@open-agent-toolkit/cli 0.2.56 → 0.2.58

package/assets/skills/oat-project-implement/scripts/capture-dirty-tree.mjs

@@ -0,0 +1,1069 @@
+#!/usr/bin/env node
+/**
+ * Fail-closed capture of a lost child's uncommitted work.
+ *
+ * The root lifecycle runs this before it restores a phase worktree to its clean
+ * base, so that a fresh same-target continuation can apply, review, and commit
+ * the recovered work as its first action. Every failure mode is a hard stop
+ * with a named reason; nothing here performs a best-effort restore, and the
+ * script never writes to the worktree it captures.
+ */
+import { execFile as execFileCallback } from 'node:child_process';
+import { createHash } from 'node:crypto';
+import { realpathSync } from 'node:fs';
+import {
+  chmod,
+  copyFile,
+  lstat,
+  mkdir,
+  mkdtemp,
+  readdir,
+  readFile,
+  realpath,
+  rm,
+  stat,
+  writeFile,
+} from 'node:fs/promises';
+import { tmpdir } from 'node:os';
+import { dirname, join, relative, resolve, sep } from 'node:path';
+import { setTimeout as delay } from 'node:timers/promises';
+import { fileURLToPath } from 'node:url';
+import { promisify } from 'node:util';
+
+const execFile = promisify(execFileCallback);
+
+const NUL = '\u0000';
+const MAX_GIT_BUFFER = 256 * 1024 * 1024;
+const DEFAULT_QUIESCE_INTERVAL_MS = 750;
+const MIN_QUIESCE_INTERVAL_MS = 25;
+const PROOF_FILE = 'round-trip.proof';
+const MANIFEST_FILE = 'manifest.json';
+
+/** Named stop reasons. Callers report these verbatim; none is recoverable. */
+export const CAPTURE_REASONS = Object.freeze({
+  activeWriter: 'active-writer',
+  unsupportedDirt: 'unsupported-dirt',
+  roundTripFailed: 'round-trip-failed',
+  artifactVerificationFailed: 'artifact-verification-failed',
+  invalidUsage: 'invalid-usage',
+});
+
+export const EXIT_CODES = Object.freeze({
+  'active-writer': 2,
+  'unsupported-dirt': 3,
+  'round-trip-failed': 4,
+  'artifact-verification-failed': 5,
+  'invalid-usage': 64,
+});
+
+const RENAME_DETECTION_CONFIG = Object.freeze([
+  'status.renames=true',
+  'diff.renames=true',
+]);
+
+const IN_PROGRESS_MARKERS = Object.freeze([
+  'MERGE_HEAD',
+  'CHERRY_PICK_HEAD',
+  'REVERT_HEAD',
+  'rebase-merge',
+  'rebase-apply',
+]);
+
+function captureError(reason, message, details = {}) {
+  const error = new Error(message);
+  error.code = 'E_CAPTURE_DIRTY_TREE';
+  error.reason = reason;
+  Object.assign(error, details);
+  return error;
+}
+
+async function git(
+  cwd,
+  args,
+  { binary = false, literalPathspecs = false, config = [] } = {},
+) {
+  // `--literal-pathspecs` exports GIT_LITERAL_PATHSPECS=1 to anything Git
+  // spawns, including repository hooks, so it is scoped to the one call that
+  // feeds status-derived filenames back to Git as a pathspec.
+  const { stdout } = await execFile(
+    'git',
+    [
+      '--no-optional-locks',
+      ...(literalPathspecs ? ['--literal-pathspecs'] : []),
+      ...config.flatMap((setting) => ['-c', setting]),
+      ...args,
+    ],
+    {
+      cwd,
+      encoding: binary ? 'buffer' : 'utf8',
+      maxBuffer: MAX_GIT_BUFFER,
+    },
+  );
+  return stdout;
+}
+
+async function pathExists(path) {
+  try {
+    await stat(path);
+    return true;
+  } catch {
+    return false;
+  }
+}
+
+function sha256(bytes) {
+  return createHash('sha256').update(bytes).digest('hex');
+}
+
+/**
+ * Parse `git status --porcelain=v2 -z`. A `2` (rename/copy) record is followed
+ * by a second NUL-terminated field holding the original path, so the reader
+ * consumes that extra token rather than treating it as its own record. A path
+ * Git emits in bytes that are not valid UTF-8 cannot be recorded or restored
+ * losslessly here, so it is refused instead of silently mangled.
+ */
+export function parsePorcelainStatus(buffer) {
+  const decoded = buffer.toString('utf8');
+  if (!Buffer.from(decoded, 'utf8').equals(buffer)) {
+    throw captureError(
+      CAPTURE_REASONS.unsupportedDirt,
+      'Refusing to capture: the worktree holds a path that is not valid UTF-8, which cannot be recorded or restored losslessly.',
+    );
+  }
+
+  const tokens = decoded.split(NUL);
+  const entries = [];
+
+  for (let index = 0; index < tokens.length; index += 1) {
+    const record = tokens[index];
+    if (!record) continue;
+    const fields = record.split(' ');
+
+    if (record.startsWith('1 ')) {
+      entries.push({
+        kind: 'ordinary',
+        xy: fields[1],
+        sub: fields[2],
+        path: fields.slice(8).join(' '),
+      });
+    } else if (record.startsWith('2 ')) {
+      entries.push({
+        kind: 'rename',
+        xy: fields[1],
+        sub: fields[2],
+        path: fields.slice(9).join(' '),
+        origPath: tokens[index + 1] ?? '',
+      });
+      index += 1;
+    } else if (record.startsWith('u ')) {
+      entries.push({
+        kind: 'unmerged',
+        xy: fields[1],
+        sub: fields[2],
+        path: fields.slice(10).join(' '),
+      });
+    } else if (record.startsWith('? ')) {
+      entries.push({ kind: 'untracked', path: record.slice(2) });
+    } else if (record.startsWith('! ')) {
+      entries.push({ kind: 'ignored', path: record.slice(2) });
+    }
+  }
+
+  return entries;
+}
+
+/**
+ * Rename detection is forced on rather than inherited. With `status.renames`
+ * disabled a staged rename is reported as an ordinary delete plus an ordinary
+ * add, so whether the dirt is classified `unsupported-dirt` would otherwise
+ * depend on the repository's configuration rather than on the tree.
+ */
+async function statusBytes(worktree) {
+  return await git(
+    worktree,
+    ['status', '--porcelain=v2', '-z', '--untracked-files=all'],
+    { binary: true, config: RENAME_DETECTION_CONFIG },
+  );
+}
+
+/**
+ * Content digest plus the one permission bit Git tracks. Comparing the full
+ * mode would produce false mismatches from umask differences between the
+ * captured worktree and a fresh checkout; the executable bit is the part Git
+ * actually carries, so it is the part the round trip must reproduce.
+ */
+async function fingerprintPath(worktree, relativePath) {
+  const absolute = join(worktree, relativePath);
+  try {
+    const entry = await lstat(absolute);
+    const executable = (entry.mode & 0o111) === 0 ? '-' : 'x';
+    const digest = sha256(await readFile(absolute));
+    return `${relativePath} | ${digest} | ${executable}`;
+  } catch {
+    return `${relativePath} | absent | -`;
+  }
+}
+
+/**
+ * A worktree snapshot is `HEAD`, the porcelain status, and a fingerprint for
+ * every path the status names. Porcelain v2 carries HEAD and index object ids
+ * but no worktree object id, so status alone cannot see a writer that keeps
+ * appending to an already-modified file, and status plus digests alone cannot
+ * see a writer that modifies a clean path and then commits it. Together they
+ * can.
+ */
+async function snapshotWorktree(worktree) {
+  const head = (await git(worktree, ['rev-parse', 'HEAD'])).trim();
+  const status = await statusBytes(worktree);
+  const entries = parsePorcelainStatus(status);
+  const paths = new Set();
+  for (const entry of entries) {
+    if (entry.kind === 'ignored') continue;
+    paths.add(entry.path);
+    if (entry.origPath) paths.add(entry.origPath);
+  }
+
+  const fingerprints = [];
+  for (const path of [...paths].sort()) {
+    fingerprints.push(await fingerprintPath(worktree, path));
+  }
+
+  return {
+    head,
+    status,
+    entries,
+    fingerprints: fingerprints.join('\n'),
+  };
+}
+
+function snapshotsMatch(first, second) {
+  return (
+    first.head === second.head &&
+    first.status.equals(second.status) &&
+    first.fingerprints === second.fingerprints
+  );
+}
+
+async function assertWriterQuiescent({ worktree, writerIdentity, intervalMs }) {
+  if (!writerIdentity) {
+    throw captureError(
+      CAPTURE_REASONS.activeWriter,
+      'Refusing to capture: the former child writer identity was not supplied, so quiescence cannot be established.',
+    );
+  }
+
+  const pidMatch = /^pid:(\d+)$/.exec(writerIdentity);
+  if (pidMatch) {
+    let alive = false;
+    try {
+      process.kill(Number(pidMatch[1]), 0);
+      alive = true;
+    } catch {
+      alive = false;
+    }
+    if (alive) {
+      throw captureError(
+        CAPTURE_REASONS.activeWriter,
+        `Refusing to capture: former child process ${pidMatch[1]} is still running.`,
+      );
+    }
+  }
+
+  if (!Number.isFinite(intervalMs) || intervalMs < MIN_QUIESCE_INTERVAL_MS) {
+    throw captureError(
+      CAPTURE_REASONS.invalidUsage,
+      `The quiescence interval must be a finite value of at least ${MIN_QUIESCE_INTERVAL_MS}ms.`,
+    );
+  }
+
+  const first = await snapshotWorktree(worktree);
+  await delay(intervalMs);
+  const second = await snapshotWorktree(worktree);
+  if (!snapshotsMatch(first, second)) {
+    throw captureError(
+      CAPTURE_REASONS.activeWriter,
+      'Refusing to capture: the worktree changed between two quiescence snapshots, so a writer is still active.',
+    );
+  }
+
+  return second;
+}
+
+async function assertNoInProgressOperation(worktree) {
+  const gitDir = resolve(
+    worktree,
+    (await git(worktree, ['rev-parse', '--git-dir'])).trim(),
+  );
+  for (const marker of IN_PROGRESS_MARKERS) {
+    if (await pathExists(join(gitDir, marker))) {
+      throw captureError(
+        CAPTURE_REASONS.unsupportedDirt,
+        `Refusing to capture: an in-progress ${marker} operation is not a supported dirt class.`,
+        { marker },
+      );
+    }
+  }
+}
+
+function withinBounds(path, boundedFiles) {
+  return boundedFiles.some(
+    (bound) => path === bound || path.startsWith(`${bound}/`),
+  );
+}
+
+function classifyDirt(entries, boundedFiles) {
+  const tracked = [];
+  const untracked = [];
+
+  for (const entry of entries) {
+    if (entry.kind === 'ignored') continue;
+
+    if (entry.kind === 'unmerged') {
+      throw captureError(
+        CAPTURE_REASONS.unsupportedDirt,
+        `Refusing to capture: unmerged path ${entry.path} is not a supported dirt class.`,
+      );
+    }
+
+    // A staged rename has no per-path restore: unstaging leaves the destination
+    // untracked and the source missing from the index, so the caller-owned
+    // restore below could not return the tree to its clean base.
+    if (entry.kind === 'rename') {
+      throw captureError(
+        CAPTURE_REASONS.unsupportedDirt,
+        `Refusing to capture: staged rename or copy ${entry.origPath} -> ${entry.path} is not a supported dirt class.`,
+      );
+    }
+
+    if (entry.kind === 'untracked') {
+      untracked.push(entry.path);
+      continue;
+    }
+
+    if (typeof entry.sub === 'string' && !entry.sub.startsWith('N')) {
+      throw captureError(
+        CAPTURE_REASONS.unsupportedDirt,
+        `Refusing to capture: submodule change at ${entry.path} is not a supported dirt class.`,
+      );
+    }
+
+    tracked.push(entry.path);
+  }
+
+  const overlap = tracked.filter((path) => untracked.includes(path));
+  if (overlap.length > 0) {
+    // One path cannot be both restored from HEAD and deleted as untracked; a
+    // staged deletion whose worktree file was recreated has no single action.
+    throw captureError(
+      CAPTURE_REASONS.unsupportedDirt,
+      `Refusing to capture: ${overlap.join(', ')} is both a tracked change and an untracked file, which has no single restore action.`,
+    );
+  }
+
+  const affectedPaths = [...new Set([...tracked, ...untracked])].sort();
+  const outOfBounds = affectedPaths.filter(
+    (path) => !withinBounds(path, boundedFiles),
+  );
+  if (outOfBounds.length > 0) {
+    throw captureError(
+      CAPTURE_REASONS.unsupportedDirt,
+      `Refusing to capture: ${outOfBounds.length} path(s) fall outside the phase bounded_files: ${outOfBounds.join(', ')}.`,
+      { outOfBounds },
+    );
+  }
+
+  return {
+    trackedPaths: [...new Set(tracked)].sort(),
+    untrackedPaths: [...new Set(untracked)].sort(),
+    affectedPaths,
+  };
+}
+
+/**
+ * The caller-owned restore, derived rather than guessed. A tracked path that
+ * exists in `HEAD` is reset from `HEAD`; a path staged as a new file has no
+ * `HEAD` content to restore, so it is unstaged and removed instead.
+ */
+async function buildRestorePlan(worktree, trackedPaths, untrackedPaths) {
+  const inHead = new Set();
+  if (trackedPaths.length > 0) {
+    const listed = await git(
+      worktree,
+      ['ls-tree', '-r', '-z', '--name-only', 'HEAD', '--', ...trackedPaths],
+      { literalPathspecs: true },
+    );
+    for (const path of listed.split(NUL)) {
+      if (path) inHead.add(path);
+    }
+  }
+
+  return [
+    ...trackedPaths.map((path) => ({
+      path,
+      action: inHead.has(path) ? 'restore-from-head' : 'unstage-and-remove',
+    })),
+    ...untrackedPaths.map((path) => ({ path, action: 'remove-untracked' })),
+  ];
+}
+
+async function writeArtifactFile(
+  artifactDir,
+  relativePath,
+  bytes,
+  files,
+  { executable = false } = {},
+) {
+  const target = join(artifactDir, relativePath);
+  await mkdir(dirname(target), { recursive: true });
+  await writeFile(target, bytes, { flag: 'wx' });
+  if (executable) await chmod(target, 0o755);
+  files.push({
+    path: relativePath,
+    sha256: sha256(bytes),
+    bytes: bytes.length,
+    executable,
+  });
+}
+
+async function applyArtifact(artifactDir, manifest, targetWorktree) {
+  const indexPatch = manifest.files.find((file) => file.path === 'index.patch');
+  const worktreePatch = manifest.files.find(
+    (file) => file.path === 'worktree.patch',
+  );
+
+  if (indexPatch && indexPatch.bytes > 0) {
+    await git(targetWorktree, [
+      'apply',
+      '--index',
+      '--whitespace=nowarn',
+      join(artifactDir, 'index.patch'),
+    ]);
+  }
+  if (worktreePatch && worktreePatch.bytes > 0) {
+    await git(targetWorktree, [
+      'apply',
+      '--whitespace=nowarn',
+      join(artifactDir, 'worktree.patch'),
+    ]);
+  }
+  for (const path of manifest.untrackedPaths) {
+    const mirrored = join('untracked', path);
+    const target = join(targetWorktree, path);
+    await mkdir(dirname(target), { recursive: true });
+    await copyFile(join(artifactDir, mirrored), target);
+    // Restore the executable bit from the manifest, not from whatever mode the
+    // mirrored copy happens to carry on disk; only the manifest is digest
+    // anchored.
+    const recorded = manifest.files.find((file) => file.path === mirrored);
+    if (recorded) await chmod(target, recorded.executable ? 0o755 : 0o644);
+  }
+}
+
+/**
+ * Prove the artifact as written to disk replays into a pristine replica of the
+ * captured `HEAD` and reproduces the captured worktree exactly. Any mismatch is
+ * `round-trip-failed`; the captured worktree is never written to.
+ *
+ * The seal is written here and nowhere else, and the digest and size a capture
+ * hands to the continuation are the ones this function returns. A capture that
+ * skipped this proof would therefore have no reference to publish and no seal
+ * for `--verify` to accept.
+ */
+export async function proveArtifactRoundTrip({ worktree, artifactDir }) {
+  const worktreeRoot = resolve(worktree);
+  const artifactRoot = resolve(artifactDir);
+  let manifestBytes;
+  let manifest;
+  try {
+    manifestBytes = await readFile(join(artifactRoot, MANIFEST_FILE));
+    manifest = JSON.parse(manifestBytes.toString('utf8'));
+  } catch (error) {
+    throw captureError(
+      CAPTURE_REASONS.roundTripFailed,
+      `Refusing to hand over the artifact: its manifest could not be read (${error.message}).`,
+    );
+  }
+
+  const snapshot = await snapshotWorktree(worktreeRoot);
+  await replayInto({
+    worktree: worktreeRoot,
+    artifactDir: artifactRoot,
+    manifest,
+    snapshot,
+  });
+
+  const manifestDigest = sha256(manifestBytes);
+  const size = (manifest.files ?? []).reduce(
+    (sum, file) => sum + file.bytes,
+    manifestBytes.length,
+  );
+  // Not exclusive: re-proving an artifact is legitimate and must be able to
+  // refresh the seal. The artifact directory itself is created exclusively, so
+  // there is never a foreign seal to clobber.
+  const proof = { manifestDigest, size, provenAt: new Date().toISOString() };
+  await writeFile(
+    join(artifactRoot, PROOF_FILE),
+    `${JSON.stringify(proof, null, 2)}\n`,
+  );
+
+  return {
+    ok: true,
+    head: manifest.head,
+    affectedPaths: manifest.affectedPaths ?? [],
+    manifestDigest,
+    size,
+  };
+}
+
+async function replayInto({ worktree, artifactDir, manifest, snapshot }) {
+  const scratch = await mkdtemp(join(tmpdir(), 'oat-capture-roundtrip-'));
+  const replica = join(scratch, 'replica');
+  let added = false;
+  let primary = null;
+  let cleanupError = null;
+
+  try {
+    await git(worktree, [
+      'worktree',
+      'add',
+      '--detach',
+      replica,
+      manifest.head,
+    ]);
+    added = true;
+    await applyArtifact(artifactDir, manifest, replica);
+
+    const replicaSnapshot = await snapshotWorktree(replica);
+    if (!snapshotsMatch(snapshot, replicaSnapshot)) {
+      throw captureError(
+        CAPTURE_REASONS.roundTripFailed,
+        'Refusing to hand over the artifact: the replayed worktree does not match the captured worktree.',
+      );
+    }
+  } catch (error) {
+    primary = error.reason
+      ? error
+      : captureError(
+          CAPTURE_REASONS.roundTripFailed,
+          `Refusing to hand over the artifact: the round trip failed (${error.message}).`,
+        );
+  } finally {
+    if (added) {
+      try {
+        await git(worktree, ['worktree', 'remove', '--force', replica]);
+      } catch (error) {
+        cleanupError = error;
+      }
+    }
+    try {
+      await rm(scratch, { recursive: true, force: true });
+    } catch (error) {
+      cleanupError ??= error;
+    }
+  }
+
+  if (primary) throw primary;
+  if (cleanupError) {
+    // A stale replay registration would leave the captured repository holding a
+    // worktree the lifecycle never authorized. Fail closed instead.
+    throw captureError(
+      CAPTURE_REASONS.roundTripFailed,
+      `Refusing to hand over the artifact: the replay worktree could not be removed (${cleanupError.message}).`,
+    );
+  }
+}
+
+/**
+ * Lexical containment is not enough: a symlinked ancestor can point the
+ * artifact directory straight back into the worktree this script must not write
+ * to, and an existing directory could be silently overwritten. Require a fresh
+ * directory whose resolved location is outside the worktree.
+ */
+export async function resolveArtifactLocation(artifactRoot) {
+  let ancestor = artifactRoot;
+  while (!(await pathExists(ancestor))) {
+    const parent = dirname(ancestor);
+    if (parent === ancestor) break;
+    ancestor = parent;
+  }
+  const realAncestor = await realpath(ancestor);
+  // `resolve(realAncestor, relative(...))`, never `slice(ancestor.length + 1)`:
+  // when the nearest existing ancestor is the filesystem root the extra `+ 1`
+  // eats the first character of the next component, corrupting the path this
+  // containment check is about to judge.
+  return {
+    ancestor,
+    realAncestor,
+    realArtifact:
+      ancestor === artifactRoot
+        ? realAncestor
+        : resolve(realAncestor, relative(ancestor, artifactRoot)),
+  };
+}
+
+async function assertResolvesOutsideWorktree(worktreeRoot, artifactRoot) {
+  const { realArtifact } = await resolveArtifactLocation(artifactRoot);
+  const realWorktree = await realpath(worktreeRoot);
+  if (
+    realArtifact === realWorktree ||
+    realArtifact.startsWith(realWorktree + sep)
+  ) {
+    throw captureError(
+      CAPTURE_REASONS.invalidUsage,
+      'The artifact directory must resolve outside the worktree it captures.',
+    );
+  }
+}
+
+async function resolveArtifactRoot(worktreeRoot, artifactDir) {
+  const artifactRoot = resolve(artifactDir);
+  if (await pathExists(artifactRoot)) {
+    throw captureError(
+      CAPTURE_REASONS.invalidUsage,
+      'The artifact directory must not already exist; capture creates it so that nothing can be overwritten.',
+    );
+  }
+
+  await assertResolvesOutsideWorktree(worktreeRoot, artifactRoot);
+  return artifactRoot;
+}
+
+/**
+ * Capture every index, worktree, and untracked component of a quiescent dirty
+ * worktree into an immutable artifact directory, prove the artifact replays
+ * byte-for-byte, seal it, and return the reference the caller records. The
+ * caller — not this script — performs the restore afterwards.
+ */
+export async function captureDirtyTree({
+  worktree,
+  artifactDir,
+  writerIdentity,
+  boundedFiles = [],
+  quiesceIntervalMs = DEFAULT_QUIESCE_INTERVAL_MS,
+}) {
+  if (!worktree || !artifactDir) {
+    throw captureError(
+      CAPTURE_REASONS.invalidUsage,
+      'Both --worktree and --artifact-dir are required.',
+    );
+  }
+
+  // The phase file boundary is not optional. An empty list would capture — and
+  // therefore hand a continuation permission to re-commit — dirt from outside
+  // the phase, which the surrounding contract lists as a terminal stop.
+  if (!Array.isArray(boundedFiles) || boundedFiles.length === 0) {
+    throw captureError(
+      CAPTURE_REASONS.invalidUsage,
+      'At least one --bounded-file value is required; repeat the flag once per in-phase path, because capture never runs without the phase file boundary.',
+    );
+  }
+
+  const worktreeRoot = resolve(worktree);
+  const artifactRoot = await resolveArtifactRoot(worktreeRoot, artifactDir);
+
+  await assertNoInProgressOperation(worktreeRoot);
+  const snapshot = await assertWriterQuiescent({
+    worktree: worktreeRoot,
+    writerIdentity,
+    intervalMs: quiesceIntervalMs,
+  });
+  const { trackedPaths, untrackedPaths, affectedPaths } = classifyDirt(
+    snapshot.entries,
+    boundedFiles,
+  );
+
+  // Untracked entries are captured as byte copies, which silently converts a
+  // symlink or a device node into a regular file. Refuse rather than restore
+  // something that is not what the lost child left behind.
+  const untrackedModes = new Map();
+  for (const path of untrackedPaths) {
+    const entry = await lstat(join(worktreeRoot, path));
+    if (!entry.isFile()) {
+      throw captureError(
+        CAPTURE_REASONS.unsupportedDirt,
+        `Refusing to capture: untracked path ${path} is not a regular file and cannot be copied faithfully.`,
+      );
+    }
+    untrackedModes.set(path, (entry.mode & 0o111) !== 0);
+  }
+
+  const indexPatch = await git(
+    worktreeRoot,
+    ['diff', '--cached', '--binary', '--no-color', '--no-ext-diff'],
+    { binary: true, config: RENAME_DETECTION_CONFIG },
+  );
+  const worktreePatch = await git(
+    worktreeRoot,
+    ['diff', '--binary', '--no-color', '--no-ext-diff'],
+    { binary: true, config: RENAME_DETECTION_CONFIG },
+  );
+  const indexStat = await git(
+    worktreeRoot,
+    ['diff', '--cached', '--stat', '--no-color'],
+    { config: RENAME_DETECTION_CONFIG },
+  );
+  const untrackedBytes = new Map();
+  for (const path of untrackedPaths) {
+    untrackedBytes.set(path, await readFile(join(worktreeRoot, path)));
+  }
+  const restorePlan = await buildRestorePlan(
+    worktreeRoot,
+    trackedPaths,
+    untrackedPaths,
+  );
+
+  // Nothing is written anywhere until the worktree is proven unchanged across
+  // the whole read, so an interrupted capture leaves no half-written artifact.
+  if (!snapshotsMatch(snapshot, await snapshotWorktree(worktreeRoot))) {
+    throw captureError(
+      CAPTURE_REASONS.activeWriter,
+      'Refusing to capture: the worktree changed while it was being read, so a writer is still active.',
+    );
+  }
+
+  // Exclusive, non-recursive: a directory raced into existence after the
+  // precheck fails here rather than being adopted, and the caller must have
+  // already created the parent it chose.
+  try {
+    await mkdir(artifactRoot);
+  } catch (error) {
+    throw captureError(
+      CAPTURE_REASONS.invalidUsage,
+      `The artifact directory could not be created exclusively beneath an existing parent: ${error.message}`,
+    );
+  }
+  // Re-check after creation: the containment decision above was made against a
+  // path that did not exist yet, so a directory or symlink substituted in the
+  // meantime would otherwise go unnoticed.
+  await assertResolvesOutsideWorktree(worktreeRoot, artifactRoot);
+  const files = [];
+  await writeArtifactFile(artifactRoot, 'index.patch', indexPatch, files);
+  await writeArtifactFile(artifactRoot, 'worktree.patch', worktreePatch, files);
+  for (const path of untrackedPaths) {
+    await writeArtifactFile(
+      artifactRoot,
+      join('untracked', path),
+      untrackedBytes.get(path),
+      files,
+      { executable: untrackedModes.get(path) },
+    );
+  }
+
+  const components = [];
+  if (indexPatch.length > 0) components.push('index');
+  if (worktreePatch.length > 0) components.push('worktree');
+  if (untrackedPaths.length > 0) components.push('untracked');
+
+  const manifest = {
+    schemaVersion: 1,
+    capturedAt: new Date().toISOString(),
+    worktree: worktreeRoot,
+    head: snapshot.head,
+    writerIdentity,
+    components,
+    affectedPaths,
+    trackedPaths,
+    untrackedPaths,
+    restorePlan,
+    stat: indexStat,
+    files,
+  };
+  const manifestBytes = Buffer.from(
+    `${JSON.stringify(manifest, null, 2)}\n`,
+    'utf8',
+  );
+  await writeFile(join(artifactRoot, MANIFEST_FILE), manifestBytes, {
+    flag: 'wx',
+  });
+  // The proof is what seals the artifact and what produces the digest and size
+  // this capture publishes, so an unproven artifact has neither a reference to
+  // hand over nor a seal `--verify` will accept.
+  const { manifestDigest, size } = await proveArtifactRoundTrip({
+    worktree: worktreeRoot,
+    artifactDir: artifactRoot,
+  });
+
+  return {
+    ok: true,
+    artifact: artifactRoot,
+    manifestDigest,
+    size,
+    components,
+    affectedPaths,
+    restorePlan,
+    stat: indexStat,
+  };
+}
+
+/**
+ * Re-verify an artifact before it is applied: the round-trip seal, the
+ * manifest, and every named file must be readable and must still match the
+ * digest and size the continuation brief carries, the artifact directory must
+ * hold nothing the manifest does not list, and the captured `HEAD` must equal
+ * the `HEAD` the caller is about to patch. A tampered, unreadable, unproven, or
+ * base-mismatched artifact stops here.
+ */
+export async function verifyArtifact({
+  artifactDir,
+  manifestDigest,
+  size,
+  expectedHead,
+}) {
+  const artifactRoot = resolve(artifactDir);
+
+  if (typeof manifestDigest !== 'string' || manifestDigest.length === 0) {
+    throw captureError(
+      CAPTURE_REASONS.artifactVerificationFailed,
+      'The expected --manifest-digest from the continuation brief is required to verify an artifact.',
+    );
+  }
+  if (typeof size !== 'number' || !Number.isInteger(size) || size < 0) {
+    throw captureError(
+      CAPTURE_REASONS.artifactVerificationFailed,
+      `The expected --size from the continuation brief must be a non-negative integer; received ${JSON.stringify(size)}.`,
+    );
+  }
+  if (typeof expectedHead !== 'string' || expectedHead.length === 0) {
+    throw captureError(
+      CAPTURE_REASONS.artifactVerificationFailed,
+      'The --expected-head the artifact will be applied onto is required; an artifact captured at a different base cannot be replayed safely.',
+    );
+  }
+
+  let proof;
+  try {
+    proof = JSON.parse(await readFile(join(artifactRoot, PROOF_FILE), 'utf8'));
+  } catch (error) {
+    throw captureError(
+      CAPTURE_REASONS.artifactVerificationFailed,
+      `Artifact round-trip seal is missing or unreadable, so the artifact was never proven to replay: ${error.message}`,
+    );
+  }
+  if (
+    typeof proof !== 'object' ||
+    proof === null ||
+    typeof proof.manifestDigest !== 'string' ||
+    typeof proof.size !== 'number'
+  ) {
+    throw captureError(
+      CAPTURE_REASONS.artifactVerificationFailed,
+      'Artifact round-trip seal is malformed, so the artifact cannot be treated as proven.',
+    );
+  }
+
+  let manifestBytes;
+  try {
+    manifestBytes = await readFile(join(artifactRoot, MANIFEST_FILE));
+  } catch (error) {
+    throw captureError(
+      CAPTURE_REASONS.artifactVerificationFailed,
+      `Artifact manifest is unreadable: ${error.message}`,
+    );
+  }
+
+  const actualManifestDigest = sha256(manifestBytes);
+  for (const [label, expected, actual] of [
+    ['brief manifest digest', manifestDigest, actualManifestDigest],
+    ['sealed manifest digest', proof.manifestDigest, actualManifestDigest],
+    ['sealed size', proof.size, size],
+  ]) {
+    if (expected !== actual) {
+      throw captureError(
+        CAPTURE_REASONS.artifactVerificationFailed,
+        `Artifact ${label} mismatch: expected ${expected}, found ${actual}.`,
+      );
+    }
+  }
+
+  let manifest;
+  try {
+    manifest = JSON.parse(manifestBytes.toString('utf8'));
+  } catch (error) {
+    throw captureError(
+      CAPTURE_REASONS.artifactVerificationFailed,
+      `Artifact manifest is not valid JSON: ${error.message}`,
+    );
+  }
+
+  let total = manifestBytes.length;
+  for (const file of manifest.files ?? []) {
+    let bytes;
+    try {
+      bytes = await readFile(join(artifactRoot, file.path));
+    } catch (error) {
+      throw captureError(
+        CAPTURE_REASONS.artifactVerificationFailed,
+        `Artifact file ${file.path} is unreadable: ${error.message}`,
+      );
+    }
+    if (bytes.length !== file.bytes) {
+      throw captureError(
+        CAPTURE_REASONS.artifactVerificationFailed,
+        `Artifact file ${file.path} size mismatch: expected ${file.bytes}, found ${bytes.length}.`,
+      );
+    }
+    const digest = sha256(bytes);
+    if (digest !== file.sha256) {
+      throw captureError(
+        CAPTURE_REASONS.artifactVerificationFailed,
+        `Artifact file ${file.path} digest mismatch: expected ${file.sha256}, found ${digest}.`,
+      );
+    }
+    const executable =
+      ((await lstat(join(artifactRoot, file.path))).mode & 0o111) !== 0;
+    if (executable !== Boolean(file.executable)) {
+      throw captureError(
+        CAPTURE_REASONS.artifactVerificationFailed,
+        `Artifact file ${file.path} executable-bit mismatch: expected ${Boolean(file.executable)}, found ${executable}.`,
+      );
+    }
+    total += bytes.length;
+  }
+
+  if (total !== size) {
+    throw captureError(
+      CAPTURE_REASONS.artifactVerificationFailed,
+      `Artifact aggregate size mismatch: expected ${size}, found ${total}.`,
+    );
+  }
+
+  // The aggregate size only covers what the manifest lists, so enumerate the
+  // directory as well: an artifact holding anything the manifest does not name
+  // is not the immutable artifact the capture sealed.
+  const listed = (manifest.files ?? []).map((file) => file.path);
+  const allowed = new Set([MANIFEST_FILE, PROOF_FILE, ...listed]);
+  // Directories only exist to hold listed files, so the permitted set is
+  // exactly the parent chain of those files. Anything else — including an empty
+  // directory — is not part of the artifact the capture sealed.
+  const allowedDirectories = new Set();
+  for (const path of listed) {
+    let parent = dirname(path);
+    while (parent !== '.' && parent !== sep && parent !== '') {
+      allowedDirectories.add(parent);
+      parent = dirname(parent);
+    }
+  }
+  const present = await readdir(artifactRoot, {
+    recursive: true,
+    withFileTypes: true,
+  });
+  for (const entry of present) {
+    const relativePath = relative(
+      artifactRoot,
+      join(entry.parentPath ?? entry.path, entry.name),
+    );
+    const permitted = entry.isDirectory()
+      ? allowedDirectories.has(relativePath)
+      : allowed.has(relativePath);
+    if (!permitted) {
+      throw captureError(
+        CAPTURE_REASONS.artifactVerificationFailed,
+        `Artifact holds ${relativePath}, which the manifest does not list.`,
+      );
+    }
+  }
+
+  // `git apply` matches on hunk context, not on base identity, so a patch can
+  // apply cleanly at the wrong commit and silently produce wrong content.
+  // Integrity is not base agreement; check both.
+  if (manifest.head !== expectedHead) {
+    throw captureError(
+      CAPTURE_REASONS.artifactVerificationFailed,
+      `Artifact base mismatch: captured at ${manifest.head}, but the target HEAD is ${expectedHead}.`,
+    );
+  }
+
+  return {
+    ok: true,
+    artifact: artifactRoot,
+    manifestDigest: actualManifestDigest,
+    size: total,
+    components: manifest.components ?? [],
+    affectedPaths: manifest.affectedPaths ?? [],
+    restorePlan: manifest.restorePlan ?? [],
+    head: manifest.head ?? null,
+  };
+}
+
+function parseArguments(argv) {
+  const options = { boundedFiles: [], verify: false };
+
+  for (let index = 0; index < argv.length; index += 1) {
+    const flag = argv[index];
+    if (flag === '--verify') {
+      options.verify = true;
+      continue;
+    }
+    const value = argv[index + 1];
+    if (value === undefined) {
+      throw captureError(
+        CAPTURE_REASONS.invalidUsage,
+        `Missing value for ${flag}.`,
+      );
+    }
+    index += 1;
+    if (flag === '--worktree') options.worktree = value;
+    else if (flag === '--artifact-dir') options.artifactDir = value;
+    else if (flag === '--writer-identity') options.writerIdentity = value;
+    else if (flag === '--manifest-digest') options.manifestDigest = value;
+    else if (flag === '--expected-head') options.expectedHead = value;
+    else if (flag === '--size') options.size = Number(value);
+    else if (flag === '--quiesce-interval-ms') {
+      options.quiesceIntervalMs = Number(value);
+    }
+    // Repeated `--bounded-file` only: a delimited list would split a filename
+    // that legitimately contains the delimiter and could widen the boundary to
+    // a shorter prefix path.
+    else if (flag === '--bounded-file') options.boundedFiles.push(value);
+    else {
+      throw captureError(
+        CAPTURE_REASONS.invalidUsage,
+        `Unsupported argument: ${flag}.`,
+      );
+    }
+  }
+
+  return options;
+}
+
+async function main(argv) {
+  try {
+    const options = parseArguments(argv);
+    const result = options.verify
+      ? await verifyArtifact(options)
+      : await captureDirtyTree(options);
+    process.stdout.write(`${JSON.stringify(result, null, 2)}\n`);
+    return 0;
+  } catch (error) {
+    const reason = error.reason ?? CAPTURE_REASONS.invalidUsage;
+    process.stderr.write(
+      `${JSON.stringify({ ok: false, reason, message: error.message })}\n`,
+    );
+    return EXIT_CODES[reason] ?? 1;
+  }
+}
+
+/**
+ * Direct invocation, compared as canonical paths on both sides. Comparing a raw
+ * `process.argv[1]` against `import.meta.url` makes the CLI a silent no-op that
+ * exits 0 whenever the skill is reached through a symlinked install root, and
+ * canonicalizing only one side has the same effect under
+ * `--preserve-symlinks-main`, which keeps the link in `import.meta.url`. Either
+ * way the caller reads "exited 0" as "verified" — the fail-open shape the
+ * contracts exist to prevent.
+ */
+function isDirectInvocation(invokedPath) {
+  if (!invokedPath) return false;
+  try {
+    return (
+      realpathSync(fileURLToPath(import.meta.url)) ===
+      realpathSync(resolve(invokedPath))
+    );
+  } catch {
+    return false;
+  }
+}
+
+if (isDirectInvocation(process.argv[1])) {
+  process.exitCode = await main(process.argv.slice(2));
+}