@opencodehub/cli 0.1.0

package/LICENSE

@@ -0,0 +1,202 @@
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package/README.md

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+# @opencodehub/cli
+
+```bash
+# global install
+npm install -g @opencodehub/cli
+
+# or run without installing
+npx @opencodehub/cli --help
+```
+
+Then bootstrap any repo:
+
+```bash
+cd /path/to/your/repo
+codehub init      # writes .mcp.json, Claude Code plugin, .gitignore entry
+codehub analyze   # index the repo
+codehub mcp       # start the stdio MCP server (your agent calls this)
+```
+
+The `codehub` command-line front end. Every subcommand lazy-loads its
+implementation so `codehub --help` stays fast — no DuckDB binding, no
+pipeline, no MCP SDK is initialised until the matching action runs
+(`packages/cli/src/index.ts:1-13`).
+
+## Surface
+
+```bash
+codehub <command> [options]
+```
+
+- The CLI binary is the only OpenCodeHub-distributed UX. There is no
+  daemon, no hosted service, and no second transport — agents talk to
+  OpenCodeHub through the stdio MCP server launched by `codehub mcp`.
+- Errors print as `codehub: <message>` and set exit code 1
+  (`packages/cli/src/index.ts:860-864`).
+
+## Commands
+
+Registered in `packages/cli/src/index.ts:14-737`. The table groups the 25
+top-level subcommands by phase of the workflow.
+
+| Command            | Purpose                                                                    |
+| ------------------ | -------------------------------------------------------------------------- |
+| `init`             | Bootstrap a repo: `.claude/`, `.mcp.json`, `.gitignore`, policy seed       |
+| `setup`            | Write MCP config for editors, fetch embedder weights, install SCIP tools  |
+| `analyze`          | Run the 31-phase ingestion pipeline against a repo                         |
+| `index`            | Register an existing `.codehub/` folder without re-analysing               |
+| `status`           | Show registry metadata + index freshness for a repo                        |
+| `list`             | Enumerate every repo registered on this machine                            |
+| `clean`            | Delete one or all registered indexes                                       |
+| `mcp`              | Launch the stdio MCP server                                                |
+| `query`            | Hybrid BM25 + vector search against a repo's graph                         |
+| `context`          | 360-degree view of a symbol — callers, callees, flows                      |
+| `impact`           | Blast-radius traversal up/down/both with risk tier                         |
+| `detect-changes`   | Map an uncommitted or committed diff onto affected symbols + processes     |
+| `verdict`          | 5-tier PR decision (`auto_merge`/`single_review`/.../`block`)              |
+| `scan`             | Run Priority-1 scanners and ingest findings into the graph                 |
+| `ingest-sarif`     | Ingest an external SARIF 2.1.0 log into the graph                          |
+| `pack`             | Single-file LLM snapshot via repomix (AST-compressed)                      |
+| `code-pack`        | Deterministic 9-item BOM under `.codehub/packs/<packHash>/`                |
+| `wiki`             | Emit a Markdown wiki tree (deterministic, optionally LLM-narrated)         |
+| `bench`            | Run the acceptance gate suite and render a pass/fail dashboard             |
+| `doctor`           | Probe the local environment and print actionable hints                     |
+| `ci-init`          | Emit GitHub Actions / GitLab CI workflow scaffolds                         |
+| `augment`          | Fast-path BM25 enrichment for editor PreToolUse hooks                      |
+| `sql`              | Read-only SQL against the graph store with a 5 s timeout                   |
+| `group <sub>`      | Cross-repo groups: `create`, `list`, `delete`, `status`, `query`, `sync`   |
+
+## Design
+
+- **Lazy loading** — each `.action()` does `await import(...)` so cold
+  startup is bounded by Commander, not DuckDB or the parse pool
+  (`packages/cli/src/index.ts:78-81`).
+- **No stateful daemon** — `analyze` runs to completion and exits;
+  `mcp` is the only long-running process.
+- **Registry on disk** — `~/.codehub/registry.json` enumerates indexed
+  repos; per-repo state lives under `<repo>/.codehub/`
+  (`packages/cli/src/registry.ts`).
+- **Env-toggle defaults** — `OCH_NATIVE_PARSER`, `CODEHUB_STORE`,
+  `CODEHUB_BEDROCK_DISABLED` flip behaviour without touching flags.
+- **`mcp` is launched, never embedded** — agents that need the MCP
+  surface spawn `codehub mcp` over stdio (`packages/cli/src/commands/mcp.ts`).
+
+See ADR 0013 for the storage-backend toggle and the root README's
+"MCP tool surface" section for the agent-facing tool inventory.

package/dist/agent-context.d.ts

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+/**
+ * AGENTS.md / CLAUDE.md stanza writer.
+ *
+ * When a repo is analyzed we update (or create) two agent-discovery files at
+ * the repo root — `AGENTS.md` and `CLAUDE.md`. Each gets the same stanza
+ * describing the 7 OpenCodeHub MCP tools, so any agent opening the repo knows
+ * what is available and how to call it.
+ *
+ * Clean-room authored. The stanza text below was written for OpenCodeHub; no
+ * prompt wording was copied from any prior tool. Callers can replace the
+ * stanza via the `{ stanza }` option for tests or custom branding.
+ *
+ * Behavior:
+ *   - If the file does not exist → create it with just the stanza.
+ *   - If it exists and already contains an `## OpenCodeHub MCP Tools` section
+ *     → replace that section in place, preserving everything before/after.
+ *   - If it exists and has no such section → append the stanza (preceded by a
+ *     blank line when needed).
+ */
+export declare const STANZA_HEADING = "## OpenCodeHub MCP Tools";
+/** Default stanza body. Clean-room authored — keep short, keep accurate. */
+export declare const DEFAULT_STANZA = "## OpenCodeHub MCP Tools\n\nThis repository has been indexed by OpenCodeHub. When you are working in this\ncodebase, prefer the following MCP tools over raw file search \u2014 they return\ngraph-aware results grouped by execution flow and include blast-radius risk\ntiers.\n\n- `list_repos` \u2014 enumerate repos currently indexed on this machine.\n- `query` \u2014 hybrid BM25 + vector search over symbols, grouped by process.\n- `context` \u2014 inbound/outbound refs and participating flows for one symbol.\n- `impact` \u2014 dependents of a target up to a configurable depth, with a risk tier.\n- `detect_changes` \u2014 map an uncommitted or committed diff to affected symbols.\n- `rename` \u2014 graph-assisted multi-file rename; dry-run is the default.\n- `sql` \u2014 read-only SQL against the local graph store with a 5 s timeout.\n\nRun `codehub analyze` after pulling new commits so the index stays aligned\nwith the working tree. `codehub status` reports staleness.\n";
+/** Files we manage. Order matters only for deterministic test output. */
+export declare const AGENT_CONTEXT_FILES: readonly string[];
+export interface WriteStanzaOptions {
+    /** Override the stanza body (must start with `## OpenCodeHub MCP Tools`). */
+    readonly stanza?: string;
+}
+export interface WriteStanzaResult {
+    readonly file: string;
+    readonly action: "created" | "replaced" | "appended";
+}
+/**
+ * Write the stanza into both `AGENTS.md` and `CLAUDE.md` at `repoPath`.
+ * Returns per-file results so the caller can log what it did.
+ */
+export declare function writeAgentContextFiles(repoPath: string, opts?: WriteStanzaOptions): Promise<readonly WriteStanzaResult[]>;
+/**
+ * Write (or merge) the stanza into a single file. Exposed for tests and for
+ * callers that want to target a bespoke file path.
+ */
+export declare function writeStanza(file: string, opts?: WriteStanzaOptions): Promise<WriteStanzaResult>;
+/**
+ * Replace a prior `## OpenCodeHub MCP Tools` section with `stanza`, or append
+ * `stanza` at the end. The section extends from the heading up to (but not
+ * including) the next `## ` heading, or end-of-file.
+ *
+ * Exposed for tests; pure string transform, no IO.
+ */
+export declare function replaceOrAppendStanza(existing: string, stanza: string): {
+    replaced: boolean;
+    output: string;
+};
+//# sourceMappingURL=agent-context.d.ts.map

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package/dist/agent-context.js

@@ -0,0 +1,122 @@
+/**
+ * AGENTS.md / CLAUDE.md stanza writer.
+ *
+ * When a repo is analyzed we update (or create) two agent-discovery files at
+ * the repo root — `AGENTS.md` and `CLAUDE.md`. Each gets the same stanza
+ * describing the 7 OpenCodeHub MCP tools, so any agent opening the repo knows
+ * what is available and how to call it.
+ *
+ * Clean-room authored. The stanza text below was written for OpenCodeHub; no
+ * prompt wording was copied from any prior tool. Callers can replace the
+ * stanza via the `{ stanza }` option for tests or custom branding.
+ *
+ * Behavior:
+ *   - If the file does not exist → create it with just the stanza.
+ *   - If it exists and already contains an `## OpenCodeHub MCP Tools` section
+ *     → replace that section in place, preserving everything before/after.
+ *   - If it exists and has no such section → append the stanza (preceded by a
+ *     blank line when needed).
+ */
+import { mkdir, readFile } from "node:fs/promises";
+import { dirname, resolve } from "node:path";
+import { writeFileAtomic } from "./fs-atomic.js";
+export const STANZA_HEADING = "## OpenCodeHub MCP Tools";
+/** Default stanza body. Clean-room authored — keep short, keep accurate. */
+export const DEFAULT_STANZA = `${STANZA_HEADING}
+
+This repository has been indexed by OpenCodeHub. When you are working in this
+codebase, prefer the following MCP tools over raw file search — they return
+graph-aware results grouped by execution flow and include blast-radius risk
+tiers.
+
+- \`list_repos\` — enumerate repos currently indexed on this machine.
+- \`query\` — hybrid BM25 + vector search over symbols, grouped by process.
+- \`context\` — inbound/outbound refs and participating flows for one symbol.
+- \`impact\` — dependents of a target up to a configurable depth, with a risk tier.
+- \`detect_changes\` — map an uncommitted or committed diff to affected symbols.
+- \`rename\` — graph-assisted multi-file rename; dry-run is the default.
+- \`sql\` — read-only SQL against the local graph store with a 5 s timeout.
+
+Run \`codehub analyze\` after pulling new commits so the index stays aligned
+with the working tree. \`codehub status\` reports staleness.
+`;
+/** Files we manage. Order matters only for deterministic test output. */
+export const AGENT_CONTEXT_FILES = ["AGENTS.md", "CLAUDE.md"];
+/**
+ * Write the stanza into both `AGENTS.md` and `CLAUDE.md` at `repoPath`.
+ * Returns per-file results so the caller can log what it did.
+ */
+export async function writeAgentContextFiles(repoPath, opts = {}) {
+    const results = [];
+    for (const name of AGENT_CONTEXT_FILES) {
+        const result = await writeStanza(resolve(repoPath, name), opts);
+        results.push(result);
+    }
+    return results;
+}
+/**
+ * Write (or merge) the stanza into a single file. Exposed for tests and for
+ * callers that want to target a bespoke file path.
+ */
+export async function writeStanza(file, opts = {}) {
+    const stanza = (opts.stanza ?? DEFAULT_STANZA).trimEnd();
+    let existing;
+    try {
+        existing = await readFile(file, "utf8");
+    }
+    catch (err) {
+        if (err.code !== "ENOENT")
+            throw err;
+        existing = undefined;
+    }
+    if (existing === undefined) {
+        await mkdir(dirname(file), { recursive: true });
+        await writeFileAtomic(file, `${stanza}\n`, { raw: true });
+        return { file, action: "created" };
+    }
+    const { replaced, output } = replaceOrAppendStanza(existing, stanza);
+    await writeFileAtomic(file, output, { raw: true });
+    return { file, action: replaced ? "replaced" : "appended" };
+}
+/**
+ * Replace a prior `## OpenCodeHub MCP Tools` section with `stanza`, or append
+ * `stanza` at the end. The section extends from the heading up to (but not
+ * including) the next `## ` heading, or end-of-file.
+ *
+ * Exposed for tests; pure string transform, no IO.
+ */
+export function replaceOrAppendStanza(existing, stanza) {
+    const lines = existing.split("\n");
+    const headingIndex = lines.findIndex((line) => line.trim() === STANZA_HEADING);
+    if (headingIndex === -1) {
+        if (existing.length === 0) {
+            return { replaced: false, output: `${stanza}\n` };
+        }
+        const base = existing.endsWith("\n") ? existing : `${existing}\n`;
+        // Ensure a blank line between prior content and our stanza.
+        const separator = base.endsWith("\n\n") ? "" : "\n";
+        return { replaced: false, output: `${base}${separator}${stanza}\n` };
+    }
+    // Find the end of the OpenCodeHub section: the next line that starts with
+    // `## ` (a sibling heading) at the same level. Lines starting with `###` or
+    // deeper are still part of our section.
+    let endIndex = lines.length;
+    for (let i = headingIndex + 1; i < lines.length; i += 1) {
+        const line = lines[i];
+        if (line === undefined)
+            continue;
+        if (line.startsWith("## ") && !line.startsWith("### ")) {
+            endIndex = i;
+            break;
+        }
+    }
+    const before = lines.slice(0, headingIndex).join("\n");
+    const after = lines.slice(endIndex).join("\n");
+    const beforeBlock = before.length === 0 ? "" : before.endsWith("\n") ? before : `${before}\n`;
+    const afterBlock = after.length === 0 ? "" : after.startsWith("\n") ? after : `\n${after}`;
+    const output = `${beforeBlock}${stanza}\n${afterBlock}`;
+    // Collapse a double-trailing newline if afterBlock was empty.
+    const normalized = output.endsWith("\n") ? output : `${output}\n`;
+    return { replaced: true, output: normalized };
+}
+//# sourceMappingURL=agent-context.js.map

package/dist/agent-context.js.map

@@ -0,0 +1 @@
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package/dist/cobol-proleap-setup.d.ts

@@ -0,0 +1,77 @@
+/**
+ * `codehub setup --cobol-proleap` — one-time bootstrap for the COBOL
+ * deep-parse bridge.
+ *
+ * The uwol/cobol-parser library is NOT published to Maven Central as of 2026-04
+ * (search.maven.org returns 0 hits), and the latest GitHub Release is v2.4.0
+ * from 2018 — but master is on v4.x. So we build from source:
+ *
+ *   1. Probe for `git`, `mvn`, and `javac` (JDK 17+) on PATH. Missing tool
+ *      → refuse with a tool-specific install hint.
+ *   2. Resolve a temp workdir, `git clone --branch master https://github.com/uwol/cobol-parser`.
+ *   3. `mvn install -DskipTests` to build the JAR. Target artifact is
+ *      `<tmp>/target/proleap-cobol-parser-<ver>.jar`.
+ *   4. `javac -cp <jar> cobol_to_scip.java` — compile the wrapper class
+ *      (the `.java` source ships under `packages/cobol-proleap/java/`).
+ *   5. Atomic rename the JAR + compiled wrapper into
+ *      `~/.codehub/vendor/proleap/{proleap-cobol-parser-<ver>.jar,
+ *      cobol_to_scip.class}`.
+ *
+ * Every external-tool spawn goes through the `ProcessApi` seam so tests
+ * can stub the whole pipeline without shelling out for real.
+ */
+export declare const COBOL_PROLEAP_REPO_URL = "https://github.com/uwol/cobol-parser";
+export declare const COBOL_PROLEAP_BRANCH = "master";
+export declare const MIN_JAVAC_MAJOR = 17;
+/** Process-spawn + fs seam. Tests replace with in-memory doubles. */
+export interface ProcessApi {
+    run(cmd: string, args: readonly string[], cwd?: string): Promise<ProcessResult>;
+    mkdtemp(prefix: string): Promise<string>;
+    mkdir(path: string): Promise<void>;
+    copyFile(src: string, dest: string): Promise<void>;
+    rename(src: string, dest: string): Promise<void>;
+    rm(path: string, opts?: {
+        recursive?: boolean;
+        force?: boolean;
+    }): Promise<void>;
+    readdir(path: string): Promise<readonly string[]>;
+    exists(path: string): Promise<boolean>;
+}
+export interface ProcessResult {
+    readonly code: number;
+    readonly stdout: string;
+    readonly stderr: string;
+}
+export declare const DEFAULT_PROCESS_API: ProcessApi;
+export interface SetupCobolProleapOptions {
+    /** Override the install dir. Default: `~/.codehub/vendor/proleap`. */
+    readonly vendorDir?: string;
+    /** Override the user home dir. Default: os.homedir(). */
+    readonly home?: string;
+    /** Override the Java source path. Default: resolved relative to the installed cli. */
+    readonly javaSourcePath?: string;
+    /** Force re-install even if the vendor dir already has a JAR. */
+    readonly force?: boolean;
+    /** Process / fs seam for tests. */
+    readonly processApi?: ProcessApi;
+    /** Structured logger. Defaults to `console.warn`. */
+    readonly log?: (message: string) => void;
+    readonly warn?: (message: string) => void;
+}
+export interface SetupCobolProleapResult {
+    readonly jarPath: string;
+    readonly wrapperClassPath: string;
+    readonly vendorDir: string;
+    readonly installed: boolean;
+    readonly skipped: boolean;
+}
+/**
+ * Run the setup. Returns the final install paths (jar + wrapper classpath
+ * dir) so the analyze runner can resolve them without re-walking the
+ * vendor dir. Throws on precondition failure with tool-specific install
+ * hints so the user can self-serve.
+ */
+export declare function runSetupCobolProleap(opts?: SetupCobolProleapOptions): Promise<SetupCobolProleapResult>;
+/** Default vendor dir. */
+export declare function defaultVendorDir(home?: string): string;
+//# sourceMappingURL=cobol-proleap-setup.d.ts.map

package/dist/cobol-proleap-setup.d.ts.map

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