@oomkapwn/enquire-mcp 3.7.16 → 3.7.19

package/CHANGELOG.md

@@ -2,6 +2,222 @@
 
 All notable changes to this project will be documented here. The format follows [Keep a Changelog](https://keepachangelog.com/en/1.1.0/), and the project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [3.7.19] — 2026-05-20
+
+> **TL;DR:** Round-21 SELF-audit on v3.7.18. Triggered after npm-side discovery (NPM_TOKEN 2FA enforcement) forced a manual `npm publish` for v3.7.18 — which broke the SLSA-3 attestation chain. The recovery exposed how many state-driven failure modes the v3.7.17/18 OIA still missed. 7 cheap fixes, all class-validated against the round-20 audit + the v3.7.18 OIA gap.
+
+**Patch — round-21 self-audit batch.**
+
+### Class γ (non-transactional DB ops) — 4 new sibling instances closed
+
+R-8 (v3.7.18) wrapped `fts5.dropFile` in `db.transaction()`. The round-21 RCA sweep on the same class found **4 more sites with the same shape**:
+
+- **γ1 / `src/fts5.ts:writeMeta`** — multi-key INSERT in `for` loop without txn wrap. Crash mid-loop left meta partially-updated → next open's `bootstrapSchema` saw inconsistent state. Wrapped in `db.transaction()`.
+- **γ2 / `src/embed-db.ts:writeMeta`** — same pattern + same fix.
+- **γ3 / `src/fts5.ts:bootstrapSchema` (R-6 from round-20)** — DROP TABLE chunks + DROP TABLE source_state + CREATE chunks + CREATE source_state + writeMeta ran as separate exec calls. Self-healing on next open via IF EXISTS / IF NOT EXISTS idempotency, but a CRASH between steps left observable mid-state. Wrapped the whole sequence in one transaction. FTS5 virtual table CREATE works inside transactions on SQLite ≥3.7 (better-sqlite3 ships 3.40+).
+- **γ4 / `src/embed-db.ts:bootstrapSchema`** — same as γ3 for embeddings + source_state tables + 5-key meta write.
+
+After this patch, Class γ has been fully swept across both DB modules (5 sites total: dropFile in v3.7.18 + writeMeta×2 + bootstrapSchema×2 here).
+
+### Class θ (false-automation claims) — 3 instances closed
+
+- **θ1 / `check:oia` CI gate (added to `ci.yml`).** v3.7.17 CHANGELOG promised "advisory in v3.7.17; required CI gate in v3.7.18+ once validated for one release cycle." v3.7.18 didn't add it. Round-21 caught the omission. Added as `continue-on-error: true` advisory job (not required — heuristics still have false-positive risk; will graduate to required after one release cycle of green observations).
+- **θ2 / SLSA-3 provenance OIA check (added to `oia-walk.mjs`).** README claims "SLSA-3 build provenance on releases" but v3.7.13 + v3.7.18 (both manually published when CI was unavailable) lack the attestation. New OIA check `SLSA-PROVENANCE-MISSING` queries `npm view @oomkapwn/enquire-mcp@<current-version> dist.attestations` and flags missing provenance. Network-gated (skip on offline / `--skip-network` flag).
+- **θ3 / `publish-docs.yml` hardening.** Pre-3.7.19 the publish workflow ran ONLY `npm run docs:api` — if TypeDoc errored silently or emitted broken output, the deploy still uploaded whatever `docs/api-reference/` contained. Added `npm run lint` + `npm run build` before `docs:api` so the publish path is at least as strict as PR CI's `docs` job.
+
+### Class ι (CI vs Release config drift) — 2 instances closed
+
+- **ι1 / `GH_TOKEN` in `release.yml` `npm test` env.** Pre-3.7.19 release-time tests ran without `GH_TOKEN`, so `tests/github-metadata-invariant.test.ts` silent-skipped (no `gh` auth → early return). PR CI's `test` job has `GH_TOKEN: ${{ github.token }}` since v3.7.13 L4. Aligned. Now release-time tests verify the live repo's About + Topics state matches the invariant.
+- **ι2 / `npm audit` parity.** Pre-3.7.19 release-time audit was `--audit-level=high` only; PR CI uses `moderate` for prod deps + `high` for dev deps. A moderate-severity prod vulnerability appearing between PR-green and tag-push would pass release.yml but fail the next PR — release-time blind spot. Now: same two-step audit as PR CI.
+
+### Class β (auth/permission infra) — operational note
+
+The NPM_TOKEN 2FA enforcement caught between v3.7.16 (worked) and v3.7.17 (failed with `403 Two-factor authentication or granular access token with bypass 2fa enabled is required to publish packages`) is the first instance of this class. Recovery path documented in this CHANGELOG so the next maintainer doesn't re-discover it cold:
+
+- Classic Automation tokens are being phased out by npm.
+- Replacement: **Granular Access Token** with `Read and write` permissions for the `@oomkapwn` scope (or the specific `@oomkapwn/enquire-mcp` package) AND the `Allow to bypass 2FA` checkbox enabled.
+- Without the bypass flag, even a valid token gets `403 Forbidden` on publish.
+- Token rotation cadence: 90 days (npm's max for non-account-2FA-protected tokens).
+
+v3.7.19 ships with the same flow expected: once the maintainer refreshes `NPM_TOKEN` in [GitHub Settings → Secrets → Actions](https://github.com/oomkapwn/enquire-mcp/settings/secrets/actions), the next release auto-publishes via CI (restoring the SLSA-3 chain that v3.7.18 broke).
+
+### Methodology recursion (the meta-finding from round-21)
+
+The v3.7.15 pre-merge RCA rule + v3.7.17 OIA still left 7 findings open at v3.7.18. Root cause: my RCA and OIA only cover classes I've explicitly enumerated. Round-21 added **class γ depth** (R-8 wasn't the last instance — 4 more) and **class θ width** (false-automation claims are broader than F5 / OIA — they include CI gate claims and SLSA provenance claims).
+
+**Pattern:** every audit round teaches me a new sub-class of an already-known class. The growing catalog of OIA checks is the right model — but the RCA-on-patch rule (v3.7.15) and OIA (v3.7.17) need to be RE-RUN with the new check-classes after every audit response, not just on the patch's own diff. v3.7.19 demonstrates this: I re-swept R-8's class γ from scratch and found 4 more siblings, not just inside v3.7.18's diff.
+
+### Stats
+
+- **818 tests** (unchanged — patch is structural + workflow + scripts).
+- **+1 OIA check class**: `SLSA-PROVENANCE-MISSING`. OIA now has **8 check classes**.
+- **+1 CI advisory job**: `oia` (continue-on-error).
+- **Lint / build / smoke / version-consistency / coverage** all pass locally.
+
+### Architectural items still deferred to v3.8.0
+
+(Unchanged from round-20 status — these are multi-day refactors, not single-PR fixes.)
+
+- **R-3** — serve-http feature parity (8 missing flags). Solution: shared `addServeOptions()` helper. Next milestone candidate.
+- **R-7** — watcher → embed-db sync on .md changes.
+- **R-9** — Chunk MCP resource lacks `resolveSafePath`.
+- **R-10** — HNSW + privacy under-return.
+- **K-3** — generalized `readOnlyHint: true` → no destructive operations invariant.
+- **4/5 reranker E2E in CI** with model cache strategy.
+- **T-1 to T-5** — test gaps (`contextPack`, `get_communities` handler E2E, `hyde_search` E2E, `serve-http` cli.test E2E).
+
+## [3.7.18] — 2026-05-19
+
+> **TL;DR:** Round-20 external full audit response — 7th independent external audit since v3.6.0, on the v3.7.11 codebase (6 releases behind current main). Most findings already closed by the v3.7.12 → v3.7.17 cascade (11/18 from §2 of the audit report). This patch closes **5 still-open findings** the auditor identified + **closes the OIA blind spots** v3.7.17 shipped — round-20 found 3 NEW classes my v3.7.17 OIA missed (regex too narrow for list-format subcommand claims, OIA only walked `src/` not `docs/` headers, no shell-script staleness check). All 3 gaps now closed in the OIA script.
+
+**Patch — round-20 stale-fragment cleanup + OIA recursion fix.**
+
+### Stale-fragment fixes (5)
+
+| ID | File | Issue | Fix |
+|----|------|-------|-----|
+| **R-2** | `docs/api.md:5` | "`/ install-model / ... / eval / bench` subcommands" — `bench` is not a CLI subcommand, only `npm run bench:retrieval` | Removed `bench` from the list; added explicit note that benchmarks are an npm script. **OIA gap:** my v3.7.17 OIA matched only `enquire-mcp <cmd>` pattern; missed the list-format `/ A / B / C subcommands.` pattern. Fixed in OIA (new check `CLI-SUBCMD-MISSING-LIST`). |
+| **B-1** | `docs/benchmarks.md:3` | "Last updated: ... (v3.7.0)" — header drifted across 4 latency re-measurements (v3.7.10 / v3.7.13 / v3.7.18) | Rewrote the "Last updated" line to enumerate the actual re-measurement / methodology updates. **OIA gap:** my v3.7.17 OIA only scanned `src/**.ts` first-30-lines for currency claims. Extended to `docs/*.md` first-10-lines (new check `STALE-CURRENCY-CLAIM-DOC`). |
+| **B-3** | `docs/benchmarks.md:275` | "+5.1 NDCG@10 over FS-grep at **4900×** the latency" — but `bench/benchmarks.json` shows 1028 ms / 0.14 ms = **~7,300×** | Recomputed against actual numbers from the JSON. Annotated the recalculation with provenance + the historical 4900× figure for traceability. |
+| **S-C1** | `scripts/post-public-setup.sh` | Bootstrap script from v0.3.x repo-public flip; still required dropped `test (20)` CI gate, didn't require the `docs` gate (added v3.7.10) — running it today would DOWNGRADE branch protection | Replaced contents with a DEPRECATED stub that explains the history + `exit 1` guard. |
+| **S-C2** | `scripts/repo-setup.sh` | One-shot bootstrap from v0.3.1 — hardcoded v0.3.1 description / topics / release; would CLOBBER current marketing surface (gated by `tests/github-metadata-invariant.test.ts`) | Same treatment: DEPRECATED stub + `exit 1` guard. |
+
+### Real correctness fix (1)
+
+- **R-8** — `FtsIndex.dropFile()` was NOT wrapped in `db.transaction()` (`src/fts5.ts:351`). Two independent DELETE statements (`chunks` then `source_state`) could partially apply on crash / SIGKILL / DB-lock contention, leaving `source_state` indicating "file is indexed at mtime X" while `chunks` has no rows — causing the next watcher event to skip re-indexing (state matches) but search to miss the file (no chunks). Sibling of v3.7.10 audit-#10 fix that wrapped `reindexFile` / `reindexPdfFile` / `source_state` updates in `db.transaction()` for the same reason. Fix: wrap both DELETEs in `db.transaction()`. Round-20 external auditor caught this as Class B (Non-transactional DB mutations) — that class has now had three full sweeps (v3.7.10 / v3.7.11 / v3.7.18); R-8 was the last open instance.
+
+### OIA recursion meta-fix (3 new checks)
+
+The v3.7.17 OIA script closed the change-driven vs state-driven methodology gap — but round-20 found 3 stale fragments that v3.7.17's OIA STILL missed. This is the predicted **OIA recursion** (each external audit reveals MORE state-driven classes I didn't enumerate). v3.7.18 closes the round-20 gaps:
+
+1. **`CLI-SUBCMD-MISSING-LIST`** (new) — detects list-format subcommand claims like `\`A\` / \`B\` / \`C\` subcommands.`. Heuristic: line contains the literal word "subcommand" AND ≥2 backticked tokens — each backticked hyphen-token treated as a subcommand claim to verify.
+
+2. **`STALE-CURRENCY-CLAIM-DOC`** (new) — extends `STALE-CURRENCY-CLAIM` from `src/*.ts` to `docs/*.md` first-10-lines (excluding `docs/audits/`). Catches "Last updated: ... (v3.7.0)" type drift in benchmark/comparison/quickstart headers.
+
+3. **`SHELL-SCRIPT-STALE`** (new) — walks `scripts/*.sh` and flags files that reference `v0.X.Y` or `test (20|18|16|14)` AND don't have a DEPRECATED / `exit 1` guard at the top. Catches one-time-bootstrap scripts that drifted out of currency.
+
+After v3.7.18: `npm run check:oia` returns clean across all 7 checks (`STALE-CURRENCY-CLAIM`, `STALE-CURRENCY-CLAIM-DOC`, `WORKFLOW-CLAIM-WITHOUT-EVIDENCE`, `CLI-SUBCMD-MISSING`, `CLI-SUBCMD-MISSING-LIST`, `NPM-SCRIPT-MISSING`, `SHELL-SCRIPT-STALE`, `STALE-DEFAULT-CLAIM`).
+
+### Methodology lesson (the deeper finding)
+
+**OIA recursion is structural, not anecdotal.** v3.7.17 added 5 OIA checks based on round-19's findings. Round-20 found 3 more classes that map to checks v3.7.17 didn't add. The pattern is:
+
+> Each external auditor's methodology samples a different subset of the state-driven failure space. No single OIA pass can enumerate all possible classes a priori. The honest framing: OIA closes the SPECIFIC blind spots prior audits revealed — not "all" state-driven blind spots forever.
+
+This isn't a flaw in OIA; it's the nature of static analysis vs human reading. The mitigation is: every external audit response release should EXTEND OIA with that round's new check classes. The OIA script is a growing catalog of historically-found drift patterns, not a complete one.
+
+**Rule (extended in this release):** when responding to round-N audit, add OIA checks for each NEW class the auditor found that's automatable. v3.7.18 adds 3 checks from round-20.
+
+### Auditor findings VERIFIED as already closed (11)
+
+Per §2 of the round-20 report, these were closed by v3.7.6 → v3.7.17 before round-20 ran:
+
+| # | Finding | Closed in |
+|---|---------|-----------|
+| 1 | README badge v3.6.x → v3.7.x | v3.7.8 positioning calibration |
+| 4 | examples not in npm | v3.7.11 |
+| 5–6 | K-1, K-2 | v3.7.5 (external audit #4) |
+| 12 | release docs gate | v3.7.10 |
+| 13–16 | DQL, FTS txn, deleteNote txn, benchmark sync | v3.7.10 / v3.7.11 |
+| 17 | COMPARISON tools/prompts gate | v3.7.11 |
+| 18 | QUICKSTART version 3.6.1 → 3.7.x | v3.7.12 L2 |
+| 10 | engines >=20 → >=22.13.0 | v3.7.13 H3 |
+| 11 | CodeQL "claim without evidence" | v3.7.17 E (default-setup annotation) |
+| R-14 | CLAUDE.md sprint v3.6.0 / 712+ tests | v3.7.17 B |
+
+### Architectural findings deferred to v3.8.0
+
+Round-20 confirmed (no change from prior audits):
+
+- **R-3** — `serve-http` missing 8 serve-only flags (`--include-pdfs`, `--enable-reranker`, `--reranker-model`, `--reranker-top-n`, `--use-hnsw`, `--hnsw-ef`, `--late-chunk-context`, `--no-hnsw-persist`). Solution: shared `addServeOptions()` + CLI-parity invariant test. Multi-day refactor.
+- **R-7** — watcher doesn't sync embed-db on .md changes. PDF sync closed v3.7.16 P1-5; embed-db requires ML pipeline in watcher process.
+- **R-9** — Chunk MCP resource lacks `resolveSafePath` normalization.
+- **K-3** — generalized `readOnlyHint: true` → no destructive operations invariant.
+- **4/5 reranker E2E** — `ENQUIRE_LOAD_RERANKER_SMOKE=1` opt-in only; not in default CI (model weights ~110 MB).
+- **R-4 / R-15** — `context_pack` soft budget + missing HNSW in ctx.
+- **R-6** — `bootstrapSchema` DROP+CREATE not in single transaction (cross-database migration; needs careful design).
+- **R-10** — HNSW + privacy under-return.
+- **T-1 to T-5** — test coverage gaps (`contextPack`, `get_communities` handler, `hyde_search` E2E, `serve-http` E2E in cli.test, github-metadata no-op).
+- **V-1** — no CI diff between `bench/benchmarks.json` and `docs/benchmarks.md`.
+- **V-2** — PR template doesn't enumerate CI gates.
+- **B-2** — benchmarks methodology section may still have stale narrative latencies (v3.7.13 M11 dropped the duplicate latency column; partial fix).
+- **CHANGELOG 469 KB** — historical noise; open by design.
+
+### Stats
+
+- **818 tests** (unchanged). v3.7.18 is documentation + correctness + tooling; no new code paths to test (R-8 transaction is structural, not test-surfaced).
+- **+3 OIA checks** added: `CLI-SUBCMD-MISSING-LIST`, `STALE-CURRENCY-CLAIM-DOC`, `SHELL-SCRIPT-STALE`.
+- **All 8 required CI gates pass locally.**
+
+### Method note
+
+7 external audit cycles processed in 5 days. The cascade is now self-sustaining: external audits find what internal sweeps miss → OIA gains the new check class → next external audit's blind spots get smaller. The auditor's §0 verdict ("аудит достаточно глубокий для open-source MCP") signals diminishing returns of further static-code-only audits; the outstanding work is in runtime/scale/ML-E2E surfaces (already in v3.8 backlog).
+
+## [3.7.17] — 2026-05-19
+
+> **TL;DR:** Round-19 external audit response — 6th independent external audit since v3.6.0, on the v3.7.5 codebase (4 days behind current main). Most findings were already closed by the v3.7.6 → v3.7.16 cascade; this patch addresses 5 **cheap stale-fragment findings** the auditor caught that my internal class-sweeps had missed (A: `src/index.ts` file-header reading as if 3.6.0-rc.2 is current, B: `CLAUDE.md` title + quality bar still saying "v3.6.0 sprint" + "712+ tests", C: `scripts/check-changelog-coverage.mjs` referencing non-existent `npm run check:coverage-drift`, D: `embeddings.ts` inline comment claiming `rerank-multilingual` is the default since v3.6.1 it's actually `rerank-bge`, E: README CI claim about CodeQL ×2 + Analyze actions — they DO run via GitHub default-setup, but the README didn't say so, looking like a workflow-file claim without evidence). **PLUS a meta-methodology fix:** the new `scripts/oia-walk.mjs` automates 5 state-driven outside-in checks that my change-driven sweeps systematically miss. **New CLAUDE.md rule** mandates `npm run check:oia` before claiming "no open audit items" in any release.
+
+**Patch — round-19 stale-fragment cleanup + Outside-In Audit (OIA) methodology fix.**
+
+### Cheap stale-fragment fixes (5)
+
+| # | Finding | File | Resolution |
+|---|---------|------|-----------|
+| A | `// Slim entry point for enquire-mcp. Version 3.6.0-rc.2 split the previous 3665-line monolith` — reads as currency claim | `src/index.ts:2` | Rewrote header to explicitly mark as History: rc.2 split, with current state separately. Same module description preserved as historical context. |
+| B | `# Project goal — v3.6.0 sprint` + `1. 712+ tests pass` — CLAUDE.md title locked at v3.6.0 sprint despite cascade running to v3.7.17 | `CLAUDE.md:1, 23` | Title now `v3.7.x maintenance + v3.8.0 architectural`; v3.6.0 sprint preserved as historical context section; test count claim re-phrased to "All tests pass (current count: 818+ at v3.7.17)" so future test additions don't require a CLAUDE.md edit. |
+| C | Docstring references `npm run check:coverage-drift` — never existed | `scripts/check-changelog-coverage.mjs:26` | Pointed to the real `npm run check:changelog-coverage`. The reference was a "would-be name" the original author never created. |
+| D | Inline comment near `rerank-multilingual-large` says `(rerank-multilingual default)` — but `DEFAULT_RERANKER_ALIAS = "rerank-bge"` since v3.6.1 CRIT-2 | `src/embeddings.ts:306` | Expanded comment to clarify `rerank-multilingual` is the MULTILINGUAL variant, NOT the project-wide default, and cross-referenced `DEFAULT_RERANKER_ALIAS`. |
+| E | README CI gates row claims `CodeQL ×2 · Analyze actions` but no matching `.github/workflows/*.yml` — auditor flagged as "claim without evidence" | `README.md:185` | Annotated the claim to clarify CodeQL/Analyze run via [GitHub default-setup](https://docs.github.com/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-default-setup-for-code-scanning) (the workflow-file route is one path; default-setup is the other). Both routes produce check-runs visible in `gh pr checks`. |
+
+### Outside-In Audit (OIA) methodology fix
+
+**The meta-finding from round-19:** every external auditor since v3.6.0 has found cheap stale fragments that my internal class-sweeps systematically miss. Root cause: my methodology is **change-driven** (look at what changed, fix the class, verify nearby) while external audits are **state-driven** (read every file as it exists today, verify each claim against reality). These find non-overlapping failure modes.
+
+**My methodology's specific blind spots** (catalogued from the 6 external audit cycles):
+
+1. **Recency bias** — files I haven't edited in N releases fall out of attention. `src/index.ts:2` was never touched in v3.7.x.
+2. **Trust my own ledger** — CHANGELOG says "v3.7.13 H3 bumped engines.node"; I treat as canonical without grep-verifying every file.
+3. **Class-pattern sweeps assume the class is in my mental model** — I sweep TOCTOU, TSDoc drift, hardcoded counts. I didn't enumerate "claim about CI workflows that don't exist" or "CLI subcommand referenced in docs but not in cli.ts" as classes until the auditor named them.
+4. **Pre-merge RCA sweep (v3.7.15 rule) is narrow** — it sweeps the patch's diff for class siblings. Doesn't sweep stale fragments NOT touched by this PR.
+5. **Marketing copy = read-only** — I update gated counts but don't routinely diff hero / tagline / badge against reality.
+6. **File-level vs function-level docstrings** — round-18 catch was function-level; file-level (first 30 lines) almost never re-read.
+7. **Project meta-docs not walked** — I update bodies (e.g. CLAUDE.md "Current phase status") but never re-read titles.
+8. **Utility scripts = black box** — I *run* `scripts/check-*.mjs`; I don't *read* their docstrings.
+9. **Historical vs current inline comments** — tombstones (`// v3.6.1 CRIT-2 — was X`) are legitimate history. Current-claim comments (`(rerank-multilingual default)`) drift silently. I don't distinguish.
+10. **Internal mental model becomes the lens** — I have a model of "current project state" (3.7.17, 818 tests, BGE default). When I look at code, I VALIDATE its conformance to my model. If code drifted but the model didn't, I can't see the drift.
+
+**Solution: `scripts/oia-walk.mjs`** (`npm run check:oia`). Five state-driven walks that automate what external auditors do manually:
+
+1. **STALE-CURRENCY-CLAIM** — scan first 30 lines of every `src/**/*.ts` for currency-claim patterns ("Version X.Y.Z", "rc.N", "alpha.N", "beta.N") not marked as historical (History:, Pre-, was, since, previously). Refined heuristic after a noisy first pass that flagged 21 legitimate tombstones — now only flags claims of currency, not feature-history notes.
+2. **WORKFLOW-CLAIM-WITHOUT-EVIDENCE** — README claims about CI workflows (CodeQL, Analyze) must have either a matching `.github/workflows/*.yml` OR a "default-setup" annotation.
+3. **CLI-SUBCMD-MISSING** — every `enquire-mcp <cmd>` reference in `docs/*.md` (excluding `docs/audits/`) must match a `program.command("<cmd>")` in `src/cli.ts`.
+4. **NPM-SCRIPT-MISSING** — every `npm run <script>` reference in `docs/*.md` and `scripts/*.mjs` docstrings must match `package.json#scripts`.
+5. **STALE-DEFAULT-CLAIM** — heuristic match: inline comments claiming `"X is the default"` are cross-checked against exported `DEFAULT_*` constants in the same file.
+
+**New CLAUDE.md rule (added in this patch):** *"Internal change-driven sweeps miss state-driven failure modes — run OIA before claiming 'no open findings'."* Sits alongside the v3.7.15 "pre-merge RCA sweep" rule. Together they cover both inside-out (RCA on the patch's classes) and outside-in (OIA on the whole repo) audit dimensions.
+
+### Architectural findings still OPEN at v3.7.17 (round-19 audit)
+
+These are documented v3.8+ deferrals — the round-19 auditor found them, and they remain open by design until the next minor:
+
+- **K-3 — Generalized `readOnlyHint: true` → no destructive operations invariant.** Per v3.7.5 CHANGELOG. Closes the K-1 sibling class structurally.
+- **Watcher doesn't sync embed-db on .md changes.** P1-5 (v3.7.16) closed PDF lifecycle in watcher; embed-db sync requires the embedder pipeline in the watcher process (architectural — adds ML deps to the watcher path).
+- **No per-file mutex in watcher.** Parallel chokidar events for the same file race; last-write-wins. Acceptable for now but not for high-frequency vault changes.
+- **CHANGELOG 469 KB** — historical noise. Open by design. Periodic compaction TBD.
+- **`docs/audits/*`** — internal finding notes; some have `fixed` status in the file body that doesn't match overall file framing. Excluded from npm tarball since v3.7.13 L7.
+- **Audit level inconsistency** — PR CI: `npm audit --audit-level=moderate` for prod deps; release.yml: `--audit-level=high`. Architectural choice — should be unified or explicitly documented.
+
+### Stats
+
+- **818 tests** (unchanged; v3.7.17 is a documentation + stale-fragment patch, no new code-paths to test).
+- **+0 docs-consistency invariants** added (the OIA script's STALE-DEFAULT-CLAIM check covers the heuristic; structural invariants are added incrementally when patterns recur).
+- **+1 new gate script**: `npm run check:oia` (advisory in this release; required CI gate scheduled for v3.7.18 once it's been validated in production for one release cycle).
+- All 8 required CI gates pass locally.
+
+### Method
+
+Round-19 closes the most important methodological gap of the v3.6.0 → v3.7.17 cascade: **external audits will always find what internal audits miss UNLESS the internal methodology explicitly includes state-driven walks.** Pre-3.7.17 my methodology was 100% change-driven (class sweeps, TSDoc verification on touched files, pre-merge RCA on the patch diff). Adding `oia-walk.mjs` + the CLAUDE.md rule introduces the missing state-driven dimension. **Net effect: round-20 should find significantly fewer stale fragments — if it still does, the OIA script needs another check pattern added.**
+
 ## [3.7.16] — 2026-05-18
 
 > **TL;DR:** Round-18 external audit response — 5th independent external audit since v3.6.0, run on the v3.7.5 codebase (commit `b9daf39`). The cascade v3.7.6 → v3.7.15 had already closed many findings; this patch addresses the still-open critical + high-impact items. **10 fixes** landed: 5 P1 High (OCR network disclosure + 200-page cap, persistent cache + privacy filters, PDF watcher lifecycle, macOS case-insensitive write bypass), 3 P2 Medium (title-based write ambiguity = silent data corruption, validateNoteProposal privacy check, FTS5 tag LIKE wildcard escape), 2 P3 Low (PDF install hint version, FTS5 reserved-word quoting, issue template ChatGPT). Plus 1 graph-boost path bug (P2-16, C# Notes.md). **+0 tests** (1 test contract change for P3-28). 4 architectural findings deferred to v3.8.0 (serve-http parity, FTS5/embedding chunking parity, search underfill, OCR timeout/concurrency).

package/README.md

@@ -182,7 +182,7 @@ Plus 3 MCP resources (`obsidian://vault/info`, `obsidian://note/{path}`, `obsidi
 | **HTTP transport** | Bearer auth (constant-time SHA-256 + `timingSafeEqual`), per-token rate-limit, strict CORS |
 | **Frontmatter** | `gray-matter` (`js-yaml` safeLoad) — no code execution |
 | **Cache + index files** | chmod 0600, parent dir 0700 |
-| **CI** | **8 required** branch-protection gates (lint · test ×2 [Node 22/24] · smoke · audit · coverage · version-consistency · docs) + **4 advisory** (test-macos · CodeQL ×2 · Analyze actions). Release workflow re-verifies all 8 required passed on tagged SHA before npm publish. _v3.7.10 — `docs` (TypeDoc generation gate) added to required set. v3.7.13 — `engines.node` floor bumped to `>=22.13.0` to match the CI matrix._ |
+| **CI** | **8 required** branch-protection gates (lint · test ×2 [Node 22/24] · smoke · audit · coverage · version-consistency · docs) + **4 advisory** (test-macos via `.github/workflows/ci.yml`; CodeQL ×2 + Analyze actions via [GitHub default-setup](https://docs.github.com/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-default-setup-for-code-scanning) — not workflow files in `.github/workflows/`). Release workflow re-verifies all 8 required passed on tagged SHA before npm publish. _v3.7.10 — `docs` (TypeDoc generation gate) added to required set. v3.7.13 — `engines.node` floor bumped to `>=22.13.0` to match the CI matrix._ |
 | **Coverage** | Lines ≥86% · statements ≥82% · functions ≥75% · branches ≥74% (gated) |
 | **Releases** | npm + GitHub release per tag · semver · **SLSA-3** build provenance |
 | **Stability** | v3.0+ semver-bound — every CLI flag, tool name, MCP resource, prompt, exported symbol is contract |

package/dist/embed-db.d.ts.map

@@ -1 +1 @@
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package/dist/embed-db.js

@@ -207,49 +207,55 @@ export class EmbedDb {
         // "f32" (the only mode v2.16- supported) for backward compatibility.
         const existingQuant = meta.quantization ?? "f32";
         const quantMatch = existingQuant === this.quantization;
-        if (!versionMatch || !rootMatch || !modelMatch || !dimMatch || !quantMatch) {
-            const reason = [];
-            if (!versionMatch)
-                reason.push(`schema_version ${meta.schema_version} → ${SCHEMA_VERSION}`);
-            if (!rootMatch)
-                reason.push(`vault_root ${meta.vault_root} → ${this.vaultRoot}`);
-            if (!modelMatch)
-                reason.push(`model ${meta.model_alias} → ${this.modelAlias}`);
-            if (!dimMatch)
-                reason.push(`dim ${meta.dim} → ${this.dim}`);
-            if (!quantMatch)
-                reason.push(`quantization ${existingQuant} → ${this.quantization}`);
-            process.stderr.write(`enquire: rebuilding embed index (${reason.join("; ")})\n`);
-            db.exec("DROP TABLE IF EXISTS embeddings; DROP TABLE IF EXISTS source_state;");
-        }
-        db.exec(`
-      CREATE TABLE IF NOT EXISTS embeddings (
-        id INTEGER PRIMARY KEY AUTOINCREMENT,
-        rel_path TEXT NOT NULL,
-        chunk_index INTEGER NOT NULL,
-        line_start INTEGER NOT NULL,
-        line_end INTEGER NOT NULL,
-        text_preview TEXT NOT NULL,
-        vector BLOB NOT NULL,
-        kind TEXT NOT NULL DEFAULT 'md',
-        UNIQUE(rel_path, chunk_index)
-      );
-      CREATE INDEX IF NOT EXISTS embeddings_rel_path ON embeddings(rel_path);
-      CREATE TABLE IF NOT EXISTS source_state (
-        rel_path TEXT PRIMARY KEY,
-        mtime_ms INTEGER NOT NULL,
-        n_chunks INTEGER NOT NULL,
-        kind TEXT NOT NULL DEFAULT 'md',
-        indexed_at TEXT NOT NULL
-      );
-    `);
-        this.writeMeta({
-            schema_version: String(SCHEMA_VERSION),
-            vault_root: this.vaultRoot,
-            model_alias: this.modelAlias,
-            dim: String(this.dim),
-            quantization: this.quantization
+        // v3.7.19 γ4 / R-6 — wrap DROP+CREATE+writeMeta in one transaction.
+        // Same rationale as fts5.ts bootstrapSchema fix. Closes the auditor's
+        // round-20 R-6 finding (deferred from that release).
+        const txn = db.transaction(() => {
+            if (!versionMatch || !rootMatch || !modelMatch || !dimMatch || !quantMatch) {
+                const reason = [];
+                if (!versionMatch)
+                    reason.push(`schema_version ${meta.schema_version} → ${SCHEMA_VERSION}`);
+                if (!rootMatch)
+                    reason.push(`vault_root ${meta.vault_root} → ${this.vaultRoot}`);
+                if (!modelMatch)
+                    reason.push(`model ${meta.model_alias} → ${this.modelAlias}`);
+                if (!dimMatch)
+                    reason.push(`dim ${meta.dim} → ${this.dim}`);
+                if (!quantMatch)
+                    reason.push(`quantization ${existingQuant} → ${this.quantization}`);
+                process.stderr.write(`enquire: rebuilding embed index (${reason.join("; ")})\n`);
+                db.exec("DROP TABLE IF EXISTS embeddings; DROP TABLE IF EXISTS source_state;");
+            }
+            db.exec(`
+        CREATE TABLE IF NOT EXISTS embeddings (
+          id INTEGER PRIMARY KEY AUTOINCREMENT,
+          rel_path TEXT NOT NULL,
+          chunk_index INTEGER NOT NULL,
+          line_start INTEGER NOT NULL,
+          line_end INTEGER NOT NULL,
+          text_preview TEXT NOT NULL,
+          vector BLOB NOT NULL,
+          kind TEXT NOT NULL DEFAULT 'md',
+          UNIQUE(rel_path, chunk_index)
+        );
+        CREATE INDEX IF NOT EXISTS embeddings_rel_path ON embeddings(rel_path);
+        CREATE TABLE IF NOT EXISTS source_state (
+          rel_path TEXT PRIMARY KEY,
+          mtime_ms INTEGER NOT NULL,
+          n_chunks INTEGER NOT NULL,
+          kind TEXT NOT NULL DEFAULT 'md',
+          indexed_at TEXT NOT NULL
+        );
+      `);
+            this.writeMeta({
+                schema_version: String(SCHEMA_VERSION),
+                vault_root: this.vaultRoot,
+                model_alias: this.modelAlias,
+                dim: String(this.dim),
+                quantization: this.quantization
+            });
         });
+        txn();
     }
     readMeta() {
         const db = this.requireDb();
@@ -262,8 +268,14 @@ export class EmbedDb {
     writeMeta(kv) {
         const db = this.requireDb();
         const stmt = db.prepare("INSERT OR REPLACE INTO meta (key, value) VALUES (?, ?)");
-        for (const [k, v] of Object.entries(kv))
-            stmt.run(k, v);
+        // v3.7.19 γ2 — same fix as fts5.ts:writeMeta. Crash mid-loop could
+        // leave model/dim/quantization meta partially-updated, triggering
+        // K-1-style "embedder model mismatch" on next open. Class γ.
+        const txn = db.transaction(() => {
+            for (const [k, v] of Object.entries(kv))
+                stmt.run(k, v);
+        });
+        txn();
     }
     requireDb() {
         if (!this.db)

package/dist/embed-db.js.map

@@ -1 +1 @@
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package/dist/embeddings.d.ts.map

@@ -1 +1 @@
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package/dist/embeddings.js

@@ -217,8 +217,12 @@ export const RERANKER_MODELS = Object.freeze({
         maxTokens: 512
     },
     // mxbai-rerank-large-v2 — multilingual, ~280 MB. Higher quality than
-    // the xsmall variant (rerank-multilingual default). Multi-language
-    // benchmark performance is solid; cost is the larger download.
+    // the xsmall `rerank-multilingual` (which is the multilingual variant,
+    // NOT the project-wide default — see `DEFAULT_RERANKER_ALIAS` below; it
+    // was bumped to `rerank-bge` in v3.6.1 CRIT-2 because 4 of 5 catalog
+    // aliases fail at `AutoTokenizer.from_pretrained` due to a
+    // transformers.js compat issue). Multi-language benchmark performance
+    // is solid; cost is the larger download.
     "rerank-multilingual-large": {
         alias: "rerank-multilingual-large",
         hfId: "Xenova/mxbai-rerank-large-v2",

package/dist/embeddings.js.map

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package/dist/fts5.d.ts

@@ -108,7 +108,17 @@ export declare class FtsIndex {
         deleted: string[];
         unchanged: string[];
     };
-    /** Drop a file's chunks + state row. Idempotent. */
+    /** Drop a file's chunks + state row. Idempotent.
+     *
+     * v3.7.18 R-8 — wrapped in `db.transaction()` for atomicity. Pre-3.7.18
+     * the two DELETE statements ran independently; a crash / SIGKILL / DB
+     * lock contention between them could leave `source_state` saying "this
+     * file is indexed at mtime X" while `chunks` had no rows — causing the
+     * next watcher event to skip re-indexing (state matches) but search to
+     * miss the file (no chunks). Sibling of v3.7.10 audit #10 fix that
+     * wrapped `reindexFile` / `reindexPdfFile` / source_state in a txn for
+     * the same reason. Caught by round-20 external audit.
+     */
     dropFile(relPath: string): void;
     /** Re-chunk a single markdown file, replacing its existing chunks atomically.
      *

package/dist/fts5.d.ts.map

@@ -1 +1 @@
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package/dist/fts5.js

@@ -155,44 +155,59 @@ export class FtsIndex {
         const tokenizeMatch = meta.tokenize_mode === undefined || meta.tokenize_mode === this.tokenize;
         const rootMatch = meta.vault_root === undefined || meta.vault_root === this.vaultRoot;
         const versionMatch = meta.schema_version === undefined || meta.schema_version === String(SCHEMA_VERSION);
-        if (!tokenizeMatch || !rootMatch || !versionMatch) {
-            const reason = [];
-            if (!tokenizeMatch)
-                reason.push(`tokenize ${meta.tokenize_mode} → ${this.tokenize}`);
-            if (!rootMatch)
-                reason.push(`vault_root ${meta.vault_root} → ${this.vaultRoot}`);
-            if (!versionMatch)
-                reason.push(`schema_version ${meta.schema_version} → ${SCHEMA_VERSION}`);
-            process.stderr.write(`enquire: rebuilding fts5 index (${reason.join("; ")})\n`);
-            // DROP rather than DELETE — schema may have changed (e.g. v1 → v2 added
-            // the `tags` column). DROP IF EXISTS handles a fresh DB too.
-            db.exec("DROP TABLE IF EXISTS chunks; DROP TABLE IF EXISTS source_state;");
-        }
-        db.exec(`
-      CREATE VIRTUAL TABLE IF NOT EXISTS chunks USING fts5(
-        content,
-        rel_path UNINDEXED,
-        chunk_index UNINDEXED,
-        line_start UNINDEXED,
-        line_end UNINDEXED,
-        tags UNINDEXED,
-        raw_content UNINDEXED,
-        kind UNINDEXED,
-        tokenize='${tokenizeArg}'
-      );
-      CREATE TABLE IF NOT EXISTS source_state (
-        rel_path TEXT PRIMARY KEY,
-        mtime_ms INTEGER NOT NULL,
-        n_chunks INTEGER NOT NULL,
-        kind TEXT NOT NULL DEFAULT 'md',
-        indexed_at TEXT NOT NULL
-      );
-    `);
-        this.writeMeta({
-            schema_version: String(SCHEMA_VERSION),
-            vault_root: this.vaultRoot,
-            tokenize_mode: this.tokenize
+        // v3.7.19 γ3 / R-6 from round-20 — wrap the DROP+CREATE+writeMeta
+        // sequence in a single db.transaction(). Pre-3.7.19 the steps ran
+        // independently; while the existing code IS self-healing on next open
+        // via CREATE IF NOT EXISTS + DROP IF EXISTS + readMeta idempotency,
+        // a transaction makes the failure mode explicit: either the rebuild
+        // completes fully OR it rolls back to the pre-rebuild state with
+        // chunks/source_state still intact. Defensive programming + removes
+        // the auditor's concern. FTS5 virtual table CREATE is supported
+        // inside transactions on SQLite >= 3.7 (better-sqlite3 ships 3.40+).
+        const txn = db.transaction(() => {
+            if (!tokenizeMatch || !rootMatch || !versionMatch) {
+                const reason = [];
+                if (!tokenizeMatch)
+                    reason.push(`tokenize ${meta.tokenize_mode} → ${this.tokenize}`);
+                if (!rootMatch)
+                    reason.push(`vault_root ${meta.vault_root} → ${this.vaultRoot}`);
+                if (!versionMatch)
+                    reason.push(`schema_version ${meta.schema_version} → ${SCHEMA_VERSION}`);
+                process.stderr.write(`enquire: rebuilding fts5 index (${reason.join("; ")})\n`);
+                // DROP rather than DELETE — schema may have changed (e.g. v1 → v2 added
+                // the `tags` column). DROP IF EXISTS handles a fresh DB too.
+                db.exec("DROP TABLE IF EXISTS chunks; DROP TABLE IF EXISTS source_state;");
+            }
+            db.exec(`
+        CREATE VIRTUAL TABLE IF NOT EXISTS chunks USING fts5(
+          content,
+          rel_path UNINDEXED,
+          chunk_index UNINDEXED,
+          line_start UNINDEXED,
+          line_end UNINDEXED,
+          tags UNINDEXED,
+          raw_content UNINDEXED,
+          kind UNINDEXED,
+          tokenize='${tokenizeArg}'
+        );
+        CREATE TABLE IF NOT EXISTS source_state (
+          rel_path TEXT PRIMARY KEY,
+          mtime_ms INTEGER NOT NULL,
+          n_chunks INTEGER NOT NULL,
+          kind TEXT NOT NULL DEFAULT 'md',
+          indexed_at TEXT NOT NULL
+        );
+      `);
+            // writeMeta inside the same transaction — keeps meta + schema
+            // atomically in sync. (writeMeta opens its own nested transaction,
+            // but better-sqlite3 handles nesting via savepoints.)
+            this.writeMeta({
+                schema_version: String(SCHEMA_VERSION),
+                vault_root: this.vaultRoot,
+                tokenize_mode: this.tokenize
+            });
         });
+        txn();
     }
     readMeta() {
         const db = this.requireDb();
@@ -205,8 +220,17 @@ export class FtsIndex {
     writeMeta(kv) {
         const db = this.requireDb();
         const stmt = db.prepare("INSERT OR REPLACE INTO meta (key, value) VALUES (?, ?)");
-        for (const [k, v] of Object.entries(kv))
-            stmt.run(k, v);
+        // v3.7.19 γ1 — wrap multi-key INSERT in db.transaction(). Pre-3.7.19
+        // the loop ran N independent INSERTs; a crash / SIGKILL between them
+        // left meta partially-updated, causing the next open to see e.g.
+        // schema_version bumped but tokenize_mode stale — bootstrapSchema
+        // would then drift on the inconsistent state. Sibling of v3.7.18 R-8
+        // (same class — non-transactional DB ops).
+        const txn = db.transaction(() => {
+            for (const [k, v] of Object.entries(kv))
+                stmt.run(k, v);
+        });
+        txn();
     }
     requireDb() {
         if (!this.db)
@@ -254,11 +278,24 @@ export class FtsIndex {
                 deleted.push(relPath);
         return { added, updated, deleted, unchanged };
     }
-    /** Drop a file's chunks + state row. Idempotent. */
+    /** Drop a file's chunks + state row. Idempotent.
+     *
+     * v3.7.18 R-8 — wrapped in `db.transaction()` for atomicity. Pre-3.7.18
+     * the two DELETE statements ran independently; a crash / SIGKILL / DB
+     * lock contention between them could leave `source_state` saying "this
+     * file is indexed at mtime X" while `chunks` had no rows — causing the
+     * next watcher event to skip re-indexing (state matches) but search to
+     * miss the file (no chunks). Sibling of v3.7.10 audit #10 fix that
+     * wrapped `reindexFile` / `reindexPdfFile` / source_state in a txn for
+     * the same reason. Caught by round-20 external audit.
+     */
     dropFile(relPath) {
         const db = this.requireDb();
-        db.prepare("DELETE FROM chunks WHERE rel_path = ?").run(relPath);
-        db.prepare("DELETE FROM source_state WHERE rel_path = ?").run(relPath);
+        const txn = db.transaction(() => {
+            db.prepare("DELETE FROM chunks WHERE rel_path = ?").run(relPath);
+            db.prepare("DELETE FROM source_state WHERE rel_path = ?").run(relPath);
+        });
+        txn();
     }
     /** Re-chunk a single markdown file, replacing its existing chunks atomically.
      *

package/dist/fts5.js.map

@@ -1 +1 @@
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package/dist/index.d.ts

@@ -7,7 +7,7 @@
  * + `McpServer({version})`) and `src/tool-registry.ts` (used in the
  * `vault-info` resource payload).
  */
-export declare const VERSION = "3.7.16";
+export declare const VERSION = "3.7.19";
 export { main } from "./cli.js";
 export { buildEmbedText, buildMcpServer, formatReadyBanner, prepareServerDeps, type ServeOptions, type ServerDeps, startServer } from "./server.js";
 export { parsePositiveInt, parseQuantizationMode } from "./tool-registry.js";

package/dist/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";AA4BA;;;;;;;GAOG;AACH,eAAO,MAAM,OAAO,WAAW,CAAC;AAUhC,OAAO,EAAE,IAAI,EAAE,MAAM,UAAU,CAAC;AAChC,OAAO,EACL,cAAc,EACd,cAAc,EACd,iBAAiB,EACjB,iBAAiB,EACjB,KAAK,YAAY,EACjB,KAAK,UAAU,EACf,WAAW,EACZ,MAAM,aAAa,CAAC;AACrB,OAAO,EAAE,gBAAgB,EAAE,qBAAqB,EAAE,MAAM,oBAAoB,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";AAoCA;;;;;;;GAOG;AACH,eAAO,MAAM,OAAO,WAAW,CAAC;AAUhC,OAAO,EAAE,IAAI,EAAE,MAAM,UAAU,CAAC;AAChC,OAAO,EACL,cAAc,EACd,cAAc,EACd,iBAAiB,EACjB,iBAAiB,EACjB,KAAK,YAAY,EACjB,KAAK,UAAU,EACf,WAAW,EACZ,MAAM,aAAa,CAAC;AACrB,OAAO,EAAE,gBAAgB,EAAE,qBAAqB,EAAE,MAAM,oBAAoB,CAAC"}

package/dist/index.js

@@ -1,6 +1,14 @@
 #!/usr/bin/env node
-// Slim entry point for enquire-mcp. Version 3.6.0-rc.2 split the previous
-// 3665-line monolith into domain modules:
+// Slim entry point for enquire-mcp. The current `VERSION` constant below
+// is the authoritative version (see `scripts/check-version-consistency.mjs`).
+//
+// History: v3.6.0-rc.2 split the previous 3665-line monolith into the
+// domain modules listed below. v3.7.x continued the consolidation. The
+// file-header comment used to read as if rc.2 was current — round-19
+// audit (v3.7.17) caught this as the "tombstone vs current-claim"
+// stale-comment class. Now reads as historical context (clearer.)
+//
+// Domain modules:
 //   - cli.ts            : `main()` + commander program definition (CLI parsing).
 //   - server.ts         : ServeOptions / ServerDeps / prepareServerDeps / buildMcpServer /
 //                         startServer / formatReadyBanner / buildEmbedText / sync* fns.
@@ -32,7 +40,7 @@ import { main } from "./cli.js";
  * + `McpServer({version})`) and `src/tool-registry.ts` (used in the
  * `vault-info` resource payload).
  */
-export const VERSION = "3.7.16";
+export const VERSION = "3.7.19";
 // Re-exports — preserve the v3.5.x public surface so http-transport.ts and
 // tests don't need to know about the new module layout. The set below
 // exactly matches the v3.5.x `export` declarations: `main`,

package/dist/index.js.map

@@ -1 +1 @@
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package/docs/api.md

@@ -2,7 +2,7 @@
 
 **enquire is the most advanced Obsidian MCP — a long-term memory layer for AI agents, built on your Obsidian vault.** Open-source, MCP-native, vendor-neutral persistence: agents (Claude Code / Claude Desktop / Cursor / ChatGPT / Codex / OpenClaw / any MCP client) get durable, queryable recall across sessions, models, and providers — your knowledge lives in plain markdown you own, not a vendor cloud. 44 MCP tools (33 always-on read + 4 opt-in read + 7 opt-in write); the 4 opt-ins are: 1 via `--persistent-index` + `--diagnostic-search-tools` (`obsidian_full_text_search` — needs BOTH flags: persistent-index for the FTS5 index, diagnostic-search-tools to surface it as a single-ranker tool alongside the hybrid default `obsidian_search`) + 3 via `--diagnostic-search-tools` (the single-ranker `obsidian_search_text` / `obsidian_semantic_search` / `obsidian_embeddings_search` — gated by default in v2.0+ since `obsidian_search` auto-detects + fuses signals). 2 + 1 opt-in MCP resources, 19 MCP prompts. **v3.1.0+ adds `obsidian_hyde_search`** (HyDE-augmented retrieval, Gao et al 2023; agent supplies a synthetic answer, server embeds it for retrieval) plus the `vault_research` (sub-question decomposition) and `vault_synthesis_page` (Karpathy LLM-Wiki synthesis loop) prompts. v2.6.0+ also speaks Streamable HTTP via `serve-http` (bearer auth + rate-limit + CORS). v2.7.0+ indexes PDFs as a separate read tool surface; **v2.8.0+ blends PDF chunks into `obsidian_search` hybrid retrieval** with `--include-pdfs` — every hit carries a `kind: "md" | "pdf"` flag and PDF snippets include `[page: N]` markers for citation. **v2.9.0+ adds BGE cross-encoder reranking** on top of RRF with `--enable-reranker` — typical +5-10 NDCG@10 retrieval-quality boost. **v2.10.0+ adds Tesseract OCR for image-only / scanned PDFs** via `obsidian_ocr_pdf` — completes the PDF retrieval story.
 
-> **Channels:** stable v3.7.x (`@latest` on npm) ships 44 tools including `obsidian_search` (hybrid BM25 + TF-IDF + ML embeddings, RRF-fused) with optional BGE cross-encoder reranking, `obsidian_embeddings_search`, `obsidian_hyde_search`, plus the `install-model` / `build-embeddings` / `clear-embeddings` / `setup` / `doctor` / `eval` / `bench` subcommands. The `@rc` dist-tag carries the most recent release candidate. This document covers the **v3.7.x stable** surface — see [CHANGELOG.md](../CHANGELOG.md) for the v3.7.0 quality batch that closed the post-v3.6.4 audit cycle (K-1 class structurally enforced at 4 levels, ~20× faster search hot path via peek caching, per-file branch coverage floors, GitHub repo metadata invariant).
+> **Channels:** stable v3.7.x (`@latest` on npm) ships 44 tools including `obsidian_search` (hybrid BM25 + TF-IDF + ML embeddings, RRF-fused) with optional BGE cross-encoder reranking, `obsidian_embeddings_search`, `obsidian_hyde_search`, plus the `install-model` / `build-embeddings` / `clear-embeddings` / `setup` / `doctor` / `eval` subcommands. The `@rc` dist-tag carries the most recent release candidate. Benchmarks live behind `npm run bench:retrieval` (not a CLI subcommand). This document covers the **v3.7.x stable** surface — see [CHANGELOG.md](../CHANGELOG.md) for the v3.7.0 quality batch that closed the post-v3.6.4 audit cycle (K-1 class structurally enforced at 4 levels, ~20× faster search hot path via peek caching, per-file branch coverage floors, GitHub repo metadata invariant).
 
 > Versioned dynamically — see [`CHANGELOG.md`](../CHANGELOG.md) for the current release.
 

package/docs/benchmarks.md

@@ -1,6 +1,6 @@
 # Benchmarks — enquire-mcp retrieval quality
 
-**Last updated:** 2026-05-15 (v3.7.0) · **Generated by:** `npm run bench:retrieval`
+**Last updated:** 2026-05-15 (latency numbers re-measured under v3.7.10 against `bench/benchmarks.json`; methodology table updated v3.7.13 M11 to drop the duplicate latency column; ratio claim recomputed v3.7.18 B-3 against current TL;DR figures). Quality metrics (MRR / NDCG@10 / Recall@10) are deterministic and stable across the v3.7.x cascade. · **Generated by:** `npm run bench:retrieval`
 
 This page reports retrieval-quality numbers for every layer of the enquire-mcp
 hybrid stack against a deterministic synthetic vault. **Every metric below is
@@ -272,10 +272,14 @@ at that layer:
 
 Note that BM25 alone is *worse* than FS-grep here because we collapse
 chunks to one hit per note — but pair BM25 with TF-IDF + embeddings via
-RRF + reranker and you get **+5.1 NDCG@10 over FS-grep at 4900× the
-latency**. For an interactive LLM agent on a single-digit-note retrieval
-task, that latency is invisible; the quality improvement is the thing that
-moves an agent from "useful for grep" to "reliably finds what I mean".
+RRF + reranker and you get **+5.1 NDCG@10 over FS-grep at ~7,300× the
+latency** (1028 ms Hybrid+reranker vs 0.14 ms FS-grep, both from
+`bench/benchmarks.json`; v3.7.18 B-3 recomputed against actual numbers —
+pre-v3.7.18 this claimed "4900×" against an earlier rev of the latency
+column). For an interactive LLM agent on a single-digit-note retrieval
+task, that absolute latency (~1 second) is still invisible; the quality
+improvement is the thing that moves an agent from "useful for grep" to
+"reliably finds what I mean".
 
 ### Per-category breakdown
 

package/package.json

@@ -1,7 +1,7 @@
 {
   "$schema": "https://json.schemastore.org/package.json",
   "name": "@oomkapwn/enquire-mcp",
-  "version": "3.7.16",
+  "version": "3.7.19",
   "description": "The most advanced Obsidian MCP — long-term memory for AI agents. Hybrid retrieval (BM25 + TF-IDF + multilingual ML embeddings, RRF-fused) with BGE cross-encoder reranking, HNSW + int8 quantization, late-chunking, HyDE + sub-question decomposition, agentic RAG, PDFs (with OCR), standalone Bases (.base query execution — no Obsidian needed), GraphRAG-light (Louvain wikilink community detection), wikilinks, backlinks, Dataview, frontmatter, canvas. Open-source long-term memory / second brain for Claude Code, Claude Desktop, Cursor, ChatGPT custom GPT, Codex, OpenClaw, and any MCP client. 44 tools, 19 MCP prompts, BGE cross-encoder reranker verified end-to-end (+4 aliases in catalog, transformers.js bump pending), 818 tests, SLSA-3, semver-bound, MIT.",
   "type": "module",
   "bin": {
@@ -72,6 +72,7 @@
     "test:coverage": "vitest run --coverage",
     "check:changelog-coverage": "node scripts/check-changelog-coverage.mjs",
     "check:per-file-coverage": "node scripts/check-per-file-coverage.mjs",
+    "check:oia": "node scripts/oia-walk.mjs",
     "lint": "biome check",
     "lint:fix": "biome check --write",
     "format": "biome format --write",