@openbraininstitute/morphoviewer 0.31.0 → 0.32.0

package/dist/components/morpho-viewer-small-circuit/painter/offscreen-painter/index.d.ts

@@ -1,2 +1,3 @@
 export * from "./offscreen-painter";
+export * from "./segment-offscreen-painter";
 //# sourceMappingURL=index.d.ts.map

package/dist/components/morpho-viewer-small-circuit/painter/offscreen-painter/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../../src/components/morpho-viewer-small-circuit/painter/offscreen-painter/index.ts"],"names":[],"mappings":"AAAA,cAAc,qBAAqB,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../../src/components/morpho-viewer-small-circuit/painter/offscreen-painter/index.ts"],"names":[],"mappings":"AAAA,cAAc,qBAAqB,CAAC;AACpC,cAAc,6BAA6B,CAAC"}

package/dist/components/morpho-viewer-small-circuit/painter/offscreen-painter/index.js

@@ -1,2 +1,3 @@
 export * from "./offscreen-painter";
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+export * from "./segment-offscreen-painter";
+//# sourceMappingURL=data:application/json;base64,eyJ2ZXJzaW9uIjozLCJmaWxlIjoiaW5kZXguanMiLCJzb3VyY2VSb290IjoiIiwic291cmNlcyI6WyIuLi8uLi8uLi8uLi8uLi9zcmMvY29tcG9uZW50cy9tb3JwaG8tdmlld2VyLXNtYWxsLWNpcmN1aXQvcGFpbnRlci9vZmZzY3JlZW4tcGFpbnRlci9pbmRleC50cyJdLCJuYW1lcyI6W10sIm1hcHBpbmdzIjoiQUFBQSxjQUFjLHFCQUFxQixDQUFDO0FBQ3BDLGNBQWMsNkJBQTZCLENBQUMifQ==

package/dist/components/morpho-viewer-small-circuit/painter/offscreen-painter/offscreen-painter.d.ts

@@ -10,6 +10,7 @@ export declare class OffscreenPainter {
     private readonly onscreenContext;
     mix: number;
     readonly context: TgdContext;
+    resolutionDivider: number;
     private readonly offscreenCanvas;
     private readonly offscreenContext;
     private readonly group;
@@ -17,6 +18,7 @@ export declare class OffscreenPainter {
     private isDeleted;
     constructor(onscreenContext: TgdContext, options: OffscreenPainterOptions);
     getItemAt(xScreen: number, yScreen: number): MorphoViewerSmallCircuitCell | undefined;
+    getItemNear(xScreen: number, yScreen: number, radiusInPixels: number): MorphoViewerSmallCircuitCell | undefined;
     private readonly paint;
     delete(): void;
 }

package/dist/components/morpho-viewer-small-circuit/painter/offscreen-painter/offscreen-painter.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"offscreen-painter.d.ts","sourceRoot":"","sources":["../../../../../src/components/morpho-viewer-small-circuit/painter/offscreen-painter/offscreen-painter.ts"],"names":[],"mappings":"AACA,OAAO,EACL,UAAU,EAKX,MAAM,gBAAgB,CAAC;AAMxB,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,mBAAmB,CAAC;AAClD,OAAO,KAAK,EAAE,4BAA4B,EAAE,gCAAgC,EAAE,MAAM,aAAa,CAAC;AAElG,MAAM,WAAW,uBAAuB;IACtC,OAAO,EAAE,4BAA4B,EAAE,CAAC;IACxC,QAAQ,EAAE,CAAC,EAAE,EAAE,MAAM,KAAK,OAAO,CAAC,gCAAgC,GAAG,IAAI,CAAC,CAAC;IAC3E,WAAW,EAAE,QAAQ,CAAC,OAAO,CAAC,gCAAgC,GAAG,IAAI,CAAC,CAAC,CAAC;CACzE;AAID,qBAAa,gBAAgB;IAWzB,OAAO,CAAC,QAAQ,CAAC,eAAe;IAV3B,GAAG,SAAK;IACf,SAAgB,OAAO,EAAE,UAAU,CAAC;IAEpC,OAAO,CAAC,QAAQ,CAAC,eAAe,CAA6B;IAC7D,OAAO,CAAC,QAAQ,CAAC,gBAAgB,CAAa;IAC9C,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAyB;IAC/C,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAiC;IACzD,OAAO,CAAC,SAAS,CAAS;gBAGP,eAAe,EAAE,UAAU,EAC5C,OAAO,EAAE,uBAAuB;IAkClC,SAAS,CAAC,OAAO,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,4BAA4B,GAAG,SAAS;IAUrF,OAAO,CAAC,QAAQ,CAAC,KAAK,CAWpB;IAEF,MAAM;CAKP"}
+{"version":3,"file":"offscreen-painter.d.ts","sourceRoot":"","sources":["../../../../../src/components/morpho-viewer-small-circuit/painter/offscreen-painter/offscreen-painter.ts"],"names":[],"mappings":"AACA,OAAO,EACL,UAAU,EAKX,MAAM,gBAAgB,CAAC;AAOxB,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,mBAAmB,CAAC;AAClD,OAAO,KAAK,EAAE,4BAA4B,EAAE,gCAAgC,EAAE,MAAM,aAAa,CAAC;AAElG,MAAM,WAAW,uBAAuB;IACtC,OAAO,EAAE,4BAA4B,EAAE,CAAC;IACxC,QAAQ,EAAE,CAAC,EAAE,EAAE,MAAM,KAAK,OAAO,CAAC,gCAAgC,GAAG,IAAI,CAAC,CAAC;IAC3E,WAAW,EAAE,QAAQ,CAAC,OAAO,CAAC,gCAAgC,GAAG,IAAI,CAAC,CAAC,CAAC;CACzE;AAUD,qBAAa,gBAAgB;IAoBzB,OAAO,CAAC,QAAQ,CAAC,eAAe;IAnB3B,GAAG,SAAK;IACf,SAAgB,OAAO,EAAE,UAAU,CAAC;IAS7B,iBAAiB,SAA8B;IAEtD,OAAO,CAAC,QAAQ,CAAC,eAAe,CAA6B;IAC7D,OAAO,CAAC,QAAQ,CAAC,gBAAgB,CAAa;IAC9C,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAyB;IAC/C,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAiC;IACzD,OAAO,CAAC,SAAS,CAAS;gBAGP,eAAe,EAAE,UAAU,EAC5C,OAAO,EAAE,uBAAuB;IAkClC,SAAS,CAAC,OAAO,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,4BAA4B,GAAG,SAAS;IAiBrF,WAAW,CACT,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,MAAM,EACf,cAAc,EAAE,MAAM,GACrB,4BAA4B,GAAG,SAAS;IAc3C,OAAO,CAAC,QAAQ,CAAC,KAAK,CASpB;IAEF,MAAM;CAKP"}

package/dist/components/morpho-viewer-small-circuit/painter/offscreen-painter/offscreen-painter.js

@@ -1,11 +1,14 @@
 import { TgdContext, TgdPainterClear, TgdPainterGroup, TgdPainterState, webglPresetDepth, } from "@tolokoban/tgd";
+import { spiralPixelOffsets } from "./../../../../morphology-picking";
 import { vec3ToInt16 } from "./../../../../utils";
 import { PainterCellId } from "../painter-cell";
 const FIRST_INDEX = 1;
+const DEFAULT_RESOLUTION_DIVIDER = 4;
 export class OffscreenPainter {
     constructor(onscreenContext, options) {
         this.onscreenContext = onscreenContext;
         this.mix = 0;
+        this.resolutionDivider = DEFAULT_RESOLUTION_DIVIDER;
         this.offscreenCanvas = new OffscreenCanvas(1, 1);
         this.group = new TgdPainterGroup();
         this.isDeleted = false;
@@ -15,10 +18,8 @@ export class OffscreenPainter {
             const { onscreenContext, offscreenContext, offscreenCanvas } = this;
             offscreenContext.camera = onscreenContext.camera;
             const { canvas } = onscreenContext;
-            const w = Math.ceil(canvas.width / 4);
-            const h = Math.ceil(canvas.height / 4);
-            offscreenCanvas.width = w;
-            offscreenCanvas.height = h;
+            offscreenCanvas.width = Math.ceil(canvas.width / this.resolutionDivider);
+            offscreenCanvas.height = Math.ceil(canvas.height / this.resolutionDivider);
             offscreenContext.paint();
         };
         this.circuit = options.circuit;
@@ -59,10 +60,23 @@ export class OffscreenPainter {
         const index = vec3ToInt16([R * divider, G * divider, B * divider]) - FIRST_INDEX;
         return (_a = circuit[index]) !== null && _a !== void 0 ? _a : undefined;
     }
+    getItemNear(xScreen, yScreen, radiusInPixels) {
+        if (this.isDeleted)
+            return;
+        const { offscreenCanvas } = this;
+        const stepX = 2 / Math.max(1, offscreenCanvas.width);
+        const stepY = 2 / Math.max(1, offscreenCanvas.height);
+        for (const [dx, dy] of spiralPixelOffsets(radiusInPixels)) {
+            const found = this.getItemAt(xScreen + dx * stepX, yScreen + dy * stepY);
+            if (found)
+                return found;
+        }
+        return undefined;
+    }
     delete() {
         this.onscreenContext.eventPaint.removeListener(this.paint);
         this.offscreenContext.delete();
         this.isDeleted = true;
     }
 }
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package/dist/components/morpho-viewer-small-circuit/painter/offscreen-painter/segment-offscreen-painter.d.ts

@@ -0,0 +1,24 @@
+import { TgdContext } from "@tolokoban/tgd";
+import type { MorphoViewerSmallCircuitCell, MorphoViewerSmallCircuitCellData } from "../../types";
+import type { CellSectionIndex, CellSegment } from "../painter-cell/factory/section-index";
+export interface SegmentOffscreenPainterOptions {
+    circuit: MorphoViewerSmallCircuitCell[];
+    loadCell: (id: string) => Promise<MorphoViewerSmallCircuitCellData | null>;
+    onCellLoaded?: () => void;
+}
+export declare class SegmentOffscreenPainter {
+    private readonly onscreenContext;
+    readonly context: TgdContext;
+    private readonly offscreenCanvas;
+    private readonly offscreenContext;
+    private readonly group;
+    private readonly cellPainters;
+    private isDeleted;
+    constructor(onscreenContext: TgdContext, options: SegmentOffscreenPainterOptions);
+    getSections(cell: MorphoViewerSmallCircuitCell): CellSectionIndex | null;
+    getSegmentNear(cell: MorphoViewerSmallCircuitCell, xScreen: number, yScreen: number, radiusInPixels: number): CellSegment | undefined;
+    private getSegmentAt;
+    private readonly paint;
+    delete(): void;
+}
+//# sourceMappingURL=segment-offscreen-painter.d.ts.map

package/dist/components/morpho-viewer-small-circuit/painter/offscreen-painter/segment-offscreen-painter.d.ts.map

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package/dist/components/morpho-viewer-small-circuit/painter/offscreen-painter/segment-offscreen-painter.js

@@ -0,0 +1,86 @@
+import { TgdContext, TgdPainterClear, TgdPainterGroup, TgdPainterState, webglPresetDepth, } from "@tolokoban/tgd";
+import { decodeSegmentIndex, spiralPixelOffsets } from "./../../../../morphology-picking";
+import { PainterCell } from "../painter-cell";
+const RESOLUTION_DIVIDER = 2;
+export class SegmentOffscreenPainter {
+    constructor(onscreenContext, options) {
+        this.onscreenContext = onscreenContext;
+        this.offscreenCanvas = new OffscreenCanvas(1, 1);
+        this.group = new TgdPainterGroup();
+        this.cellPainters = new Map();
+        this.isDeleted = false;
+        this.paint = () => {
+            if (this.isDeleted)
+                return;
+            const { onscreenContext, offscreenContext, offscreenCanvas } = this;
+            offscreenContext.camera = onscreenContext.camera;
+            const { canvas } = onscreenContext;
+            offscreenCanvas.width = Math.ceil(canvas.width / RESOLUTION_DIVIDER);
+            offscreenCanvas.height = Math.ceil(canvas.height / RESOLUTION_DIVIDER);
+            offscreenContext.paint();
+        };
+        onscreenContext.eventPaint.addListener(this.paint);
+        const context = new TgdContext(this.offscreenCanvas, {
+            preserveDrawingBuffer: true,
+            antialias: false,
+            alpha: false,
+            depth: true,
+            name: "SegmentOffscreenPainter",
+        });
+        this.context = context;
+        context.camera = onscreenContext.camera;
+        this.offscreenContext = context;
+        context.add(new TgdPainterClear(context, { color: [0, 0, 0, 0], depth: 1 }), new TgdPainterState(context, {
+            depth: webglPresetDepth.less,
+            children: [this.group],
+        }));
+        for (const cell of options.circuit) {
+            const painter = new PainterCell(context, {
+                cell,
+                loadCell: options.loadCell,
+                matrerial: "segment",
+                onCellLoaded: () => { var _a; return (_a = options.onCellLoaded) === null || _a === void 0 ? void 0 : _a.call(options); },
+            });
+            this.cellPainters.set(cell.id, painter);
+            this.group.add(painter);
+        }
+        this.paint();
+    }
+    getSections(cell) {
+        var _a, _b;
+        return (_b = (_a = this.cellPainters.get(cell.id)) === null || _a === void 0 ? void 0 : _a.sections) !== null && _b !== void 0 ? _b : null;
+    }
+    getSegmentNear(cell, xScreen, yScreen, radiusInPixels) {
+        if (this.isDeleted)
+            return;
+        const { offscreenCanvas } = this;
+        const stepX = 2 / Math.max(1, offscreenCanvas.width);
+        const stepY = 2 / Math.max(1, offscreenCanvas.height);
+        for (const [dx, dy] of spiralPixelOffsets(radiusInPixels)) {
+            const found = this.getSegmentAt(cell, xScreen + dx * stepX, yScreen + dy * stepY);
+            if (found)
+                return found;
+        }
+        return undefined;
+    }
+    getSegmentAt(cell, xScreen, yScreen) {
+        const sections = this.getSections(cell);
+        if (!sections)
+            return;
+        const [R, G, B] = this.offscreenContext.readPixel(xScreen, yScreen);
+        const value = (R + G * 256 + B * 256 * 256) / 0xffffff;
+        const index = decodeSegmentIndex(value, sections.length);
+        if (index < 0)
+            return;
+        return sections.get(index);
+    }
+    delete() {
+        this.onscreenContext.eventPaint.removeListener(this.paint);
+        for (const painter of this.cellPainters.values())
+            painter.delete();
+        this.offscreenContext.delete();
+        this.cellPainters.clear();
+        this.isDeleted = true;
+    }
+}
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package/dist/components/morpho-viewer-small-circuit/painter/painter-cell/factory/section-index.d.ts

@@ -0,0 +1,19 @@
+import type { ArrayNumber3 } from "@tolokoban/tgd";
+import type { MorphoViewerTreeItem, MorphoViewerTreeItemType } from "../../../../morpho-viewer-simul";
+import type { PickableSegment, SectionSegmentIndex } from "../../../../../morphology-picking";
+export interface CellSegment extends PickableSegment {
+    index: number;
+    sonataSectionId?: number;
+    sectionType: MorphoViewerTreeItemType;
+}
+export declare class CellSectionIndex implements SectionSegmentIndex {
+    private readonly segments;
+    private readonly bySection;
+    add(item: MorphoViewerTreeItem, start: ArrayNumber3, end: ArrayNumber3): CellSegment;
+    get length(): number;
+    get(index: number): CellSegment | undefined;
+    getSegmentsOfSection(sectionName: string): CellSegment[];
+    getSectionType(sectionName: string): MorphoViewerTreeItemType | undefined;
+    getPointAtOffset(sectionName: string, offset: number): ArrayNumber3 | null;
+}
+//# sourceMappingURL=section-index.d.ts.map

package/dist/components/morpho-viewer-small-circuit/painter/painter-cell/factory/section-index.d.ts.map

@@ -0,0 +1 @@
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package/dist/components/morpho-viewer-small-circuit/painter/painter-cell/factory/section-index.js

@@ -0,0 +1,69 @@
+export class CellSectionIndex {
+    constructor() {
+        this.segments = [];
+        this.bySection = new Map();
+    }
+    add(item, start, end) {
+        var _a;
+        const sectionName = item.sectionId;
+        const siblings = (_a = this.bySection.get(sectionName)) !== null && _a !== void 0 ? _a : [];
+        const parsed = Number.parseInt(item.segmentId, 10);
+        const segment = {
+            index: this.segments.length,
+            sectionName,
+            segmentIndex: Number.isNaN(parsed) ? siblings.length : parsed,
+            segmentLength: distance(start, end),
+            start,
+            end,
+            sonataSectionId: item.sonataSectionId,
+            sectionType: item.type,
+        };
+        this.segments.push(segment);
+        siblings.push(segment);
+        this.bySection.set(sectionName, siblings);
+        return segment;
+    }
+    get length() {
+        return this.segments.length;
+    }
+    get(index) {
+        return this.segments[index];
+    }
+    getSegmentsOfSection(sectionName) {
+        var _a;
+        return (_a = this.bySection.get(sectionName)) !== null && _a !== void 0 ? _a : [];
+    }
+    getSectionType(sectionName) {
+        var _a, _b;
+        return (_b = (_a = this.bySection.get(sectionName)) === null || _a === void 0 ? void 0 : _a[0]) === null || _b === void 0 ? void 0 : _b.sectionType;
+    }
+    getPointAtOffset(sectionName, offset) {
+        const segments = this.getSegmentsOfSection(sectionName);
+        if (segments.length === 0)
+            return null;
+        const total = segments.reduce((sum, segment) => sum + segment.segmentLength, 0);
+        if (total <= 0)
+            return segments[0].start;
+        const target = Math.min(Math.max(offset, 0), 1) * total;
+        let walked = 0;
+        for (const segment of segments) {
+            if (walked + segment.segmentLength >= target) {
+                const within = segment.segmentLength > 0 ? (target - walked) / segment.segmentLength : 0;
+                return lerp(segment.start, segment.end, within);
+            }
+            walked += segment.segmentLength;
+        }
+        return segments[segments.length - 1].end;
+    }
+}
+function lerp(from, to, alpha) {
+    return [
+        from[0] + (to[0] - from[0]) * alpha,
+        from[1] + (to[1] - from[1]) * alpha,
+        from[2] + (to[2] - from[2]) * alpha,
+    ];
+}
+function distance([x1, y1, z1], [x2, y2, z2]) {
+    return Math.sqrt(Math.pow((x1 - x2), 2) + Math.pow((y1 - y2), 2) + Math.pow((z1 - z2), 2));
+}
+//# sourceMappingURL=data:application/json;base64,eyJ2ZXJzaW9uIjozLCJmaWxlIjoic2VjdGlvbi1pbmRleC5qcyIsInNvdXJjZVJvb3QiOiIiLCJzb3VyY2VzIjpbIi4uLy4uLy4uLy4uLy4uLy4uL3NyYy9jb21wb25lbnRzL21vcnBoby12aWV3ZXItc21hbGwtY2lyY3VpdC9wYWludGVyL3BhaW50ZXItY2VsbC9mYWN0b3J5L3NlY3Rpb24taW5kZXgudHMiXSwibmFtZXMiOltdLCJtYXBwaW5ncyI6IkFBd0JBLE1BQU0sT0FBTyxnQkFBZ0I7SUFBN0I7UUFDbUIsYUFBUSxHQUFrQixFQUFFLENBQUM7UUFDN0IsY0FBUyxHQUFHLElBQUksR0FBRyxFQUF5QixDQUFDO0lBNEVoRSxDQUFDO0lBcEVDLEdBQUcsQ0FBQyxJQUEwQixFQUFFLEtBQW1CLEVBQUUsR0FBaUI7O1FBQ3BFLE1BQU0sV0FBVyxHQUFHLElBQUksQ0FBQyxTQUFTLENBQUM7UUFDbkMsTUFBTSxRQUFRLEdBQUcsTUFBQSxJQUFJLENBQUMsU0FBUyxDQUFDLEdBQUcsQ0FBQyxXQUFXLENBQUMsbUNBQUksRUFBRSxDQUFDO1FBQ3ZELE1BQU0sTUFBTSxHQUFHLE1BQU0sQ0FBQyxRQUFRLENBQUMsSUFBSSxDQUFDLFNBQVMsRUFBRSxFQUFFLENBQUMsQ0FBQztRQUNuRCxNQUFNLE9BQU8sR0FBZ0I7WUFDM0IsS0FBSyxFQUFFLElBQUksQ0FBQyxRQUFRLENBQUMsTUFBTTtZQUMzQixXQUFXO1lBR1gsWUFBWSxFQUFFLE1BQU0sQ0FBQyxLQUFLLENBQUMsTUFBTSxDQUFDLENBQUMsQ0FBQyxDQUFDLFFBQVEsQ0FBQyxNQUFNLENBQUMsQ0FBQyxDQUFDLE1BQU07WUFDN0QsYUFBYSxFQUFFLFFBQVEsQ0FBQyxLQUFLLEVBQUUsR0FBRyxDQUFDO1lBQ25DLEtBQUs7WUFDTCxHQUFHO1lBQ0gsZUFBZSxFQUFFLElBQUksQ0FBQyxlQUFlO1lBQ3JDLFdBQVcsRUFBRSxJQUFJLENBQUMsSUFBSTtTQUN2QixDQUFDO1FBQ0YsSUFBSSxDQUFDLFFBQVEsQ0FBQyxJQUFJLENBQUMsT0FBTyxDQUFDLENBQUM7UUFDNUIsUUFBUSxDQUFDLElBQUksQ0FBQyxPQUFPLENBQUMsQ0FBQztRQUN2QixJQUFJLENBQUMsU0FBUyxDQUFDLEdBQUcsQ0FBQyxXQUFXLEVBQUUsUUFBUSxDQUFDLENBQUM7UUFDMUMsT0FBTyxPQUFPLENBQUM7SUFDakIsQ0FBQztJQUdELElBQUksTUFBTTtRQUNSLE9BQU8sSUFBSSxDQUFDLFFBQVEsQ0FBQyxNQUFNLENBQUM7SUFDOUIsQ0FBQztJQUdELEdBQUcsQ0FBQyxLQUFhO1FBQ2YsT0FBTyxJQUFJLENBQUMsUUFBUSxDQUFDLEtBQUssQ0FBQyxDQUFDO0lBQzlCLENBQUM7SUFFRCxvQkFBb0IsQ0FBQyxXQUFtQjs7UUFDdEMsT0FBTyxNQUFBLElBQUksQ0FBQyxTQUFTLENBQUMsR0FBRyxDQUFDLFdBQVcsQ0FBQyxtQ0FBSSxFQUFFLENBQUM7SUFDL0MsQ0FBQztJQU9ELGNBQWMsQ0FBQyxXQUFtQjs7UUFDaEMsT0FBTyxNQUFBLE1BQUEsSUFBSSxDQUFDLFNBQVMsQ0FBQyxHQUFHLENBQUMsV0FBVyxDQUFDLDBDQUFHLENBQUMsQ0FBQywwQ0FBRSxXQUFXLENBQUM7SUFDM0QsQ0FBQztJQU9ELGdCQUFnQixDQUFDLFdBQW1CLEVBQUUsTUFBYztRQUNsRCxNQUFNLFFBQVEsR0FBRyxJQUFJLENBQUMsb0JBQW9CLENBQUMsV0FBVyxDQUFDLENBQUM7UUFDeEQsSUFBSSxRQUFRLENBQUMsTUFBTSxLQUFLLENBQUM7WUFBRSxPQUFPLElBQUksQ0FBQztRQUV2QyxNQUFNLEtBQUssR0FBRyxRQUFRLENBQUMsTUFBTSxDQUFDLENBQUMsR0FBRyxFQUFFLE9BQU8sRUFBRSxFQUFFLENBQUMsR0FBRyxHQUFHLE9BQU8sQ0FBQyxhQUFhLEVBQUUsQ0FBQyxDQUFDLENBQUM7UUFDaEYsSUFBSSxLQUFLLElBQUksQ0FBQztZQUFFLE9BQU8sUUFBUSxDQUFDLENBQUMsQ0FBQyxDQUFDLEtBQUssQ0FBQztRQUV6QyxNQUFNLE1BQU0sR0FBRyxJQUFJLENBQUMsR0FBRyxDQUFDLElBQUksQ0FBQyxHQUFHLENBQUMsTUFBTSxFQUFFLENBQUMsQ0FBQyxFQUFFLENBQUMsQ0FBQyxHQUFHLEtBQUssQ0FBQztRQUN4RCxJQUFJLE1BQU0sR0FBRyxDQUFDLENBQUM7UUFDZixLQUFLLE1BQU0sT0FBTyxJQUFJLFFBQVEsRUFBRSxDQUFDO1lBQy9CLElBQUksTUFBTSxHQUFHLE9BQU8sQ0FBQyxhQUFhLElBQUksTUFBTSxFQUFFLENBQUM7Z0JBQzdDLE1BQU0sTUFBTSxHQUFHLE9BQU8sQ0FBQyxhQUFhLEdBQUcsQ0FBQyxDQUFDLENBQUMsQ0FBQyxDQUFDLE1BQU0sR0FBRyxNQUFNLENBQUMsR0FBRyxPQUFPLENBQUMsYUFBYSxDQUFDLENBQUMsQ0FBQyxDQUFDLENBQUM7Z0JBQ3pGLE9BQU8sSUFBSSxDQUFDLE9BQU8sQ0FBQyxLQUFLLEVBQUUsT0FBTyxDQUFDLEdBQUcsRUFBRSxNQUFNLENBQUMsQ0FBQztZQUNsRCxDQUFDO1lBQ0QsTUFBTSxJQUFJLE9BQU8sQ0FBQyxhQUFhLENBQUM7UUFDbEMsQ0FBQztRQUNELE9BQU8sUUFBUSxDQUFDLFFBQVEsQ0FBQyxNQUFNLEdBQUcsQ0FBQyxDQUFDLENBQUMsR0FBRyxDQUFDO0lBQzNDLENBQUM7Q0FDRjtBQUVELFNBQVMsSUFBSSxDQUFDLElBQWtCLEVBQUUsRUFBZ0IsRUFBRSxLQUFhO0lBQy9ELE9BQU87UUFDTCxJQUFJLENBQUMsQ0FBQyxDQUFDLEdBQUcsQ0FBQyxFQUFFLENBQUMsQ0FBQyxDQUFDLEdBQUcsSUFBSSxDQUFDLENBQUMsQ0FBQyxDQUFDLEdBQUcsS0FBSztRQUNuQyxJQUFJLENBQUMsQ0FBQyxDQUFDLEdBQUcsQ0FBQyxFQUFFLENBQUMsQ0FBQyxDQUFDLEdBQUcsSUFBSSxDQUFDLENBQUMsQ0FBQyxDQUFDLEdBQUcsS0FBSztRQUNuQyxJQUFJLENBQUMsQ0FBQyxDQUFDLEdBQUcsQ0FBQyxFQUFFLENBQUMsQ0FBQyxDQUFDLEdBQUcsSUFBSSxDQUFDLENBQUMsQ0FBQyxDQUFDLEdBQUcsS0FBSztLQUNwQyxDQUFDO0FBQ0osQ0FBQztBQUVELFNBQVMsUUFBUSxDQUFDLENBQUMsRUFBRSxFQUFFLEVBQUUsRUFBRSxFQUFFLENBQWUsRUFBRSxDQUFDLEVBQUUsRUFBRSxFQUFFLEVBQUUsRUFBRSxDQUFlO0lBQ3RFLE9BQU8sSUFBSSxDQUFDLElBQUksQ0FBQyxTQUFBLENBQUMsRUFBRSxHQUFHLEVBQUUsQ0FBQyxFQUFJLENBQUMsQ0FBQSxHQUFHLFNBQUEsQ0FBQyxFQUFFLEdBQUcsRUFBRSxDQUFDLEVBQUksQ0FBQyxDQUFBLEdBQUcsU0FBQSxDQUFDLEVBQUUsR0FBRyxFQUFFLENBQUMsRUFBSSxDQUFDLENBQUEsQ0FBQyxDQUFDO0FBQ3JFLENBQUMifQ==

package/dist/components/morpho-viewer-small-circuit/painter/painter-cell/factory/tree.d.ts

@@ -1,7 +1,9 @@
 import { TgdBoundingBox, type TgdContext, type TgdMaterial, TgdPainterNode } from "@tolokoban/tgd";
 import { type MorphoViewerTree } from "../../../../morpho-viewer-simul";
+import { CellSectionIndex } from "./section-index";
 export declare function createCellFromTree(context: TgdContext, material: TgdMaterial, tree: MorphoViewerTree, forSelection: boolean): {
     bbox: TgdBoundingBox;
     node: TgdPainterNode;
+    sections: CellSectionIndex;
 };
 //# sourceMappingURL=tree.d.ts.map

package/dist/components/morpho-viewer-small-circuit/painter/painter-cell/factory/tree.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"tree.d.ts","sourceRoot":"","sources":["../../../../../../src/components/morpho-viewer-small-circuit/painter/painter-cell/factory/tree.ts"],"names":[],"mappings":"AAAA,OAAO,EAEL,cAAc,EACd,KAAK,UAAU,EACf,KAAK,WAAW,EAChB,cAAc,EAGf,MAAM,gBAAgB,CAAC;AAExB,OAAO,EACL,KAAK,gBAAgB,EAGtB,MAAM,kCAAkC,CAAC;AAE1C,wBAAgB,kBAAkB,CAChC,OAAO,EAAE,UAAU,EACnB,QAAQ,EAAE,WAAW,EACrB,IAAI,EAAE,gBAAgB,EACtB,YAAY,EAAE,OAAO,GACpB;IAAE,IAAI,EAAE,cAAc,CAAC;IAAC,IAAI,EAAE,cAAc,CAAA;CAAE,CAoChD"}
+{"version":3,"file":"tree.d.ts","sourceRoot":"","sources":["../../../../../../src/components/morpho-viewer-small-circuit/painter/painter-cell/factory/tree.ts"],"names":[],"mappings":"AAAA,OAAO,EAIL,cAAc,EACd,KAAK,UAAU,EACf,KAAK,WAAW,EAChB,cAAc,EAGf,MAAM,gBAAgB,CAAC;AAExB,OAAO,EACL,KAAK,gBAAgB,EAGtB,MAAM,kCAAkC,CAAC;AAG1C,OAAO,EAAE,gBAAgB,EAAE,MAAM,iBAAiB,CAAC;AAenD,wBAAgB,kBAAkB,CAChC,OAAO,EAAE,UAAU,EACnB,QAAQ,EAAE,WAAW,EACrB,IAAI,EAAE,gBAAgB,EACtB,YAAY,EAAE,OAAO,GACpB;IAAE,IAAI,EAAE,cAAc,CAAC;IAAC,IAAI,EAAE,cAAc,CAAC;IAAC,QAAQ,EAAE,gBAAgB,CAAA;CAAE,CAgF5E"}

package/dist/components/morpho-viewer-small-circuit/painter/painter-cell/factory/tree.js

@@ -1,10 +1,34 @@
 import { TgdBoundingBox, TgdPainterNode, TgdPainterSegments, TgdPainterSegmentsData, } from "@tolokoban/tgd";
 import { MorphoViewerTreeItemType, } from "./../../../../morpho-viewer-simul";
+import { encodeSegmentIndex } from "./../../../../../morphology-picking";
+import { CellSectionIndex } from "./section-index";
 export function createCellFromTree(context, material, tree, forSelection) {
+    var _a;
+    const pending = [];
+    for (const item of tree.roots) {
+        collectSegments(undefined, item, pending);
+    }
+    const sections = new CellSectionIndex();
     const segmentsSoma = new TgdPainterSegmentsData();
     const segmentsNeurites = new TgdPainterSegmentsData();
-    for (const item of tree.roots) {
-        fillSegments(undefined, item, segmentsSoma, segmentsNeurites);
+    const somaSphere = fitSomaSphere(pending);
+    let somaDrawn = false;
+    for (const segment of pending) {
+        const recorded = sections.add(segment.item, segment.start, segment.end);
+        const uv0 = makeUV(segment.parentType, recorded.index, pending.length);
+        const uv1 = makeUV(segment.item.type, recorded.index, pending.length);
+        const target = segment.isSoma ? segmentsSoma : segmentsNeurites;
+        if (segment.isSoma) {
+            const radius = somaDrawn ? 0 : somaSphere.radius;
+            somaDrawn = true;
+            target.add([...somaSphere.center, radius], [...somaSphere.center, radius], uv1, uv1);
+            continue;
+        }
+        const stubOffSoma = ((_a = segment.parent) === null || _a === void 0 ? void 0 : _a.type) === MorphoViewerTreeItemType.Soma;
+        target.add([
+            ...(stubOffSoma ? somaSphere.center : segment.start),
+            stubOffSoma ? Math.min(segment.radiusStart, segment.radiusEnd) : segment.radiusStart,
+        ], [...segment.end, segment.radiusEnd], stubOffSoma ? uv1 : uv0, uv1);
     }
     const bbox = new TgdBoundingBox();
     for (const segments of [segmentsSoma, segmentsNeurites]) {
@@ -32,32 +56,55 @@ export function createCellFromTree(context, material, tree, forSelection) {
     painterNeurites.name = "painterNeurites";
     return {
         bbox,
+        sections,
         node: new TgdPainterNode({
             children: [painterSoma, painterNeurites],
         }),
     };
 }
-function fillSegments(parent, item, segmentsSoma, segmentsNeurites) {
-    var _a, _b;
-    const u1 = computeCoordU(item.type);
-    const v1 = 0;
-    const uv1 = [u1, v1];
-    const u0 = computeCoordU((_a = parent === null || parent === void 0 ? void 0 : parent.type) !== null && _a !== void 0 ? _a : u1);
-    const v0 = v1;
-    const uv0 = [u0, v0];
-    if (!parent) {
-        segmentsSoma.add([item.x, item.y, item.z, item.radius], [item.x, item.y, item.z, item.radius], uv1, uv1);
+function fitSomaSphere(pending) {
+    const points = [];
+    for (const segment of pending) {
+        if (segment.isSoma)
+            points.push({ p: segment.end, r: segment.radiusEnd });
     }
-    else if (item.type === MorphoViewerTreeItemType.Soma) {
-        segmentsSoma.add([parent.x, parent.y, parent.z, parent.radius], [item.x, item.y, item.z, item.radius], uv0, uv1);
+    if (!points.length)
+        return { center: [0, 0, 0], radius: 0 };
+    const center = [0, 0, 0];
+    for (const { p } of points) {
+        center[0] += p[0] / points.length;
+        center[1] += p[1] / points.length;
+        center[2] += p[2] / points.length;
     }
-    else {
-        segmentsNeurites.add([parent.x, parent.y, parent.z, parent.radius], [item.x, item.y, item.z, item.radius], uv0, uv1);
+    let meanDistance = 0;
+    let maxRadius = 0;
+    for (const { p, r } of points) {
+        meanDistance +=
+            Math.hypot(p[0] - center[0], p[1] - center[1], p[2] - center[2]) / points.length;
+        maxRadius = Math.max(maxRadius, r);
     }
+    return { center, radius: Math.max(meanDistance, maxRadius) };
+}
+function collectSegments(parent, item, pending) {
+    var _a, _b;
+    const from = parent !== null && parent !== void 0 ? parent : item;
+    pending.push({
+        item,
+        parent,
+        parentType: (_a = parent === null || parent === void 0 ? void 0 : parent.type) !== null && _a !== void 0 ? _a : item.type,
+        start: [from.x, from.y, from.z],
+        end: [item.x, item.y, item.z],
+        radiusStart: from.radius,
+        radiusEnd: item.radius,
+        isSoma: !parent || item.type === MorphoViewerTreeItemType.Soma,
+    });
     for (const child of (_b = item.children) !== null && _b !== void 0 ? _b : []) {
-        fillSegments(item, child, segmentsSoma, segmentsNeurites);
+        collectSegments(item, child, pending);
     }
 }
+function makeUV(type, segmentIndex, segmentCount) {
+    return [computeCoordU(type), encodeSegmentIndex(segmentIndex, segmentCount)];
+}
 function computeCoordU(type) {
     const types = [
         MorphoViewerTreeItemType.Soma,
@@ -69,4 +116,4 @@ function computeCoordU(type) {
     ];
     return (types.indexOf(type) + 0.5) / types.length;
 }
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package/dist/components/morpho-viewer-small-circuit/painter/painter-cell/painter-cell.d.ts

@@ -1,5 +1,6 @@
 import { TgdBoundingBox, type TgdContext, TgdPainterGroup } from "@tolokoban/tgd";
 import type { MorphoViewerSmallCircuitCell, MorphoViewerSmallCircuitCellData } from "../../types";
+import type { CellSectionIndex } from "./factory/section-index";
 export interface PainterCellOptions {
     name?: string;
     matrerial?: PainterCellMaterialName;
@@ -8,7 +9,7 @@ export interface PainterCellOptions {
     onCellLoaded?(bbox: TgdBoundingBox | null): void;
     opacity?: number;
 }
-export type PainterCellMaterialName = "full" | "flat" | number;
+export type PainterCellMaterialName = "full" | "flat" | "segment" | number;
 export declare class PainterCell extends TgdPainterGroup {
     readonly context: TgdContext;
     protected readonly options: PainterCellOptions;
@@ -19,8 +20,10 @@ export declare class PainterCell extends TgdPainterGroup {
     private readonly textureBlack;
     private _isDeleted;
     private _bbox;
+    private _sections;
     constructor(context: TgdContext, options: PainterCellOptions);
     get bbox(): Readonly<TgdBoundingBox>;
+    get sections(): CellSectionIndex | null;
     get isDeleted(): boolean;
     private set isDeleted(value);
     get black(): boolean;

package/dist/components/morpho-viewer-small-circuit/painter/painter-cell/painter-cell.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"painter-cell.d.ts","sourceRoot":"","sources":["../../../../../src/components/morpho-viewer-small-circuit/painter/painter-cell/painter-cell.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,cAAc,EAEd,KAAK,UAAU,EAQf,eAAe,EAOhB,MAAM,gBAAgB,CAAC;AASxB,OAAO,KAAK,EACV,4BAA4B,EAC5B,gCAAgC,EAEjC,MAAM,aAAa,CAAC;AACrB,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAC;AAEhE,MAAM,WAAW,kBAAkB;IACjC,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,SAAS,CAAC,EAAE,uBAAuB,CAAC;IACpC,IAAI,EAAE,4BAA4B,CAAC;IACnC,QAAQ,CAAC,EAAE,EAAE,MAAM,GAAG,OAAO,CAAC,gCAAgC,GAAG,IAAI,CAAC,CAAC;IAKvE,YAAY,CAAC,CAAC,IAAI,EAAE,cAAc,GAAG,IAAI,GAAG,IAAI,CAAC;IAEjD,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAMD,MAAM,MAAM,uBAAuB,GAAG,MAAM,GAAG,MAAM,GAAG,SAAS,GAAG,MAAM,CAAC;AAO3E,qBAAa,WAAY,SAAQ,eAAe;aAY5B,OAAO,EAAE,UAAU;IACnC,SAAS,CAAC,QAAQ,CAAC,OAAO,EAAE,kBAAkB;IAZhD,OAAO,CAAC,MAAM,CAAC,EAAE,CAAK;IAEtB,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAc;IACvC,OAAO,CAAC,MAAM,CAAS;IACvB,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAe;IAC9C,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAe;IAC5C,OAAO,CAAC,UAAU,CAAS;IAC3B,OAAO,CAAC,KAAK,CAAwB;IACrC,OAAO,CAAC,SAAS,CAAiC;gBAGhC,OAAO,EAAE,UAAU,EAChB,OAAO,EAAE,kBAAkB;IAuDhD,IAAI,IAAI,IAAI,QAAQ,CAAC,cAAc,CAAC,CAEnC;IAQD,IAAI,QAAQ,IAAI,gBAAgB,GAAG,IAAI,CAEtC;IAED,IAAI,SAAS,IAAI,OAAO,CAEvB;IACD,OAAO,KAAK,SAAS,QAIpB;IAGD,IAAI,KAAK,IAGQ,OAAO,CADvB;IACD,IAAI,KAAK,CAAC,KAAK,EAAE,OAAO,EAQvB;IAED,IAAI,OAAO,IAAI,MAAM,CAMpB;IACD,IAAI,OAAO,CAAC,OAAO,EAAE,MAAM,EAK1B;IAED,KAAK,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,IAAI;YAM1B,QAAQ;IAgDtB,MAAM,IAAI,IAAI;CAKf"}