@openez-graph/cli 1.3.0 → 1.3.1

package/dist/CHANGELOG.md

@@ -5,6 +5,14 @@ All notable changes to OpenEZ Graph are documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [1.3.1] - 2026-08-16
+
+### Fixed
+
+- **Reindex and DB open performance on large workspaces** — `openez status` and `openez reindex` on a 92K-chunk workspace (e.g. Zed) went from >8 minutes (100% CPU, never completing) to ~0.15s (status) and ~25s (reindex). Two root causes fixed:
+  - **FTS repair scan on every DB open** — `initializeWorkspaceSchema` ran an O(n²) `LEFT JOIN chunks_fts` (chunk_id is UNINDEXED in FTS5) plus an orphan-cleanup `DELETE ... NOT IN` on every open, even when FTS was fully in sync. Now skips the expensive repair when a count + shape check confirms FTS is in sync, and only runs the full repair when counts diverge or orphaned rows are detected.
+  - **FTS trigger storm during full reindex** — `resetIndexArtifacts` deleted 92K chunks with FTS triggers active, firing 92K triggered `DELETE FROM chunks_fts WHERE chunk_id = old.id` (each a full FTS shadow-table scan). Now drops FTS triggers and the FTS table before deleting chunks, then recreates an empty FTS table for the reindex to populate via `bulkInsertFts`.
+
 ## [1.3.0] - 2026-08-15
 
 ### Added
@@ -299,6 +307,7 @@ Remediation release — index/graph correctness, data protection, and web flow f
 - Error handling and validation for import path extraction
 - CLI npm packaging
 
+[1.3.1]: https://github.com/asta-nguyen/openez-graph/compare/v1.3.0...v1.3.1
 [1.2.0]: https://github.com/asta-nguyen/openez-graph/compare/v1.1.0...v1.2.0
 [1.3.0]: https://github.com/asta-nguyen/openez-graph/compare/v1.2.0...v1.3.0
 [1.1.0]: https://github.com/asta-nguyen/openez-graph/compare/v1.0.3...v1.1.0

package/dist/cli.cjs

@@ -11910,6 +11910,13 @@ function createFtsOps(native, stmts, deps) {
     },
     // ── Reset ──
     resetIndexArtifacts() {
+      native.exec("DROP TRIGGER IF EXISTS chunks_fts_insert");
+      native.exec("DROP TRIGGER IF EXISTS chunks_fts_delete");
+      native.exec("DROP TRIGGER IF EXISTS chunks_fts_update");
+      native.exec("DROP TABLE IF EXISTS chunks_fts");
+      native.exec(
+        "CREATE VIRTUAL TABLE chunks_fts USING fts5(chunk_id UNINDEXED, path, heading, language, search_text, tokenize = 'unicode61')"
+      );
       native.exec("DELETE FROM graph_edges");
       native.exec("DELETE FROM graph_nodes");
       native.exec("DELETE FROM chunks");
@@ -12114,20 +12121,36 @@ function initializeWorkspaceSchema(sqlite) {
         INNER JOIN documents d ON d.id = c.document_id;
       `);
     } else {
-      sqlite.exec(`
-        INSERT INTO chunks_fts (chunk_id, path, heading, language, search_text)
-        SELECT c.id, d.path, coalesce(c.heading, ''),
-          coalesce(d.language, ''),
-          ${composeFtsSearchTextSql("c.metadata", "c.content")}
-        FROM chunks c
-        INNER JOIN documents d ON d.id = c.document_id
-        LEFT JOIN chunks_fts f ON f.chunk_id = c.id
-        WHERE f.chunk_id IS NULL;
-      `);
-      sqlite.exec(`
-        DELETE FROM chunks_fts
-        WHERE chunk_id NOT IN (SELECT id FROM chunks);
-      `);
+      const chunkCount = sqlite.prepare("SELECT count(*) as c FROM chunks").get().c;
+      const ftsCount = sqlite.prepare("SELECT count(*) as c FROM chunks_fts").get().c;
+      let ftsInSync = chunkCount === ftsCount;
+      if (ftsInSync) {
+        const ftsShape = sqlite.prepare(
+          `
+            SELECT count(DISTINCT f.chunk_id) AS distinct_count,
+              count(*) - count(c.id) AS orphan_count
+            FROM chunks_fts f
+            LEFT JOIN chunks c ON c.id = f.chunk_id
+          `
+        ).get();
+        ftsInSync = ftsShape.distinct_count === chunkCount && ftsShape.orphan_count === 0;
+      }
+      if (!ftsInSync) {
+        sqlite.exec(`
+          INSERT INTO chunks_fts (chunk_id, path, heading, language, search_text)
+          SELECT c.id, d.path, coalesce(c.heading, ''),
+            coalesce(d.language, ''),
+            ${composeFtsSearchTextSql("c.metadata", "c.content")}
+          FROM chunks c
+          INNER JOIN documents d ON d.id = c.document_id
+          LEFT JOIN chunks_fts f ON f.chunk_id = c.id
+          WHERE f.chunk_id IS NULL;
+        `);
+        sqlite.exec(`
+          DELETE FROM chunks_fts
+          WHERE chunk_id NOT IN (SELECT id FROM chunks);
+        `);
+      }
     }
     const hasTypeLabelIdx = sqlite.prepare(
       "SELECT count(*) as c FROM sqlite_master WHERE type='index' AND name='idx_graph_nodes_type_label'"
@@ -60267,7 +60290,7 @@ __export(mcp_bridge_exports, {
   startMcpServer: () => startMcpServer
 });
 async function startMcpServer(defaultPath, version4) {
-  await createAndStartMcpServer({ defaultPath, version: version4, build: "dcb4ee5-dirty" });
+  await createAndStartMcpServer({ defaultPath, version: version4, build: "5060798-dirty" });
 }
 var init_mcp_bridge = __esm({
   "src/mcp-bridge.ts"() {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@openez-graph/cli",
-  "version": "1.3.0",
+  "version": "1.3.1",
   "description": "Local-first code intelligence engine — index, query, and graph your codebase with zero config. SQLite-only, MCP-first.",
   "license": "MIT",
   "author": "Asta Nguyen",