@open-agent-toolkit/cli 0.2.41 → 0.2.45

package/dist/commands/init/index.js

@@ -2,6 +2,7 @@ import { execSync } from 'node:child_process';
 import { mkdir } from 'node:fs/promises';
 import { basename, isAbsolute, join, relative, resolve, sep } from 'node:path';
 import { buildCommandContext, } from '../../app/command-context.js';
+import { applyOatCoreGitattributes, } from '../init/gitattributes.js';
 import { applyOatCoreGitignore, } from '../init/gitignore.js';
 import { applyGitignore } from '../local/apply.js';
 import { addLocalPaths } from '../local/manage.js';
@@ -165,6 +166,7 @@ function createDependencies() {
         saveSyncConfig,
         getConfigAwareAdapters,
         applyOatCoreGitignore,
+        applyOatCoreGitattributes,
         dirExists,
         readOatConfig,
         resolveLocalPaths,
@@ -506,6 +508,7 @@ async function runInitCommand(context, dependencies, hookFlag, setupFlag) {
         await dependencies.ensureCanonicalDirs(scopeRoot, scope);
         if (scope === 'project') {
             await dependencies.applyOatCoreGitignore(scopeRoot);
+            await dependencies.applyOatCoreGitattributes(scopeRoot);
         }
         const manifestPath = join(scopeRoot, '.oat', 'sync', 'manifest.json');
         let manifest = await dependencies.loadManifest(manifestPath);

package/dist/commands/init/managed-block.d.ts

@@ -0,0 +1,10 @@
+export interface ApplyManagedBlockResult {
+    action: 'created' | 'updated' | 'no-change';
+    entries: string[];
+}
+export declare function applyManagedBlock(filePath: string, options: {
+    start: string;
+    end: string;
+    entries: string[];
+}): Promise<ApplyManagedBlockResult>;
+//# sourceMappingURL=managed-block.d.ts.map

package/dist/commands/init/managed-block.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"managed-block.d.ts","sourceRoot":"","sources":["../../../src/commands/init/managed-block.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,uBAAuB;IACtC,MAAM,EAAE,SAAS,GAAG,SAAS,GAAG,WAAW,CAAC;IAC5C,OAAO,EAAE,MAAM,EAAE,CAAC;CACnB;AAaD,wBAAsB,iBAAiB,CACrC,QAAQ,EAAE,MAAM,EAChB,OAAO,EAAE;IAAE,KAAK,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,EAAE,CAAA;CAAE,GACzD,OAAO,CAAC,uBAAuB,CAAC,CA8ClC"}

package/dist/commands/init/managed-block.js

@@ -0,0 +1,40 @@
+import { readFile, writeFile } from 'node:fs/promises';
+import { fileExists } from '../../fs/io.js';
+function preserveUnmanagedTail(tail, entries) {
+    const managedEntries = new Set(entries);
+    const lines = tail.startsWith('\n')
+        ? tail.slice(1).split('\n')
+        : tail.split('\n');
+    return lines.filter((line) => !managedEntries.has(line)).join('\n');
+}
+export async function applyManagedBlock(filePath, options) {
+    const section = `${options.start}\n${options.entries.join('\n')}\n${options.end}`;
+    if (!(await fileExists(filePath))) {
+        await writeFile(filePath, `${section}\n`, 'utf8');
+        return { action: 'created', entries: options.entries };
+    }
+    const content = await readFile(filePath, 'utf8');
+    const startIndex = content.indexOf(options.start);
+    const endIndex = content.indexOf(options.end);
+    if (startIndex !== -1 && endIndex !== -1 && endIndex >= startIndex) {
+        const existing = content.slice(startIndex, endIndex + options.end.length);
+        if (existing === section) {
+            return { action: 'no-change', entries: options.entries };
+        }
+        await writeFile(filePath, `${content.slice(0, startIndex)}${section}${content.slice(endIndex + options.end.length)}`, 'utf8');
+        return { action: 'updated', entries: options.entries };
+    }
+    if (startIndex !== -1) {
+        const prefix = content.slice(0, startIndex);
+        const preservedTail = preserveUnmanagedTail(content.slice(startIndex + options.start.length), options.entries);
+        const prefixSeparator = prefix.length === 0 || prefix.endsWith('\n') ? '' : '\n';
+        const preservedSuffix = preservedTail.length === 0
+            ? '\n'
+            : `\n${preservedTail.replace(/^\n+/, '')}`;
+        await writeFile(filePath, `${prefix}${prefixSeparator}${section}${preservedSuffix}`, 'utf8');
+        return { action: 'updated', entries: options.entries };
+    }
+    const separator = content.endsWith('\n') ? '\n' : '\n\n';
+    await writeFile(filePath, `${content}${separator}${section}\n`, 'utf8');
+    return { action: 'updated', entries: options.entries };
+}

package/dist/commands/init/tools/workflows/install-workflows.js

@@ -110,7 +110,7 @@ export async function installWorkflows(options) {
     if (!config.projects?.root?.trim()) {
         await writeOatConfig(options.targetRoot, {
             ...config,
-            projects: { root: '.oat/projects/shared' },
+            projects: { ...config.projects, root: '.oat/projects/shared' },
         });
         result.projectsRootConfigInitialized = true;
     }

package/dist/commands/local/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/commands/local/index.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAOpC,wBAAgB,kBAAkB,IAAI,OAAO,CAmS5C"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/commands/local/index.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAOpC,wBAAgB,kBAAkB,IAAI,OAAO,CAwS5C"}

package/dist/commands/local/index.js

@@ -144,6 +144,7 @@ export function createLocalCommand() {
             }
             const direction = options.from ? 'from' : 'to';
             const result = await syncLocalPaths({
+                repoRoot,
                 sourceRoot: repoRoot,
                 targetRoot: worktreePath,
                 localPaths,
@@ -155,7 +156,10 @@ export function createLocalCommand() {
             }
             else {
                 for (const entry of result.entries) {
-                    context.logger.info(`  ${entry.status.padEnd(8)} ${entry.path}`);
+                    const reason = entry.status === 'skipped' && entry.reason
+                        ? ` (${entry.reason})`
+                        : '';
+                    context.logger.info(`  ${entry.status.padEnd(8)} ${entry.path}${reason}`);
                 }
                 context.logger.info(`\nSync complete: ${result.copied} copied, ${result.skipped} skipped, ${result.missing} missing`);
             }

package/dist/commands/local/sync.d.ts

@@ -1,7 +1,9 @@
+import { type GitRunner } from '../project/sync/git.js';
 export type SyncStatus = 'copied' | 'skipped' | 'missing';
 export interface SyncEntry {
     path: string;
     status: SyncStatus;
+    reason?: 'nested-worktree';
 }
 export interface SyncResult {
     entries: SyncEntry[];
@@ -10,11 +12,13 @@ export interface SyncResult {
     missing: number;
 }
 export interface SyncOptions {
+    repoRoot?: string;
     sourceRoot: string;
     targetRoot: string;
     localPaths: string[];
     direction: 'to' | 'from';
     force: boolean;
+    gitRunner?: GitRunner;
 }
 export declare function syncLocalPaths(options: SyncOptions): Promise<SyncResult>;
 //# sourceMappingURL=sync.d.ts.map

package/dist/commands/local/sync.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"sync.d.ts","sourceRoot":"","sources":["../../../src/commands/local/sync.ts"],"names":[],"mappings":"AAOA,MAAM,MAAM,UAAU,GAAG,QAAQ,GAAG,SAAS,GAAG,SAAS,CAAC;AAE1D,MAAM,WAAW,SAAS;IACxB,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,UAAU,CAAC;CACpB;AAED,MAAM,WAAW,UAAU;IACzB,OAAO,EAAE,SAAS,EAAE,CAAC;IACrB,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,WAAW;IAC1B,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,MAAM,EAAE,CAAC;IACrB,SAAS,EAAE,IAAI,GAAG,MAAM,CAAC;IACzB,KAAK,EAAE,OAAO,CAAC;CAChB;AAED,wBAAsB,cAAc,CAClC,OAAO,EAAE,WAAW,GACnB,OAAO,CAAC,UAAU,CAAC,CAoDrB"}
+{"version":3,"file":"sync.d.ts","sourceRoot":"","sources":["../../../src/commands/local/sync.ts"],"names":[],"mappings":"AAGA,OAAO,EAAoB,KAAK,SAAS,EAAE,MAAM,4BAA4B,CAAC;AAM9E,MAAM,MAAM,UAAU,GAAG,QAAQ,GAAG,SAAS,GAAG,SAAS,CAAC;AAE1D,MAAM,WAAW,SAAS;IACxB,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,UAAU,CAAC;IACnB,MAAM,CAAC,EAAE,iBAAiB,CAAC;CAC5B;AAED,MAAM,WAAW,UAAU;IACzB,OAAO,EAAE,SAAS,EAAE,CAAC;IACrB,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,WAAW;IAC1B,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,MAAM,EAAE,CAAC;IACrB,SAAS,EAAE,IAAI,GAAG,MAAM,CAAC;IACzB,KAAK,EAAE,OAAO,CAAC;IACf,SAAS,CAAC,EAAE,SAAS,CAAC;CACvB;AAuID,wBAAsB,cAAc,CAClC,OAAO,EAAE,WAAW,GACnB,OAAO,CAAC,UAAU,CAAC,CAoFrB"}

package/dist/commands/local/sync.js

@@ -1,13 +1,116 @@
-import { rm } from 'node:fs/promises';
-import { join } from 'node:path';
+import { lstat, readdir, realpath, rm } from 'node:fs/promises';
+import { dirname, isAbsolute, join, relative, resolve, sep } from 'node:path';
+import { defaultGitRunner } from '../project/sync/git.js';
+import { CliError } from '../../errors/cli-error.js';
 import { copyDirectory, dirExists, fileExists } from '../../fs/io.js';
 import { expandLocalPaths } from './expand.js';
+async function canonicalizeLocalSyncPath(path) {
+    const absolute = resolve(path);
+    try {
+        return await realpath(absolute);
+    }
+    catch (error) {
+        if (!(error instanceof Error && 'code' in error && error.code === 'ENOENT')) {
+            throw error;
+        }
+        const parent = dirname(absolute);
+        if (parent === absolute)
+            return absolute;
+        return join(await canonicalizeLocalSyncPath(parent), relative(parent, absolute));
+    }
+}
+function pathsOverlap(left, right) {
+    const leftToRight = relative(left, right);
+    const rightToLeft = relative(right, left);
+    const isWithin = (candidate) => candidate === '' ||
+        (candidate !== '..' &&
+            !candidate.startsWith(`..${sep}`) &&
+            !isAbsolute(candidate));
+    return isWithin(leftToRight) || isWithin(rightToLeft);
+}
+function worktreeOwnsRoot(worktreePath, rootPath) {
+    const relativeRoot = relative(worktreePath, rootPath);
+    return (relativeRoot === '' ||
+        (relativeRoot !== '..' &&
+            !relativeRoot.startsWith(`..${sep}`) &&
+            !isAbsolute(relativeRoot)));
+}
+async function registeredNestedWorktrees(repoRoot, sourceRoot, targetRoot, git) {
+    const result = await git.run(['worktree', 'list', '--porcelain'], {
+        cwd: repoRoot,
+        allowFailure: true,
+    });
+    if (result.code !== 0) {
+        throw new CliError(`Unable to inspect registered worktrees before local sync: ${result.stderr || result.stdout || `git worktree list failed with exit ${result.code}`}`, 2);
+    }
+    const records = result.stdout ? result.stdout.split(/\n\n+/) : [];
+    const registered = [];
+    for (const record of records) {
+        const lines = record.split('\n').filter(Boolean);
+        const worktreeLines = lines.filter((line) => line.startsWith('worktree '));
+        const worktreeLine = worktreeLines[0];
+        if (lines.length === 0 ||
+            worktreeLines.length !== 1 ||
+            typeof worktreeLine !== 'string' ||
+            !worktreeLine.startsWith('worktree ') ||
+            lines[0] !== worktreeLine ||
+            worktreeLine.slice('worktree '.length).trim() === '') {
+            throw new CliError('Malformed `git worktree list --porcelain` output; refusing local sync.', 2);
+        }
+        registered.push(await canonicalizeLocalSyncPath(worktreeLine.slice('worktree '.length)));
+    }
+    if (registered.length === 0) {
+        throw new CliError('Git returned no registered worktrees; refusing repository-aware local sync.', 2);
+    }
+    const supportedRoots = await Promise.all([
+        canonicalizeLocalSyncPath(sourceRoot),
+        canonicalizeLocalSyncPath(targetRoot),
+    ]);
+    return [...new Set(registered)].filter((worktreePath) => !supportedRoots.some((rootPath) => worktreeOwnsRoot(worktreePath, rootPath)));
+}
+async function containsNestedGitMarker(root) {
+    let entries;
+    try {
+        entries = await readdir(root, { withFileTypes: true });
+    }
+    catch (error) {
+        if (error instanceof Error &&
+            'code' in error &&
+            (error.code === 'ENOENT' || error.code === 'ENOTDIR')) {
+            return false;
+        }
+        throw error;
+    }
+    for (const entry of entries) {
+        if (entry.name === '.git')
+            return true;
+        const entryPath = join(root, entry.name);
+        if (entry.isSymbolicLink()) {
+            // Local sync does not follow directory symlinks while looking for a
+            // worktree boundary. A symlink target is copied as a link by the I/O
+            // layer and cannot authorize recursive deletion of its destination.
+            continue;
+        }
+        if (entry.isDirectory() && (await containsNestedGitMarker(entryPath))) {
+            return true;
+        }
+        if (!entry.isDirectory() && !entry.isFile()) {
+            // Force filesystem errors to surface instead of silently treating an
+            // unfamiliar entry as safe.
+            await lstat(entryPath);
+        }
+    }
+    return false;
+}
 export async function syncLocalPaths(options) {
     const { sourceRoot, targetRoot, localPaths, direction, force } = options;
     // Determine actual from/to based on direction
     const fromRoot = direction === 'to' ? sourceRoot : targetRoot;
     const toRoot = direction === 'to' ? targetRoot : sourceRoot;
     const entries = [];
+    const registered = options.repoRoot
+        ? await registeredNestedWorktrees(options.repoRoot, sourceRoot, targetRoot, options.gitRunner ?? defaultGitRunner)
+        : [];
     const { resolved, missingGlobs } = await expandLocalPaths(fromRoot, localPaths);
     for (const pattern of missingGlobs) {
         entries.push({ path: pattern, status: 'missing' });
@@ -20,6 +123,24 @@ export async function syncLocalPaths(options) {
             entries.push({ path: localPath, status: 'missing' });
             continue;
         }
+        // This check must cover the whole selected entry on both sides and must
+        // happen before force-removal. A localPath may be an ancestor of a linked
+        // worktree, so checking only `<entry>/.git` is insufficient.
+        const [canonicalSourcePath, canonicalDestPath] = await Promise.all([
+            canonicalizeLocalSyncPath(sourcePath),
+            canonicalizeLocalSyncPath(destPath),
+        ]);
+        if (registered.some((worktreePath) => pathsOverlap(canonicalSourcePath, worktreePath) ||
+            pathsOverlap(canonicalDestPath, worktreePath)) ||
+            (await containsNestedGitMarker(sourcePath)) ||
+            (await containsNestedGitMarker(destPath))) {
+            entries.push({
+                path: localPath,
+                status: 'skipped',
+                reason: 'nested-worktree',
+            });
+            continue;
+        }
         const destExists = (await dirExists(destPath)) || (await fileExists(destPath));
         if (destExists && !force) {
             entries.push({ path: localPath, status: 'skipped' });

package/dist/commands/pjm/adoption.d.ts

@@ -1,3 +1,4 @@
+import { type OatConfig } from '../../config/oat-config.js';
 export type PjmAdoptionState = 'declared' | 'inferred-legacy' | 'partial-initialization' | 'none';
 export interface PjmAdoption {
     state: PjmAdoptionState;
@@ -7,6 +8,7 @@ export interface PjmAdoption {
 export interface ResolvePjmAdoptionOptions {
     projectRoot: string;
     repoRoot: string;
+    config?: OatConfig;
 }
 export declare function resolvePjmAdoption(options: ResolvePjmAdoptionOptions): Promise<PjmAdoption>;
 //# sourceMappingURL=adoption.d.ts.map

package/dist/commands/pjm/adoption.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"adoption.d.ts","sourceRoot":"","sources":["../../../src/commands/pjm/adoption.ts"],"names":[],"mappings":"AAOA,MAAM,MAAM,gBAAgB,GACxB,UAAU,GACV,iBAAiB,GACjB,wBAAwB,GACxB,MAAM,CAAC;AAEX,MAAM,WAAW,WAAW;IAC1B,KAAK,EAAE,gBAAgB,CAAC;IACxB,QAAQ,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,cAAc,GAAG,IAAI,CAAC;CACjC;AAED,MAAM,WAAW,yBAAyB;IACxC,WAAW,EAAE,MAAM,CAAC;IACpB,QAAQ,EAAE,MAAM,CAAC;CAClB;AAmBD,wBAAsB,kBAAkB,CACtC,OAAO,EAAE,yBAAyB,GACjC,OAAO,CAAC,WAAW,CAAC,CA8BtB"}
+{"version":3,"file":"adoption.d.ts","sourceRoot":"","sources":["../../../src/commands/pjm/adoption.ts"],"names":[],"mappings":"AAGA,OAAO,EAAiB,KAAK,SAAS,EAAE,MAAM,oBAAoB,CAAC;AAInE,MAAM,MAAM,gBAAgB,GACxB,UAAU,GACV,iBAAiB,GACjB,wBAAwB,GACxB,MAAM,CAAC;AAEX,MAAM,WAAW,WAAW;IAC1B,KAAK,EAAE,gBAAgB,CAAC;IACxB,QAAQ,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,cAAc,GAAG,IAAI,CAAC;CACjC;AAED,MAAM,WAAW,yBAAyB;IACxC,WAAW,EAAE,MAAM,CAAC;IACpB,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,CAAC,EAAE,SAAS,CAAC;CACpB;AAmBD,wBAAsB,kBAAkB,CACtC,OAAO,EAAE,yBAAyB,GACjC,OAAO,CAAC,WAAW,CAAC,CA8BtB"}

package/dist/commands/pjm/adoption.js

@@ -18,7 +18,7 @@ async function pathExists(path) {
     }
 }
 export async function resolvePjmAdoption(options) {
-    const config = await readOatConfig(options.projectRoot);
+    const config = options.config ?? (await readOatConfig(options.projectRoot));
     if (config.pjm?.initialized === true) {
         return {
             state: 'declared',

package/dist/commands/project/archive/archive-utils.d.ts

@@ -1,4 +1,8 @@
 import { rename } from 'node:fs/promises';
+import { type GitRunner } from '../../project/sync/git.js';
+import { readSyncedRecord, writeSyncedRecord } from '../../project/sync/record.js';
+import { commitRecordChange, preflightSyncedCheckout, removeSyncedCheckout } from '../../project/sync/ref-sync.js';
+import { type ProjectScope } from '../../shared/project-scope.js';
 import { copyDirectory, copySingleFile, dirExists, ensureDir, fileExists } from '../../../fs/io.js';
 export type ExecFileResult = {
     stdout: string;
@@ -56,6 +60,7 @@ export interface ArchiveProjectOnCompletionOptions {
      * semantics as `awsProfile`.
      */
     awsRegion?: string | null;
+    commit?: boolean;
 }
 export interface ResolvePrimaryRepoRootDependencies {
     gitExecFile?: ExecFileLike;
@@ -66,6 +71,8 @@ export interface ResolveArchiveProjectTargetOptions {
     repoRoot: string;
     projectsRoot: string;
     projectName: string;
+    archiveSnapshot?: string;
+    archiveScope?: ProjectScope;
 }
 export interface ResolveArchiveProjectTargetDependencies extends ResolvePrimaryRepoRootDependencies {
     timestamp?: () => string;
@@ -92,6 +99,12 @@ interface ArchiveProjectOnCompletionDependencies extends EnsureS3ArchiveAccessDe
     fileExists?: typeof fileExists;
     renamePath?: typeof rename;
     timestamp?: () => string;
+    gitRunner?: GitRunner;
+    readSyncedRecord?: typeof readSyncedRecord;
+    writeSyncedRecord?: typeof writeSyncedRecord;
+    preflightSyncedCheckout?: typeof preflightSyncedCheckout;
+    removeSyncedCheckout?: typeof removeSyncedCheckout;
+    commitRecordChange?: typeof commitRecordChange;
 }
 export interface ArchiveProjectRecapExportV1 {
     sourceRunRoot: string;
@@ -104,9 +117,13 @@ export interface ArchiveProjectRecapExportV1 {
 export interface ArchiveProjectOnCompletionResult {
     archivePath: string;
     s3Path: string | null;
+    /** Absolute filesystem path; normalize only when rendering repository links. */
     summaryExportFile: string | null;
     projectRecapExport: ArchiveProjectRecapExportV1 | null;
     warnings: string[];
+    lifecycleCommit: string | null;
+    recapExportPaths: string[];
+    snapshotId: string;
 }
 export declare const ARCHIVE_SNAPSHOT_METADATA_FILENAME = ".oat-archive-source.json";
 /**
@@ -117,7 +134,14 @@ export declare const S3_ARCHIVE_SYNC_EXCLUDES: string[];
 export interface ArchiveSnapshotMetadata {
     projectName: string;
     snapshotName: string;
+    scope: ProjectScope;
+    sourceRefSha?: string;
 }
+export interface ExactArchiveProjectRoot {
+    canonicalProjectPath: string;
+    projectScope: ProjectScope;
+}
+export declare function assertExactArchiveProjectRoot(options: Pick<ArchiveProjectOnCompletionOptions, 'repoRoot' | 'projectsRoot' | 'projectPath' | 'projectName'>): ExactArchiveProjectRoot;
 /**
  * Build the env passed to every `aws` spawn in this module.
  *

package/dist/commands/project/archive/archive-utils.d.ts.map

@@ -1 +1 @@
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