@opencloning/ui 1.1.0-test.3 → 1.1.0

package/CHANGELOG.md

@@ -1,5 +1,46 @@
 # @opencloning/ui
 
+## 1.1.0
+
+### Minor Changes
+
+- [#570](https://github.com/manulera/OpenCloning_frontend/pull/570) [`83dab1c`](https://github.com/manulera/OpenCloning_frontend/commit/83dab1c2a7cca2b17aa8039b74d15c47e467b2f0) Thanks [@manulera](https://github.com/manulera)! - Switch to using provider for configuration rather than state
+
+- [#570](https://github.com/manulera/OpenCloning_frontend/pull/570) [`83dab1c`](https://github.com/manulera/OpenCloning_frontend/commit/83dab1c2a7cca2b17aa8039b74d15c47e467b2f0) Thanks [@manulera](https://github.com/manulera)! - Handle version display with scripts
+
+### Patch Changes
+
+- [#574](https://github.com/manulera/OpenCloning_frontend/pull/574) [`6df1c20`](https://github.com/manulera/OpenCloning_frontend/commit/6df1c2060d5776a30a00daaedfb0ec2cc685284d) Thanks [@manulera](https://github.com/manulera)! - Last dummy test to check if auto pre-release works
+
+- [#573](https://github.com/manulera/OpenCloning_frontend/pull/573) [`07106ac`](https://github.com/manulera/OpenCloning_frontend/commit/07106ac0c8f9321d0b33994ed086a76eb79739a3) Thanks [@manulera](https://github.com/manulera)! - Dummy change to test that new action works
+
+- [#570](https://github.com/manulera/OpenCloning_frontend/pull/570) [`83dab1c`](https://github.com/manulera/OpenCloning_frontend/commit/83dab1c2a7cca2b17aa8039b74d15c47e467b2f0) Thanks [@manulera](https://github.com/manulera)! - testing a test release to npm
+
+- [#570](https://github.com/manulera/OpenCloning_frontend/pull/570) [`83dab1c`](https://github.com/manulera/OpenCloning_frontend/commit/83dab1c2a7cca2b17aa8039b74d15c47e467b2f0) Thanks [@manulera](https://github.com/manulera)! - Fix imports from mui and icons library, and add husky hook to validate that it does not happen again
+
+- [#570](https://github.com/manulera/OpenCloning_frontend/pull/570) [`83dab1c`](https://github.com/manulera/OpenCloning_frontend/commit/83dab1c2a7cca2b17aa8039b74d15c47e467b2f0) Thanks [@manulera](https://github.com/manulera)! - Releases work on npm now through `YARN_NPM_AUTH_TOKEN=<> yarn changeset publish`, this is enabled by patch, see Readme. This properly handles workspaces (in package.json in each of the packages, `"@opencloning/store": "workspace:*",` is replaced by the actual version).
+
+- Updated dependencies [[`6df1c20`](https://github.com/manulera/OpenCloning_frontend/commit/6df1c2060d5776a30a00daaedfb0ec2cc685284d), [`83dab1c`](https://github.com/manulera/OpenCloning_frontend/commit/83dab1c2a7cca2b17aa8039b74d15c47e467b2f0), [`83dab1c`](https://github.com/manulera/OpenCloning_frontend/commit/83dab1c2a7cca2b17aa8039b74d15c47e467b2f0), [`83dab1c`](https://github.com/manulera/OpenCloning_frontend/commit/83dab1c2a7cca2b17aa8039b74d15c47e467b2f0), [`83dab1c`](https://github.com/manulera/OpenCloning_frontend/commit/83dab1c2a7cca2b17aa8039b74d15c47e467b2f0)]:
+  - @opencloning/store@1.1.0
+  - @opencloning/utils@1.1.0
+
+## 1.1.0-dev.5
+
+### Patch Changes
+
+- 6df1c20: Last dummy test to check if auto pre-release works
+- Updated dependencies [6df1c20]
+  - @opencloning/store@1.1.0-dev.5
+  - @opencloning/utils@1.1.0-dev.5
+
+## 1.1.0-dev.4
+
+### Patch Changes
+
+- 07106ac: Dummy change to test that new action works
+  - @opencloning/store@1.1.0-dev.4
+  - @opencloning/utils@1.1.0-dev.4
+
 ## 1.1.0-test.3
 
 ### Patch Changes

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@opencloning/ui",
-  "version": "1.1.0-test.3",
+  "version": "1.1.0",
   "type": "module",
   "main": "./src/index.js",
   "scripts": {
@@ -23,8 +23,8 @@
     "@emotion/styled": "^11.14.0",
     "@mui/icons-material": "^5.15.17",
     "@mui/material": "^5.15.17",
-    "@opencloning/store": "1.1.0-test.3",
-    "@opencloning/utils": "1.1.0-test.3",
+    "@opencloning/store": "1.1.0",
+    "@opencloning/utils": "1.1.0",
     "@teselagen/bio-parsers": "^0.4.32",
     "@teselagen/ove": "^0.8.18",
     "@teselagen/range-utils": "^0.3.13",

package/src/components/index.js

@@ -1 +1,2 @@
 export { default as OpenCloning } from './OpenCloning';
+export { default as MainAppBar } from './navigation/MainAppBar';

package/src/components/primers/PrimerTableRow.cy.jsx

@@ -1,14 +1,21 @@
 import React from 'react';
 import PrimerTableRow from './PrimerTableRow';
 import { mockPrimerDetails, mockPCRDetails, mockPrimer } from '../../../../../tests/mockPrimerDetailsData';
+import { ConfigProvider } from '../../providers/ConfigProvider';
+
+const config = {
+  backendUrl: 'http://127.0.0.1:8000',
+};
 
 describe('<PrimerTableRow />', () => {
   it('displays the right information with PCR details', () => {
     cy.mount(
-      <PrimerTableRow
-        primerDetails={mockPrimerDetails}
-        pcrDetails={mockPCRDetails}
-      />,
+      <ConfigProvider config={config}>
+        <PrimerTableRow
+          primerDetails={mockPrimerDetails}
+          pcrDetails={mockPCRDetails}
+        />
+      </ConfigProvider>,
     );
 
     cy.get('.name').should('contain', 'Test Primer');
@@ -19,10 +26,12 @@ describe('<PrimerTableRow />', () => {
   });
   it('displays the right information without PCR details', () => {
     cy.mount(
-      <PrimerTableRow
-        primerDetails={mockPrimerDetails}
-        pcrDetails={[]}
-      />,
+      <ConfigProvider config={config}>
+        <PrimerTableRow
+          primerDetails={mockPrimerDetails}
+          pcrDetails={[]}
+        />
+      </ConfigProvider>,
     );
     cy.get('.melting-temperature').should('contain', '60');
     cy.get('.gc-content').should('contain', '50');
@@ -30,10 +39,12 @@ describe('<PrimerTableRow />', () => {
   });
   it('shows skeletons when info missing', () => {
     cy.mount(
-      <PrimerTableRow
-        primerDetails={mockPrimer}
-        pcrDetails={[]}
-      />,
+      <ConfigProvider config={config}>
+        <PrimerTableRow
+          primerDetails={mockPrimer}
+          pcrDetails={[]}
+        />
+      </ConfigProvider>,
     );
     cy.get('.melting-temperature .MuiSkeleton-root').should('exist');
     cy.get('.gc-content .MuiSkeleton-root').should('exist');
@@ -43,12 +54,14 @@ describe('<PrimerTableRow />', () => {
     // but if we mistakenly test for bool and the value is 0, nothing will show.
     // This test is to make sure that we are testing for undefined instead of bool.
     cy.mount(
-      <PrimerTableRow
-        primerDetails={{ ...mockPrimerDetails, melting_temperature: 0, gc_content: 0, length: 0 }}
-        pcrDetails={[
-          { ...mockPCRDetails[0], fwdPrimer: { ...mockPCRDetails[0].fwdPrimer, melting_temperature: 0, gc_content: 0, length: 0 } },
-        ]}
-      />,
+      <ConfigProvider config={config}>
+        <PrimerTableRow
+          primerDetails={{ ...mockPrimerDetails, melting_temperature: 0, gc_content: 0, length: 0 }}
+          pcrDetails={[
+            { ...mockPCRDetails[0], fwdPrimer: { ...mockPCRDetails[0].fwdPrimer, melting_temperature: 0, gc_content: 0, length: 0 } },
+          ]}
+        />
+      </ConfigProvider>,
     );
     cy.get('.melting-temperature').should('contain', '0 (0)');
     cy.get('.gc-content').should('contain', '0 (0)');

package/src/components/primers/PrimerTableRow.jsx

@@ -1,6 +1,6 @@
 import { IconButton, Tooltip } from '@mui/material';
 import React, { useState } from 'react';
-import { Delete as DeleteIcon, Edit as EditIcon, Save as SaveIcon, Clear as ClearIcon } from '@mui/icons-material';
+import { Delete as DeleteIcon, Edit as EditIcon, Clear as ClearIcon } from '@mui/icons-material';
 import SubmitToDatabaseDialog from '../form/SubmitToDatabaseDialog';
 import useDatabase from '../../hooks/useDatabase';
 import PrimerDetailsTds from './primer_details/PrimerDetailsTds';

package/src/components/sources/PCRUnitForm.jsx

@@ -1,7 +1,7 @@
 import { Accordion, AccordionDetails, AccordionSummary, FormControl, InputLabel, ListItemText, MenuItem, Select, Tooltip } from '@mui/material';
 import React from 'react';
 import { useDispatch } from 'react-redux';
-import { AddCircle as AddCircleIcon, ExpandMore as ExpandMoreIcon, Cancel as CancelIcon } from '@mui/icons-material';
+import { ExpandMore as ExpandMoreIcon, Cancel as CancelIcon } from '@mui/icons-material';
 import { cloningActions } from '@opencloning/store/cloning';
 import SingleInputSelector from './SingleInputSelector';
 import SelectPrimerForm from '../primers/SelectPrimerForm';

package/src/components/sources/SourceGenomeRegion.cy.jsx

@@ -1,5 +1,10 @@
 import React from 'react';
 import { AssemblyIdSelector, SpeciesPicker, SequenceAccessionPicker, } from './SourceGenomeRegion';
+import { ConfigProvider } from '../../providers/ConfigProvider';
+
+const config = {
+  backendUrl: 'http://127.0.0.1:8000',
+};
 
 describe('<AssemblyIdSelector />', () => {
   it('can propose a paired accession if the assembly has no annotation', () => {
@@ -43,11 +48,13 @@ describe('<AssemblyIdSelector />', () => {
     }).as('getPairedAssemblyInfo');
 
     cy.mount(
-      <AssemblyIdSelector 
-        setAssemblyId={setAssemblyId}
-        setHasAnnotation={setHasAnnotation}
-        onAssemblyIdChange={onAssemblyIdChange}
-      />
+      <ConfigProvider config={config}>
+        <AssemblyIdSelector 
+          setAssemblyId={setAssemblyId}
+          setHasAnnotation={setHasAnnotation}
+          onAssemblyIdChange={onAssemblyIdChange}
+        />
+      </ConfigProvider>
     );
     cy.get('input').type('GCA_000002945.3');
     cy.wait('@getAssemblyInfo');
@@ -62,7 +69,9 @@ describe('<AssemblyIdSelector />', () => {
     }).as('getAssemblyInfo');
 
     cy.mount(
-      <AssemblyIdSelector setAssemblyId={cy.spy()} setHasAnnotation={cy.spy()} onAssemblyIdChange={cy.spy()} />
+      <ConfigProvider config={config}>
+        <AssemblyIdSelector setAssemblyId={cy.spy()} setHasAnnotation={cy.spy()} onAssemblyIdChange={cy.spy()} />
+      </ConfigProvider>
     );
     cy.get('input').type('GCA_000002945.3', { delay: 0});
     cy.wait('@getAssemblyInfo');
@@ -76,7 +85,9 @@ describe('<SpeciesPicker />', () => {
     const setAssemblyId = cy.spy().as('setAssemblyId');
 
     cy.mount(
-      <SpeciesPicker setSpecies={setSpecies} setAssemblyId={setAssemblyId} />
+      <ConfigProvider config={config}>
+        <SpeciesPicker setSpecies={setSpecies} setAssemblyId={setAssemblyId} />
+      </ConfigProvider>
     );
     cy.intercept('GET', 'https://api.ncbi.nlm.nih.gov/datasets/v2alpha/taxonomy/taxon_suggest/**', {
       statusCode: 500,
@@ -101,7 +112,9 @@ describe('<SequenceAccessionPicker />', () => {
     }).as('getSequenceReports');
 
     cy.mount(
-      <SequenceAccessionPicker assemblyAccession={assemblyAccession} sequenceAccession={''} setSequenceAccession={setSequenceAccession} />
+      <ConfigProvider config={config}>
+        <SequenceAccessionPicker assemblyAccession={assemblyAccession} sequenceAccession={''} setSequenceAccession={setSequenceAccession} />
+      </ConfigProvider>
     );
     cy.contains('Could not load chromosomes').should('exist');
   });
@@ -115,7 +128,9 @@ describe('<SequenceAccessionPicker />', () => {
     }).as('getSequenceReports');
 
     cy.mount(
-      <SequenceAccessionPicker assemblyAccession={assemblyAccession} setSequenceAccession={setSequenceAccession} />
+      <ConfigProvider config={config}>
+        <SequenceAccessionPicker assemblyAccession={assemblyAccession} setSequenceAccession={setSequenceAccession} />
+      </ConfigProvider>
     );
     cy.wait('@getSequenceReports');
     cy.get('label').siblings('div').first().click();

package/src/version.js

@@ -1,2 +1,2 @@
 // Version placeholder - replaced at publish time via prepack script
-export const version = "1.1.0-test.3";
+export const version = "1.1.0";