '.planning/PROJECT.md'),
+        planning_exists: node_fs_1.default.existsSync(planningRoot(cwd)),
+        ...getInitGitState(cwd),
+        project_path: '.planning/PROJECT.md',
+        commit_docs: config.commit_docs,
+    };
+    output(withProjectRoot(cwd, result), raw);
+}
+function cmdInitResume(cwd, raw) {
+    const config = loadConfig(cwd);
+    let interruptedAgentId = null;
+    const agentIdRaw = (0, shell_command_projection_cjs_1.platformReadSync)(node_path_1.default.join(planningRoot(cwd), 'current-agent-id.txt'));
+    if (agentIdRaw !== null)
+        interruptedAgentId = agentIdRaw.trim();
+    const result = {
+        state_exists: node_fs_1.default.existsSync(node_path_1.default.join(planningDir(cwd), 'STATE.md')),
+        roadmap_exists: node_fs_1.default.existsSync(node_path_1.default.join(planningDir(cwd), 'ROADMAP.md')),
+        project_exists: pathExistsInternal(cwd, '.planning/PROJECT.md'),
+        planning_exists: node_fs_1.default.existsSync(planningRoot(cwd)),
+        state_path: toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningDir(cwd), 'STATE.md'))),
+        roadmap_path: toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningDir(cwd), 'ROADMAP.md'))),
+        project_path: '.planning/PROJECT.md',
+        has_interrupted_agent: !!interruptedAgentId,
+        interrupted_agent_id: interruptedAgentId,
+        commit_docs: config.commit_docs,
+    };
+    output(withProjectRoot(cwd, result), raw);
+}
+function cmdInitVerifyWork(cwd, phase, raw) {
+    if (!phase) {
+        error('phase required for init verify-work');
+    }
+    const config = loadConfig(cwd);
+    let phaseInfo = findPhaseInternal(cwd, phase);
+    if (phaseInfo?.['archived']) {
+        const roadmapPhase = getRoadmapPhaseInternal(cwd, phase);
+        if (roadmapPhase?.['found']) {
+            phaseInfo = null;
+        }
+    }
+    if (!phaseInfo) {
+        const roadmapPhase = getRoadmapPhaseInternal(cwd, phase);
+        if (roadmapPhase?.['found']) {
+            const phaseName = roadmapPhase['phase_name'];
+            phaseInfo = {
+                found: true,
+                directory: null,
+                phase_number: roadmapPhase['phase_number'],
+                phase_name: phaseName,
+                phase_slug: phaseName
+                    ? phaseName.toLowerCase().replace(/[^a-z0-9]+/g, '-').replace(/^-+|-+$/g, '')
+                    : null,
+                plans: [],
+                summaries: [],
+                incomplete_plans: [],
+                has_research: false,
+                has_context: false,
+                has_verification: false,
+            };
+        }
+    }
+    const result = {
+        planner_model: resolveModelInternal(cwd, 'gsd-planner'),
+        checker_model: resolveModelInternal(cwd, 'gsd-plan-checker'),
+        commit_docs: config.commit_docs,
+        phase_found: !!phaseInfo,
+        phase_dir: phaseInfo?.['directory'] || null,
+        phase_number: phaseInfo?.['phase_number'] || null,
+        phase_name: phaseInfo?.['phase_name'] || null,
+        has_verification: phaseInfo?.['has_verification'] || false,
+    };
+    output(withProjectRoot(cwd, result), raw);
+}
+function cmdInitPhaseOp(cwd, phase, raw) {
+    const config = loadConfig(cwd);
+    let phaseInfo = findPhaseInternal(cwd, phase);
+    if (phaseInfo?.['archived']) {
+        const roadmapPhase = getRoadmapPhaseInternal(cwd, phase);
+        if (roadmapPhase?.['found']) {
+            const phaseName = roadmapPhase['phase_name'];
+            phaseInfo = {
+                found: true,
+                directory: null,
+                phase_number: roadmapPhase['phase_number'],
+                phase_name: phaseName,
+                phase_slug: phaseName
+                    ? phaseName.toLowerCase().replace(/[^a-z0-9]+/g, '-').replace(/^-+|-+$/g, '')
+                    : null,
+                plans: [],
+                summaries: [],
+                incomplete_plans: [],
+                has_research: false,
+                has_context: false,
+                has_verification: false,
+            };
+        }
+    }
+    if (!phaseInfo) {
+        const roadmapPhase = getRoadmapPhaseInternal(cwd, phase);
+        if (roadmapPhase?.['found']) {
+            const phaseName = roadmapPhase['phase_name'];
+            phaseInfo = {
+                found: true,
+                directory: null,
+                phase_number: roadmapPhase['phase_number'],
+                phase_name: phaseName,
+                phase_slug: phaseName
+                    ? phaseName.toLowerCase().replace(/[^a-z0-9]+/g, '-').replace(/^-+|-+$/g, '')
+                    : null,
+                plans: [],
+                summaries: [],
+                incomplete_plans: [],
+                has_research: false,
+                has_context: false,
+                has_verification: false,
+            };
+        }
+    }
+    const phaseDir = phaseInfo?.['directory'] || null;
+    const phaseNumber = phaseInfo?.['phase_number'] || null;
+    const phaseName = phaseInfo?.['phase_name'] || null;
+    const rawProjectCode = config.project_code || '';
+    let expectedPhaseDir = null;
+    if (!phaseDir && phaseNumber && phaseName) {
+        const paddedNum = normalizePhaseName(phaseNumber);
+        const slug = (generateSlugInternal(phaseName) || '').substring(0, 60);
+        if (slug) {
+            const prefix = rawProjectCode ? `${rawProjectCode}-` : '';
+            const dirName = `${prefix}${paddedNum}-${slug}`;
+            expectedPhaseDir = toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningPaths(cwd).phases, dirName)));
+        }
+    }
+    const result = {
+        commit_docs: config.commit_docs,
+        brave_search: typeof config.brave_search === 'string'
+            ? (0, secrets_cjs_1.maskIfSecret)('brave_search', config.brave_search)
+            : config.brave_search,
+        firecrawl: typeof config.firecrawl === 'string'
+            ? (0, secrets_cjs_1.maskIfSecret)('firecrawl', config.firecrawl)
+            : config.firecrawl,
+        exa_search: typeof config.exa_search === 'string'
+            ? (0, secrets_cjs_1.maskIfSecret)('exa_search', config.exa_search)
+            : config.exa_search,
+        phase_found: !!phaseInfo,
+        phase_dir: phaseDir,
+        expected_phase_dir: expectedPhaseDir,
+        phase_number: phaseNumber,
+        phase_name: phaseName,
+        phase_slug: phaseInfo?.['phase_slug'] || null,
+        padded_phase: phaseNumber ? normalizePhaseName(phaseNumber) : null,
+        has_research: phaseInfo?.['has_research'] || false,
+        has_context: phaseInfo?.['has_context'] || false,
+        has_plans: (phaseInfo?.['plans']?.length || 0) > 0,
+        has_verification: phaseInfo?.['has_verification'] || false,
+        has_reviews: phaseInfo?.['has_reviews'] || false,
+        plan_count: phaseInfo?.['plans']?.length || 0,
+        roadmap_exists: node_fs_1.default.existsSync(node_path_1.default.join(planningDir(cwd), 'ROADMAP.md')),
+        planning_exists: node_fs_1.default.existsSync(planningDir(cwd)),
+        state_path: toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningDir(cwd), 'STATE.md'))),
+        roadmap_path: toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningDir(cwd), 'ROADMAP.md'))),
+        requirements_path: toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningDir(cwd), 'REQUIREMENTS.md'))),
+    };
+    if (phaseInfo?.['directory']) {
+        const phaseDirFull = node_path_1.default.join(cwd, phaseInfo['directory']);
+        try {
+            const files = node_fs_1.default.readdirSync(phaseDirFull);
+            const contextFile = findContextMdIn(phaseDirFull);
+            if (contextFile) {
+                result['context_path'] = toPosixPath(node_path_1.default.join(phaseInfo['directory'], contextFile));
+            }
+            const researchFile = files.find((f) => f.endsWith('-RESEARCH.md') || f === 'RESEARCH.md');
+            if (researchFile) {
+                result['research_path'] = toPosixPath(node_path_1.default.join(phaseInfo['directory'], researchFile));
+            }
+            const verificationFile = files.find((f) => f.endsWith('-VERIFICATION.md') || f === 'VERIFICATION.md');
+            if (verificationFile) {
+                result['verification_path'] = toPosixPath(node_path_1.default.join(phaseInfo['directory'], verificationFile));
+            }
+            const uatFile = files.find((f) => f.endsWith('-UAT.md') || f === 'UAT.md');
+            if (uatFile) {
+                result['uat_path'] = toPosixPath(node_path_1.default.join(phaseInfo['directory'], uatFile));
+            }
+            const reviewsFile = files.find((f) => f.endsWith('-REVIEWS.md') || f === 'REVIEWS.md');
+            if (reviewsFile) {
+                result['reviews_path'] = toPosixPath(node_path_1.default.join(phaseInfo['directory'], reviewsFile));
+            }
+        }
+        catch {
+            /* intentionally empty */
+        }
+    }
+    output(withProjectRoot(cwd, result), raw);
+}
+function cmdInitTodos(cwd, area, raw) {
+    const config = loadConfig(cwd);
+    const now = new Date();
+    const pendingDir = node_path_1.default.join(planningDir(cwd), 'todos', 'pending');
+    let count = 0;
+    const todos = [];
+    try {
+        const files = node_fs_1.default.readdirSync(pendingDir).filter((f) => f.endsWith('.md'));
+        for (const file of files) {
+            const content = (0, shell_command_projection_cjs_1.platformReadSync)(node_path_1.default.join(pendingDir, file));
+            if (content === null)
+                continue;
+            try {
+                const createdMatch = content.match(/^created:\s*(.+)$/m);
+                const titleMatch = content.match(/^title:\s*(.+)$/m);
+                const areaMatch = content.match(/^area:\s*(.+)$/m);
+                const todoArea = areaMatch ? areaMatch[1].trim() : 'general';
+                if (area && todoArea !== area)
+                    continue;
+                count++;
+                todos.push({
+                    file,
+                    created: createdMatch ? createdMatch[1].trim() : 'unknown',
+                    title: titleMatch ? titleMatch[1].trim() : 'Untitled',
+                    area: todoArea,
+                    path: toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningDir(cwd), 'todos', 'pending', file))),
+                });
+            }
+            catch {
+                /* intentionally empty */
+            }
+        }
+    }
+    catch {
+        /* intentionally empty */
+    }
+    const result = {
+        commit_docs: config.commit_docs,
+        date: now.toISOString().split('T')[0],
+        timestamp: now.toISOString(),
+        todo_count: count,
+        todos,
+        area_filter: area || null,
+        pending_dir: toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningDir(cwd), 'todos', 'pending'))),
+        completed_dir: toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningDir(cwd), 'todos', 'completed'))),
+        planning_exists: node_fs_1.default.existsSync(planningDir(cwd)),
+        todos_dir_exists: node_fs_1.default.existsSync(node_path_1.default.join(planningDir(cwd), 'todos')),
+        pending_dir_exists: node_fs_1.default.existsSync(node_path_1.default.join(planningDir(cwd), 'todos', 'pending')),
+    };
+    output(withProjectRoot(cwd, result), raw);
+}
+function cmdInitMilestoneOp(cwd, raw) {
+    const config = loadConfig(cwd);
+    const milestone = getMilestoneInfo(cwd);
+    let phaseCount = 0;
+    let completedPhases = 0;
+    const phasesDir = node_path_1.default.join(planningDir(cwd), 'phases');
+    const roadmapPhaseNumbers = [];
+    try {
+        const roadmapPath = node_path_1.default.join(planningDir(cwd), 'ROADMAP.md');
+        const roadmapRaw = node_fs_1.default.readFileSync(roadmapPath, 'utf-8');
+        const currentSection = extractCurrentMilestone(roadmapRaw, cwd);
+        const phasePattern = /#{2,4}\s*Phase\s+(\d+[A-Z]?(?:\.\d+)*)\s*:/gi;
+        let m;
+        while ((m = phasePattern.exec(currentSection)) !== null) {
+            roadmapPhaseNumbers.push(m[1]);
+        }
+    }
+    catch {
+        /* intentionally empty */
+    }
+    const canonicalizePhase = (tok) => {
+        const m = tok.match(/^(\d+)([A-Z]?(?:\.\d+)*)$/);
+        return m ? String(parseInt(m[1], 10)) + m[2] : tok;
+    };
+    const diskPhaseDirs = new Map();
+    try {
+        const entries = node_fs_1.default.readdirSync(phasesDir, { withFileTypes: true });
+        for (const e of entries) {
+            if (!e.isDirectory())
+                continue;
+            const m = e.name.match(/^(\d+[A-Z]?(?:\.\d+)*)/);
+            if (!m)
+                continue;
+            diskPhaseDirs.set(canonicalizePhase(m[1]), e.name);
+        }
+    }
+    catch {
+        /* intentionally empty */
+    }
+    if (roadmapPhaseNumbers.length > 0) {
+        phaseCount = roadmapPhaseNumbers.length;
+        for (const num of roadmapPhaseNumbers) {
+            const dirName = diskPhaseDirs.get(canonicalizePhase(num));
+            if (!dirName)
+                continue;
+            try {
+                const hasSummary = listPhaseSummaryFiles(node_path_1.default.join(phasesDir, dirName)).length > 0;
+                if (hasSummary)
+                    completedPhases++;
+            }
+            catch {
+                /* intentionally empty */
+            }
+        }
+    }
+    else {
+        try {
+            const entries = node_fs_1.default.readdirSync(phasesDir, { withFileTypes: true });
+            const dirs = entries.filter((e) => e.isDirectory()).map((e) => e.name);
+            phaseCount = dirs.length;
+            for (const dir of dirs) {
+                try {
+                    const hasSummary = listPhaseSummaryFiles(node_path_1.default.join(phasesDir, dir)).length > 0;
+                    if (hasSummary)
+                        completedPhases++;
+                }
+                catch {
+                    /* intentionally empty */
+                }
+            }
+        }
+        catch {
+            /* intentionally empty */
+        }
+    }
+    const archiveDir = node_path_1.default.join(planningRoot(cwd), 'archive');
+    let archivedMilestones = [];
+    try {
+        archivedMilestones = node_fs_1.default
+            .readdirSync(archiveDir, { withFileTypes: true })
+            .filter((e) => e.isDirectory())
+            .map((e) => e.name);
+    }
+    catch {
+        /* intentionally empty */
+    }
+    const result = {
+        commit_docs: config.commit_docs,
+        milestone_version: milestone['version'],
+        milestone_name: milestone['name'],
+        milestone_slug: generateSlugInternal(milestone['name']),
+        phase_count: phaseCount,
+        completed_phases: completedPhases,
+        all_phases_complete: phaseCount > 0 && phaseCount === completedPhases,
+        archived_milestones: archivedMilestones,
+        archive_count: archivedMilestones.length,
+        project_exists: pathExistsInternal(cwd, '.planning/PROJECT.md'),
+        roadmap_exists: node_fs_1.default.existsSync(node_path_1.default.join(planningDir(cwd), 'ROADMAP.md')),
+        state_exists: node_fs_1.default.existsSync(node_path_1.default.join(planningDir(cwd), 'STATE.md')),
+        archive_exists: node_fs_1.default.existsSync(node_path_1.default.join(planningRoot(cwd), 'archive')),
+        phases_dir_exists: node_fs_1.default.existsSync(node_path_1.default.join(planningDir(cwd), 'phases')),
+    };
+    output(withProjectRoot(cwd, result), raw);
+}
+function cmdInitMapCodebase(cwd, raw) {
+    const config = loadConfig(cwd);
+    const now = new Date();
+    const codebaseDir = node_path_1.default.join(planningRoot(cwd), 'codebase');
+    let existingMaps = [];
+    try {
+        existingMaps = node_fs_1.default.readdirSync(codebaseDir).filter((f) => f.endsWith('.md'));
+    }
+    catch {
+        /* intentionally empty */
+    }
+    const result = {
+        mapper_model: resolveModelInternal(cwd, 'gsd-codebase-mapper'),
+        commit_docs: config.commit_docs,
+        search_gitignored: config.search_gitignored,
+        parallelization: config.parallelization,
+        subagent_timeout: config.subagent_timeout,
+        date: now.toISOString().split('T')[0],
+        timestamp: now.toISOString(),
+        codebase_dir: '.planning/codebase',
+        existing_maps: existingMaps,
+        has_maps: existingMaps.length > 0,
+        planning_exists: pathExistsInternal(cwd, '.planning'),
+        codebase_dir_exists: pathExistsInternal(cwd, '.planning/codebase'),
+    };
+    output(withProjectRoot(cwd, result), raw);
+}
+function cmdInitManager(cwd, raw) {
+    const config = loadConfig(cwd);
+    const milestone = getMilestoneInfo(cwd);
+    const _slashRuntime = (0, runtime_slash_cjs_1.resolveRuntime)(cwd);
+    const paths = planningPaths(cwd);
+    if (!node_fs_1.default.existsSync(paths.roadmap)) {
+        error(`No ROADMAP.md found. Run ${(0, runtime_slash_cjs_1.formatGsdSlash)('new-milestone', _slashRuntime)} first.`);
+    }
+    if (!node_fs_1.default.existsSync(paths.state)) {
+        error(`No STATE.md found. Run ${(0, runtime_slash_cjs_1.formatGsdSlash)('new-milestone', _slashRuntime)} first.`);
+    }
+    const rawContent = node_fs_1.default.readFileSync(paths.roadmap, 'utf-8');
+    const content = extractCurrentMilestone(rawContent, cwd);
+    const phasesDir = paths.phases;
+    const isDirInMilestone = getMilestonePhaseFilter(cwd);
+    const _phaseDirEntries = (() => {
+        try {
+            return node_fs_1.default
+                .readdirSync(phasesDir, { withFileTypes: true })
+                .filter((e) => e.isDirectory())
+                .map((e) => e.name);
+        }
+        catch {
+            return [];
+        }
+    })();
+    const _checkboxStates = new Map();
+    const _cbPattern = /-\s*\[(x| )\]\s*.*Phase\s+(\d+[A-Z]?(?:\.\d+)*)[:\s]/gi;
+    let _cbMatch;
+    while ((_cbMatch = _cbPattern.exec(content)) !== null) {
+        _checkboxStates.set(_cbMatch[2], _cbMatch[1].toLowerCase() === 'x');
+    }
+    const phasePattern = /#{2,4}\s*Phase\s+(\d+[A-Z]?(?:\.\d+)*)\s*:\s*([^\n]+)/gi;
+    const phases = [];
+    let match;
+    while ((match = phasePattern.exec(content)) !== null) {
+        const phaseNum = match[1];
+        const phaseName = match[2].replace(/\(INSERTED\)/i, '').trim();
+        const sectionStart = match.index;
+        const restOfContent = content.slice(sectionStart);
+        const nextHeader = restOfContent.match(/\n#{2,4}\s+Phase\s+\d[\d.]*/i);
+        const sectionEnd = nextHeader
+            ? sectionStart + nextHeader.index
+            : content.length;
+        const section = content.slice(sectionStart, sectionEnd);
+        const goalMatch = section.match(/\*\*Goal(?::\*\*|\*\*:)\s*([^\n]+)/i);
+        const goal = goalMatch ? goalMatch[1].trim() : null;
+        const dependsMatch = section.match(/\*\*Depends on(?::\*\*|\*\*:)\s*([^\n]+)/i);
+        const depends_on = dependsMatch ? dependsMatch[1].trim() : null;
+        const normalized = normalizePhaseName(phaseNum);
+        let diskStatus = 'no_directory';
+        let planCount = 0;
+        let summaryCount = 0;
+        let hasContext = false;
+        let hasResearch = false;
+        let lastActivity = null;
+        let isActive = false;
+        try {
+            const dirs = _phaseDirEntries.filter(isDirInMilestone);
+            const dirMatch = dirs.find((d) => phaseTokenMatches(d, normalized));
+            if (dirMatch) {
+                const fullDir = node_path_1.default.join(phasesDir, dirMatch);
+                const phaseFiles = node_fs_1.default.readdirSync(fullDir);
+                planCount = listPhasePlanFiles(fullDir).length;
+                summaryCount = listPhaseSummaryFiles(fullDir).length;
+                hasContext = findContextMdIn(fullDir) !== null;
+                hasResearch = phaseFiles.some((f) => f.endsWith('-RESEARCH.md') || f === 'RESEARCH.md');
+                if (summaryCount >= planCount && planCount > 0)
+                    diskStatus = 'complete';
+                else if (summaryCount > 0)
+                    diskStatus = 'partial';
+                else if (planCount > 0)
+                    diskStatus = 'planned';
+                else if (hasResearch)
+                    diskStatus = 'researched';
+                else if (hasContext)
+                    diskStatus = 'discussed';
+                else
+                    diskStatus = 'empty';
+                const nowMs = Date.now();
+                let newestMtime = 0;
+                for (const f of phaseFiles) {
+                    try {
+                        const stat = node_fs_1.default.statSync(node_path_1.default.join(fullDir, f));
+                        if (stat.mtimeMs > newestMtime)
+                            newestMtime = stat.mtimeMs;
+                    }
+                    catch {
+                        /* intentionally empty */
+                    }
+                }
+                if (newestMtime > 0) {
+                    lastActivity = new Date(newestMtime).toISOString();
+                    isActive = nowMs - newestMtime < 300000;
+                }
+            }
+        }
+        catch {
+            /* intentionally empty */
+        }
+        const roadmapComplete = _checkboxStates.get(phaseNum) || false;
+        if (roadmapComplete && diskStatus !== 'complete') {
+            diskStatus = 'complete';
+        }
+        phases.push({
+            number: phaseNum,
+            name: phaseName,
+            goal,
+            depends_on,
+            disk_status: diskStatus,
+            has_context: hasContext,
+            has_research: hasResearch,
+            plan_count: planCount,
+            summary_count: summaryCount,
+            roadmap_complete: roadmapComplete,
+            last_activity: lastActivity,
+            is_active: isActive,
+        });
+    }
+    const MAX_NAME_WIDTH = 20;
+    for (const phase of phases) {
+        const name = phase['name'];
+        if (name.length > MAX_NAME_WIDTH) {
+            phase['display_name'] = name.slice(0, MAX_NAME_WIDTH - 1) + '…';
+        }
+        else {
+            phase['display_name'] = name;
+        }
+    }
+    const completedNums = new Set(phases.filter((p) => p['disk_status'] === 'complete').map((p) => p['number']));
+    const _allCompletedPattern = /-\s*\[x\]\s*.*Phase\s+(\d+[A-Z]?(?:\.\d+)*)[:\s]/gi;
+    let _allMatch;
+    while ((_allMatch = _allCompletedPattern.exec(rawContent)) !== null) {
+        completedNums.add(_allMatch[1]);
+    }
+    const phaseMap = new Map(phases.map((p) => [p['number'], p]));
+    function reaches(from, to, visited = new Set()) {
+        if (visited.has(from))
+            return false;
+        visited.add(from);
+        const p = phaseMap.get(from);
+        if (!p || !p['dep_phases'] || p['dep_phases'].length === 0)
+            return false;
+        if (p['dep_phases'].includes(to))
+            return true;
+        return p['dep_phases'].some((dep) => reaches(dep, to, visited));
+    }
+    function hasDepRelationship(numA, numB) {
+        return reaches(numA, numB) || reaches(numB, numA);
+    }
+    for (const phase of phases) {
+        if (!phase['depends_on'] ||
+            /^none$/i.test(phase['depends_on'].trim())) {
+            phase['deps_satisfied'] = true;
+        }
+        else {
+            const depNums = phase['depends_on'].match(/\d+(?:\.\d+)*/g) || [];
+            phase['deps_satisfied'] = depNums.every((n) => completedNums.has(n));
+            phase['dep_phases'] = depNums;
+        }
+    }
+    for (const phase of phases) {
+        phase['deps_display'] =
+            phase['dep_phases'] && phase['dep_phases'].length > 0
+                ? phase['dep_phases'].join(',')
+                : '—';
+    }
+    for (const phase of phases) {
+        phase['is_next_to_discuss'] =
+            (phase['disk_status'] === 'empty' || phase['disk_status'] === 'no_directory') &&
+                phase['deps_satisfied'];
+    }
+    let waitingSignal = null;
+    try {
+        const waitingPath = node_path_1.default.join(cwd, '.planning', 'WAITING.json');
+        const waitingRaw = (0, shell_command_projection_cjs_1.platformReadSync)(waitingPath);
+        if (waitingRaw !== null) {
+            waitingSignal = JSON.parse(waitingRaw);
+        }
+    }
+    catch {
+        /* intentionally empty */
+    }
+    const recommendedActions = [];
+    for (const phase of phases) {
+        if (phase['disk_status'] === 'complete')
+            continue;
+        if (/^999(?:\.|$)/.test(phase['number']))
+            continue;
+        if (phase['disk_status'] === 'planned' && phase['deps_satisfied']) {
+            recommendedActions.push({
+                phase: phase['number'],
+                phase_name: phase['name'],
+                action: 'execute',
+                reason: `${phase['plan_count']} plans ready, dependencies met`,
+                command: `${(0, runtime_slash_cjs_1.formatGsdSlash)('execute-phase', _slashRuntime)} ${phase['number']}`,
+            });
+        }
+        else if (phase['disk_status'] === 'discussed' ||
+            phase['disk_status'] === 'researched') {
+            recommendedActions.push({
+                phase: phase['number'],
+                phase_name: phase['name'],
+                action: 'plan',
+                reason: 'Context gathered, ready for planning',
+                command: `${(0, runtime_slash_cjs_1.formatGsdSlash)('plan-phase', _slashRuntime)} ${phase['number']}`,
+            });
+        }
+        else if ((phase['disk_status'] === 'empty' || phase['disk_status'] === 'no_directory') &&
+            phase['is_next_to_discuss']) {
+            recommendedActions.push({
+                phase: phase['number'],
+                phase_name: phase['name'],
+                action: 'discuss',
+                reason: 'Unblocked, ready to gather context',
+                command: `${(0, runtime_slash_cjs_1.formatGsdSlash)('discuss-phase', _slashRuntime)} ${phase['number']}`,
+            });
+        }
+    }
+    const activeExecuting = phases.filter((p) => p['disk_status'] === 'partial' ||
+        (p['disk_status'] === 'planned' && p['is_active']));
+    const activePlanning = phases.filter((p) => p['is_active'] &&
+        (p['disk_status'] === 'discussed' || p['disk_status'] === 'researched'));
+    const filteredActions = recommendedActions.filter((action) => {
+        if (action['action'] === 'execute' && activeExecuting.length > 0) {
+            return activeExecuting.every((active) => !hasDepRelationship(action['phase'], active['number']));
+        }
+        if (action['action'] === 'plan' && activePlanning.length > 0) {
+            return activePlanning.every((active) => !hasDepRelationship(action['phase'], active['number']));
+        }
+        return true;
+    });
+    const nonBacklogPhases = phases.filter((p) => !/^999(?:\.|$)/.test(p['number']));
+    const completedCount = nonBacklogPhases.filter((p) => p['disk_status'] === 'complete').length;
+    const sanitizeFlags = (rawVal) => {
+        const val = typeof rawVal === 'string' ? rawVal : '';
+        if (!val)
+            return '';
+        const tokens = val.split(/\s+/).filter(Boolean);
+        const safe = tokens.every((t) => /^--[a-zA-Z0-9][-a-zA-Z0-9]*$/.test(t) ||
+            /^[a-zA-Z0-9][-a-zA-Z0-9_.]*$/.test(t));
+        if (!safe) {
+            process.stderr.write(`gsd-tools: warning: manager.flags contains invalid tokens, ignoring: ${val}\n`);
+            return '';
+        }
+        return val;
+    };
+    const mgr = config.manager;
+    const mgrFlags = mgr?.['flags'];
+    const managerFlags = {
+        discuss: sanitizeFlags(mgrFlags?.['discuss']),
+        plan: sanitizeFlags(mgrFlags?.['plan']),
+        execute: sanitizeFlags(mgrFlags?.['execute']),
+    };
+    const result = {
+        milestone_version: milestone['version'],
+        milestone_name: milestone['name'],
+        phases,
+        phase_count: phases.length,
+        completed_count: completedCount,
+        in_progress_count: phases.filter((p) => ['partial', 'planned', 'discussed', 'researched'].includes(p['disk_status'])).length,
+        recommended_actions: filteredActions,
+        waiting_signal: waitingSignal,
+        all_complete: completedCount === nonBacklogPhases.length && nonBacklogPhases.length > 0,
+        project_exists: pathExistsInternal(cwd, '.planning/PROJECT.md'),
+        roadmap_exists: true,
+        state_exists: true,
+        manager_flags: managerFlags,
+    };
+    output(withProjectRoot(cwd, result), raw);
+}
+function cmdInitProgress(cwd, raw) {
+    try {
+        const { pruneOrphanedWorktrees } = core;
+        pruneOrphanedWorktrees(cwd);
+    }
+    catch {
+        /* intentionally empty */
+    }
+    const config = loadConfig(cwd);
+    const milestone = getMilestoneInfo(cwd);
+    const phasesDir = node_path_1.default.join(planningDir(cwd), 'phases');
+    const phases = [];
+    let currentPhase = null;
+    let nextPhase = null;
+    const roadmapPhaseNums = new Set();
+    const roadmapPhaseNames = new Map();
+    const roadmapCheckboxStates = new Map();
+    try {
+        const roadmapContent = extractCurrentMilestone(node_fs_1.default.readFileSync(node_path_1.default.join(planningDir(cwd), 'ROADMAP.md'), 'utf-8'), cwd);
+        const headingPattern = /#{2,4}\s*Phase\s+(\d+[A-Z]?(?:\.\d+)*)\s*:\s*([^\n]+)/gi;
+        let hm;
+        while ((hm = headingPattern.exec(roadmapContent)) !== null) {
+            roadmapPhaseNums.add(hm[1]);
+            roadmapPhaseNames.set(hm[1], hm[2].replace(/\(INSERTED\)/i, '').trim());
+        }
+        const cbPattern = /-\s*\[(x| )\]\s*.*Phase\s+(\d+[A-Z]?(?:\.\d+)*)[:\s]/gi;
+        let cbm;
+        while ((cbm = cbPattern.exec(roadmapContent)) !== null) {
+            roadmapCheckboxStates.set(cbm[2], cbm[1].toLowerCase() === 'x');
+        }
+    }
+    catch {
+        /* intentionally empty */
+    }
+    const isDirInMilestone = getMilestonePhaseFilter(cwd);
+    const seenPhaseNums = new Set();
+    try {
+        const entries = node_fs_1.default.readdirSync(phasesDir, { withFileTypes: true });
+        const dirs = entries
+            .filter((e) => e.isDirectory())
+            .map((e) => e.name)
+            .filter(isDirInMilestone)
+            .sort((a, b) => {
+            const pa = a.match(/^(\d+[A-Z]?(?:\.\d+)*)/i);
+            const pb = b.match(/^(\d+[A-Z]?(?:\.\d+)*)/i);
+            if (!pa || !pb)
+                return a.localeCompare(b);
+            return parseInt(pa[1], 10) - parseInt(pb[1], 10);
+        });
+        for (const dir of dirs) {
+            const dirMatch = dir.match(/^(\d+[A-Z]?(?:\.\d+)*)-?(.*)/i);
+            const phaseNumber = dirMatch ? dirMatch[1] : dir;
+            const phaseName = dirMatch && dirMatch[2] ? dirMatch[2] : null;
+            seenPhaseNums.add(phaseNumber.replace(/^0+/, '') || '0');
+            const phasePath = node_path_1.default.join(phasesDir, dir);
+            const phaseFiles = node_fs_1.default.readdirSync(phasePath);
+            const plans = listPhasePlanFiles(phasePath);
+            const summaries = listPhaseSummaryFiles(phasePath);
+            const hasResearch = phaseFiles.some((f) => f.endsWith('-RESEARCH.md') || f === 'RESEARCH.md');
+            const status = summaries.length >= plans.length && plans.length > 0
+                ? 'complete'
+                : plans.length > 0
+                    ? 'in_progress'
+                    : hasResearch
+                        ? 'researched'
+                        : 'pending';
+            const phaseInfo = {
+                number: phaseNumber,
+                name: phaseName,
+                directory: toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningDir(cwd), 'phases', dir))),
+                status,
+                plan_count: plans.length,
+                summary_count: summaries.length,
+                has_research: hasResearch,
+            };
+            phases.push(phaseInfo);
+            if (!currentPhase && (status === 'in_progress' || status === 'researched')) {
+                currentPhase = phaseInfo;
+            }
+            if (!nextPhase && status === 'pending') {
+                nextPhase = phaseInfo;
+            }
+        }
+    }
+    catch {
+        /* intentionally empty */
+    }
+    for (const [num, name] of roadmapPhaseNames) {
+        const stripped = num.replace(/^0+/, '') || '0';
+        if (!seenPhaseNums.has(stripped)) {
+            const checkboxComplete = roadmapCheckboxStates.get(num) === true ||
+                roadmapCheckboxStates.get(stripped) === true;
+            const status = checkboxComplete ? 'complete' : 'not_started';
+            const phaseInfo = {
+                number: num,
+                name: name.toLowerCase().replace(/[^a-z0-9]+/g, '-').replace(/^-+|-+$/g, ''),
+                directory: null,
+                status,
+                plan_count: 0,
+                summary_count: 0,
+                has_research: false,
+            };
+            phases.push(phaseInfo);
+            if (!nextPhase && !currentPhase && status !== 'complete') {
+                nextPhase = phaseInfo;
+            }
+        }
+    }
+    phases.sort((a, b) => parseInt(a['number'], 10) - parseInt(b['number'], 10));
+    let pausedAt = null;
+    const state = (0, shell_command_projection_cjs_1.platformReadSync)(node_path_1.default.join(planningDir(cwd), 'STATE.md'));
+    if (state !== null) {
+        const pauseMatch = state.match(/\*\*Paused At:\*\*\s*(.+)/);
+        if (pauseMatch)
+            pausedAt = pauseMatch[1].trim();
+    }
+    const result = {
+        executor_model: resolveModelInternal(cwd, 'gsd-executor'),
+        planner_model: resolveModelInternal(cwd, 'gsd-planner'),
+        commit_docs: config.commit_docs,
+        milestone_version: milestone['version'],
+        milestone_name: milestone['name'],
+        phases,
+        phase_count: phases.length,
+        completed_count: phases.filter((p) => p['status'] === 'complete').length,
+        in_progress_count: phases.filter((p) => p['status'] === 'in_progress').length,
+        current_phase: currentPhase,
+        next_phase: nextPhase,
+        paused_at: pausedAt,
+        has_work_in_progress: !!currentPhase,
+        project_exists: pathExistsInternal(cwd, '.planning/PROJECT.md'),
+        roadmap_exists: node_fs_1.default.existsSync(node_path_1.default.join(planningDir(cwd), 'ROADMAP.md')),
+        state_exists: node_fs_1.default.existsSync(node_path_1.default.join(planningDir(cwd), 'STATE.md')),
+        state_path: toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningDir(cwd), 'STATE.md'))),
+        roadmap_path: toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningDir(cwd), 'ROADMAP.md'))),
+        project_path: '.planning/PROJECT.md',
+        config_path: toPosixPath(node_path_1.default.relative(cwd, node_path_1.default.join(planningDir(cwd), 'config.json'))),
+    };
+    output(withProjectRoot(cwd, result), raw);
+}
+function detectChildRepos(dir) {
+    const repos = [];
+    let entries;
+    try {
+        entries = node_fs_1.default.readdirSync(dir, { withFileTypes: true });
+    }
+    catch {
+        return repos;
+    }
+    for (const entry of entries) {
+        if (!entry.isDirectory())
+            continue;
+        if (entry.name.startsWith('.'))
+            continue;
+        const fullPath = node_path_1.default.join(dir, entry.name);
+        const gitDir = node_path_1.default.join(fullPath, '.git');
+        if (node_fs_1.default.existsSync(gitDir)) {
+            const statusResult = (0, shell_command_projection_cjs_1.execGit)(['status', '--porcelain'], {
+                cwd: fullPath,
+                timeout: 5000,
+            });
+            const hasUncommitted = statusResult['exitCode'] === 0 &&
+                statusResult['stdout'].length > 0;
+            repos.push({ name: entry.name, path: fullPath, has_uncommitted: hasUncommitted });
+        }
+    }
+    return repos;
+}
+function cmdInitNewWorkspace(cwd, raw) {
+    const homedir = process.env['HOME'] || node_os_1.default.homedir();
+    const defaultBase = node_path_1.default.join(homedir, 'gsd-workspaces');
+    const childRepos = detectChildRepos(cwd);
+    const gitVersion = (0, shell_command_projection_cjs_1.execGit)(['--version'], { timeout: 5000 });
+    const worktreeAvailable = gitVersion['exitCode'] === 0;
+    const result = {
+        default_workspace_base: defaultBase,
+        child_repos: childRepos,
+        child_repo_count: childRepos.length,
+        worktree_available: worktreeAvailable,
+        is_git_repo: pathExistsInternal(cwd, '.git'),
+        cwd_repo_name: node_path_1.default.basename(cwd),
+    };
+    output(withProjectRoot(cwd, result), raw);
+}
+function cmdInitListWorkspaces(cwd, raw) {
+    const homedir = process.env['HOME'] || node_os_1.default.homedir();
+    const defaultBase = node_path_1.default.join(homedir, 'gsd-workspaces');
+    const workspaces = [];
+    if (node_fs_1.default.existsSync(defaultBase)) {
+        let entries;
+        try {
+            entries = node_fs_1.default.readdirSync(defaultBase, { withFileTypes: true });
+        }
+        catch {
+            entries = [];
+        }
+        for (const entry of entries) {
+            if (!entry.isDirectory())
+                continue;
+            const wsPath = node_path_1.default.join(defaultBase, entry.name);
+            const manifestPath = node_path_1.default.join(wsPath, 'WORKSPACE.md');
+            if (!node_fs_1.default.existsSync(manifestPath))
+                continue;
+            let repoCount = 0;
+            let hasProject = false;
+            let strategy = 'unknown';
+            const manifest = (0, shell_command_projection_cjs_1.platformReadSync)(manifestPath);
+            if (manifest !== null) {
+                const strategyMatch = manifest.match(/^Strategy:\s*(.+)$/m);
+                if (strategyMatch)
+                    strategy = strategyMatch[1].trim();
+                const tableRows = manifest
+                    .split('\n')
+                    .filter((l) => l.match(/^\|\s*\w/) && !l.includes('Repo') && !l.includes('---'));
+                repoCount = tableRows.length;
+            }
+            hasProject = node_fs_1.default.existsSync(node_path_1.default.join(wsPath, '.planning', 'PROJECT.md'));
+            workspaces.push({
+                name: entry.name,
+                path: wsPath,
+                repo_count: repoCount,
+                strategy,
+                has_project: hasProject,
+            });
+        }
+    }
+    const result = {
+        workspace_base: defaultBase,
+        workspaces,
+        workspace_count: workspaces.length,
+    };
+    output(result, raw);
+}
+function cmdInitRemoveWorkspace(cwd, name, raw) {
+    const homedir = process.env['HOME'] || node_os_1.default.homedir();
+    const defaultBase = node_path_1.default.join(homedir, 'gsd-workspaces');
+    if (!name) {
+        error('workspace name required for init remove-workspace');
+    }
+    const wsPath = node_path_1.default.join(defaultBase, name);
+    const manifestPath = node_path_1.default.join(wsPath, 'WORKSPACE.md');
+    if (!node_fs_1.default.existsSync(wsPath)) {
+        error(`Workspace not found: ${wsPath}`);
+    }
+    const repos = [];
+    let strategy = 'unknown';
+    const manifestContent = (0, shell_command_projection_cjs_1.platformReadSync)(manifestPath);
+    if (manifestContent !== null) {
+        try {
+            const manifest = manifestContent;
+            const strategyMatch = manifest.match(/^Strategy:\s*(.+)$/m);
+            if (strategyMatch)
+                strategy = strategyMatch[1].trim();
+            const lines = manifest.split('\n');
+            for (const line of lines) {
+                const lineMatch = line.match(/^\|\s*(\S+)\s*\|\s*(\S+)\s*\|\s*(\S+)\s*\|\s*(\S+)\s*\|$/);
+                if (lineMatch && lineMatch[1] !== 'Repo' && !lineMatch[1].includes('---')) {
+                    repos.push({
+                        name: lineMatch[1],
+                        source: lineMatch[2],
+                        branch: lineMatch[3],
+                        strategy: lineMatch[4],
+                    });
+                }
+            }
+        }
+        catch {
+            /* best-effort */
+        }
+    }
+    const dirtyRepos = [];
+    for (const repo of repos) {
+        const repoPath = node_path_1.default.join(wsPath, repo.name);
+        if (!node_fs_1.default.existsSync(repoPath))
+            continue;
+        const statusResult = (0, shell_command_projection_cjs_1.execGit)(['status', '--porcelain'], {
+            cwd: repoPath,
+            timeout: 5000,
+        });
+        if (statusResult['exitCode'] === 0 &&
+            statusResult['stdout'].length > 0) {
+            dirtyRepos.push(repo.name);
+        }
+    }
+    const result = {
+        workspace_name: name,
+        workspace_path: wsPath,
+        has_manifest: node_fs_1.default.existsSync(manifestPath),
+        strategy,
+        repos,
+        repo_count: repos.length,
+        dirty_repos: dirtyRepos,
+        has_dirty_repos: dirtyRepos.length > 0,
+    };
+    output(result, raw);
+}
+function buildAgentSkillsBlock(config, agentType, projectRoot) {
+    const runtime = (config && config['runtime']) || 'claude';
+    const globalSkillsBase = (0, runtime_homes_cjs_1.getGlobalSkillsBase)(runtime);
+    if (!config || !config['agent_skills'] || !agentType)
+        return '';
+    let skillPaths = config['agent_skills'][agentType];
+    if (!skillPaths)
+        return '';
+    if (typeof skillPaths === 'string')
+        skillPaths = [skillPaths];
+    if (!Array.isArray(skillPaths) || skillPaths.length === 0)
+        return '';
+    const validPaths = [];
+    for (const skillPath of skillPaths) {
+        if (typeof skillPath !== 'string')
+            continue;
+        if (skillPath.startsWith('global:')) {
+            const skillName = skillPath.slice(7);
+            if (!skillName) {
+                process.stderr.write(`[agent-skills] WARNING: "global:" prefix with empty skill name — skipping\n`);
+                continue;
+            }
+            if (!/^[a-zA-Z0-9_-]+$/.test(skillName)) {
+                process.stderr.write(`[agent-skills] WARNING: Invalid global skill name "${skillName}" — skipping\n`);
+                continue;
+            }
+            if (globalSkillsBase === null) {
+                process.stderr.write(`[agent-skills] WARNING: Runtime "${runtime}" does not use a skills directory — "global:${skillName}" is not supported on this runtime\n`);
+                continue;
+            }
+            const globalSkillDir = (0, runtime_homes_cjs_1.getGlobalSkillDir)(runtime, skillName);
+            const globalSkillMd = node_path_1.default.join(globalSkillDir, 'SKILL.md');
+            const displayPath = (0, runtime_homes_cjs_1.getGlobalSkillDisplayPath)(runtime, skillName);
+            if (!node_fs_1.default.existsSync(globalSkillMd)) {
+                process.stderr.write(`[agent-skills] WARNING: Global skill not found at "${displayPath}/SKILL.md" — skipping\n`);
+                continue;
+            }
+            const pathCheck = (0, security_cjs_1.validatePath)(globalSkillMd, globalSkillsBase, { allowAbsolute: true });
+            if (!pathCheck['safe']) {
+                process.stderr.write(`[agent-skills] WARNING: Global skill "${skillName}" failed path check (symlink escape?) — skipping\n`);
+                continue;
+            }
+            validPaths.push({ ref: `${globalSkillDir}/SKILL.md`, display: displayPath });
+            continue;
+        }
+        const pathCheck = (0, security_cjs_1.validatePath)(skillPath, projectRoot);
+        if (!pathCheck['safe']) {
+            process.stderr.write(`[agent-skills] WARNING: Skipping unsafe path "${skillPath}": ${pathCheck['error']}\n`);
+            continue;
+        }
+        const skillMdPath = node_path_1.default.join(projectRoot, skillPath, 'SKILL.md');
+        if (!node_fs_1.default.existsSync(skillMdPath)) {
+            process.stderr.write(`[agent-skills] WARNING: Skill not found at "${skillPath}/SKILL.md" — skipping\n`);
+            continue;
+        }
+        validPaths.push({ ref: `${skillPath}/SKILL.md`, display: skillPath });
+    }
+    if (validPaths.length === 0)
+        return '';
+    const lines = validPaths.map((p) => `- @${p.ref}`).join('\n');
+    return `<agent_skills>\nRead these user-configured skills:\n${lines}\n</agent_skills>`;
+}
+function cmdAgentSkills(cwd, agentType, raw, jsonMode) {
+    if (!agentType) {
+        output('', raw, '');
+        return;
+    }
+    const config = loadConfig(cwd);
+    const block = buildAgentSkillsBlock(config, agentType, cwd);
+    if (jsonMode) {
+        const skillPaths = (config && config.agent_skills && config.agent_skills[agentType]) || [];
+        const normalizedPaths = Array.isArray(skillPaths)
+            ? skillPaths
+            : skillPaths
+                ? [skillPaths]
+                : [];
+        output({ agent_type: agentType, block: block || '', skills_count: normalizedPaths.length }, raw);
+        return;
+    }
+    if (block) {
+        process.stdout.write(block);
+    }
+    process.exit(0);
+}
+function buildSkillManifest(cwd, skillsDir = null) {
+    const canonicalRoots = skillsDir
+        ? [
+            {
+                root: node_path_1.default.resolve(skillsDir),
+                path: node_path_1.default.resolve(skillsDir),
+                scope: 'custom',
+                present: node_fs_1.default.existsSync(skillsDir),
+                kind: 'skills',
+            },
+        ]
+        : [
+            {
+                root: '.claude/skills',
+                path: node_path_1.default.join(cwd, '.claude', 'skills'),
+                scope: 'project',
+                kind: 'skills',
+            },
+            {
+                root: '.agents/skills',
+                path: node_path_1.default.join(cwd, '.agents', 'skills'),
+                scope: 'project',
+                kind: 'skills',
+            },
+            {
+                root: '.cursor/skills',
+                path: node_path_1.default.join(cwd, '.cursor', 'skills'),
+                scope: 'project',
+                kind: 'skills',
+            },
+            {
+                root: '.github/skills',
+                path: node_path_1.default.join(cwd, '.github', 'skills'),
+                scope: 'project',
+                kind: 'skills',
+            },
+            {
+                root: '.codex/skills',
+                path: node_path_1.default.join(cwd, '.codex', 'skills'),
+                scope: 'project',
+                kind: 'skills',
+            },
+            {
+                root: '~/.claude/skills',
+                path: (0, runtime_homes_cjs_1.getGlobalSkillsBase)('claude'),
+                scope: 'global',
+                kind: 'skills',
+            },
+            {
+                root: '~/.codex/skills',
+                path: (0, runtime_homes_cjs_1.getGlobalSkillsBase)('codex'),
+                scope: 'global',
+                kind: 'skills',
+            },
+            {
+                root: '.claude/gsd-core/skills',
+                path: node_path_1.default.join(node_os_1.default.homedir(), '.claude', 'gsd-core', 'skills'),
+                scope: 'import-only',
+                kind: 'skills',
+                deprecated: true,
+            },
+            {
+                root: '.claude/commands/gsd',
+                path: node_path_1.default.join(node_os_1.default.homedir(), '.claude', 'commands', 'gsd'),
+                scope: 'legacy-commands',
+                kind: 'commands',
+                deprecated: true,
+            },
+        ];
+    const skills = [];
+    const roots = [];
+    let legacyClaudeCommandsInstalled = false;
+    for (const rootInfo of canonicalRoots) {
+        const rootPath = rootInfo.path;
+        const rootSummary = {
+            root: rootInfo.root,
+            path: rootPath,
+            scope: rootInfo.scope,
+            present: node_fs_1.default.existsSync(rootPath),
+            deprecated: !!rootInfo.deprecated,
+        };
+        if (!rootSummary.present) {
+            roots.push(rootSummary);
+            continue;
+        }
+        if (rootInfo.kind === 'commands') {
+            let entries = [];
+            try {
+                entries = node_fs_1.default.readdirSync(rootPath, { withFileTypes: true });
+            }
+            catch {
+                roots.push(rootSummary);
+                continue;
+            }
+            const commandFiles = entries.filter((entry) => entry.isFile() && entry.name.endsWith('.md'));
+            rootSummary.command_count = commandFiles.length;
+            if (rootSummary.command_count > 0)
+                legacyClaudeCommandsInstalled = true;
+            roots.push(rootSummary);
+            continue;
+        }
+        let entries;
+        try {
+            entries = node_fs_1.default.readdirSync(rootPath, { withFileTypes: true });
+        }
+        catch {
+            roots.push(rootSummary);
+            continue;
+        }
+        let skillCount = 0;
+        for (const entry of entries) {
+            if (!entry.isDirectory())
+                continue;
+            const skillMdPath = node_path_1.default.join(rootPath, entry.name, 'SKILL.md');
+            const content = (0, shell_command_projection_cjs_1.platformReadSync)(skillMdPath);
+            if (content === null)
+                continue;
+            const frontmatter = extractFrontmatter(content);
+            const name = frontmatter['name'] || entry.name;
+            const description = frontmatter['description'] || '';
+            const triggers = [];
+            const bodyMatch = content.match(/^---[\s\S]*?---\s*\n([\s\S]*)$/);
+            if (bodyMatch) {
+                const body = bodyMatch[1];
+                const triggerLines = body.match(/^TRIGGER\s+when:\s*(.+)$/gmi);
+                if (triggerLines) {
+                    for (const line of triggerLines) {
+                        const m = line.match(/^TRIGGER\s+when:\s*(.+)$/i);
+                        if (m)
+                            triggers.push(m[1].trim());
+                    }
+                }
+            }
+            skills.push({
+                name,
+                description,
+                triggers,
+                path: entry.name,
+                file_path: `${entry.name}/SKILL.md`,
+                root: rootInfo.root,
+                scope: rootInfo.scope,
+                installed: rootInfo.scope !== 'import-only',
+                deprecated: !!rootInfo.deprecated,
+            });
+            skillCount++;
+        }
+        rootSummary.skill_count = skillCount;
+        roots.push(rootSummary);
+    }
+    skills.sort((a, b) => {
+        const rootCmp = a.root.localeCompare(b.root);
+        return rootCmp !== 0 ? rootCmp : a.name.localeCompare(b.name);
+    });
+    const gsdSkillsInstalled = skills.some((skill) => skill.name.startsWith('gsd-'));
+    return {
+        skills,
+        roots,
+        installation: {
+            gsd_skills_installed: gsdSkillsInstalled,
+            legacy_claude_commands_installed: legacyClaudeCommandsInstalled,
+        },
+        counts: {
+            skills: skills.length,
+            roots: roots.length,
+        },
+    };
+}
+function cmdSkillManifest(cwd, args, raw) {
+    const skillsDirIdx = args.indexOf('--skills-dir');
+    const skillsDir = skillsDirIdx >= 0 && args[skillsDirIdx + 1] ? args[skillsDirIdx + 1] : null;
+    const manifest = buildSkillManifest(cwd, skillsDir);
+    if (args.includes('--write')) {
+        const planDir = node_path_1.default.join(cwd, '.planning');
+        if (node_fs_1.default.existsSync(planDir)) {
+            const manifestPath = node_path_1.default.join(planDir, 'skill-manifest.json');
+            (0, shell_command_projection_cjs_1.platformWriteSync)(manifestPath, JSON.stringify(manifest, null, 2));
+        }
+    }
+    output(manifest, raw);
+}
+module.exports = {
+    cmdInitExecutePhase,
+    cmdInitPlanPhase,
+    cmdInitNewProject,
+    cmdInitNewMilestone,
+    cmdInitQuick,
+    cmdInitIngestDocs,
+    cmdInitResume,
+    cmdInitVerifyWork,
+    cmdInitPhaseOp,
+    cmdInitTodos,
+    cmdInitMilestoneOp,
+    cmdInitMapCodebase,
+    cmdInitProgress,
+    cmdInitManager,
+    cmdInitNewWorkspace,
+    cmdInitListWorkspaces,
+    cmdInitRemoveWorkspace,
+    detectChildRepos,
+    buildAgentSkillsBlock,
+    cmdAgentSkills,
+    buildSkillManifest,
+    cmdSkillManifest,
+};