@opencloning/ui 1.4.9 → 1.4.11

package/CHANGELOG.md

@@ -1,5 +1,25 @@
 # @opencloning/ui
 
+## 1.4.11
+
+### Patch Changes
+
+- [#644](https://github.com/manulera/OpenCloning_frontend/pull/644) [`27744a3`](https://github.com/manulera/OpenCloning_frontend/commit/27744a3e5cebd6d41cb11a76f3d4d367f5a4edc8) Thanks [@manulera](https://github.com/manulera)! - Fix graphToMSA
+
+- Updated dependencies []:
+  - @opencloning/store@1.4.11
+  - @opencloning/utils@1.4.11
+
+## 1.4.10
+
+### Patch Changes
+
+- [#642](https://github.com/manulera/OpenCloning_frontend/pull/642) [`3028e98`](https://github.com/manulera/OpenCloning_frontend/commit/3028e98b60be89288327cc1b6dac87cb2479a3c7) Thanks [@manulera](https://github.com/manulera)! - When downloading from assembler, if name is too long change to id_construct
+
+- Updated dependencies []:
+  - @opencloning/store@1.4.10
+  - @opencloning/utils@1.4.10
+
 ## 1.4.9
 
 ### Patch Changes

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@opencloning/ui",
-  "version": "1.4.9",
+  "version": "1.4.11",
   "type": "module",
   "main": "./src/index.js",
   "scripts": {
@@ -25,8 +25,8 @@
     "@emotion/styled": "^11.14.0",
     "@mui/icons-material": "^5.15.17",
     "@mui/material": "^5.15.17",
-    "@opencloning/store": "1.4.9",
-    "@opencloning/utils": "1.4.9",
+    "@opencloning/store": "1.4.11",
+    "@opencloning/utils": "1.4.11",
     "@teselagen/bio-parsers": "^0.4.34",
     "@teselagen/ove": "^0.8.34",
     "@teselagen/range-utils": "^0.3.20",

package/src/components/assembler/assembler_utils.js

@@ -168,7 +168,10 @@ export function getFilesToExportFromAssembler({requestedAssemblies, expandedAsse
   }
 
   for (let i = 0; i < requestedAssemblies.length; i++) {
-    const name = `${String(i + 1).padStart(3, '0')}_${assemblyNames[i].slice(1).join('+')}`;
+    let name = `${String(i + 1).padStart(3, '0')}_${assemblyNames[i].slice(1).join('+')}`;
+    if (name.length > 255) {
+      name = `${String(i + 1).padStart(3, '0')}_construct`;
+    }
     const requestedAssembly = requestedAssemblies[i];
     const jsonContent = formatStateForJsonExport({...requestedAssembly, appInfo});
     files2Export.push({

package/src/components/assembler/assembler_utils.test.js

@@ -285,8 +285,8 @@ const dummyData = {
 
 
 
-describe('getZipFileFromAssemblies', () => {
-  it('returns a zip file', () => {
+describe('getFilesToExportFromAssembler', () => {
+  it('returns the correct files', () => {
     const files = getFilesToExportFromAssembler(dummyData);
     expect(files[0].name).toBe('assemblies.tsv');
     expect(files[0].content).toBe('Assembly\tCategory 1\tCategory 2\tCategory 3\n1\tp1\tp5\tp7\n2\tp1\tp2\tp3');
@@ -310,4 +310,15 @@ describe('getZipFileFromAssemblies', () => {
 
 
   })
+  it('changes name if file names are too long', () => {
+    const dummyData2 = {
+      ...dummyData,
+      plasmids: dummyData.plasmids.map(plasmid => ({...plasmid, plasmid_name: 'p1'.repeat(100)})),
+    }
+    const files = getFilesToExportFromAssembler(dummyData2);
+    expect(files[2].name).toBe('001_construct.json');
+    expect(files[3].name).toBe('001_construct.gbk');
+    expect(files[4].name).toBe('002_construct.json');
+    expect(files[5].name).toBe('002_construct.gbk');
+  })
 })

package/src/components/assembler/graph_utils.js

@@ -144,7 +144,12 @@ function minimumCoveringRows(msa) {
 
 export function graphToMSA(graph) {
   if (graph.nodes().length === 0) return [];
-  const newGraph = openCycleAtNode(graph, graph.nodes()[0]);
+  const firstNodeLeftOverhang = graph.nodes()[0].split('-')[0];
+  const nodesToRemove = graph.nodes().filter(node => node.split('-')[0] === firstNodeLeftOverhang);
+  let newGraph = graph;
+  for (const node of nodesToRemove) {
+    newGraph = openCycleAtNode(newGraph, node);
+  }
   return minimumCoveringRows(dagToMSA(newGraph));
 }
 

package/src/version.js

@@ -1,2 +1,2 @@
 // Version placeholder - replaced at publish time via prepack script
-export const version = "1.4.9";
+export const version = "1.4.11";