npm - @oomkapwn/enquire-mcp - Versions diffs - 3.7.16 → 3.7.18 - Mend

@oomkapwn/enquire-mcp 3.7.16 → 3.7.18

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package/CHANGELOG.md CHANGED Viewed

@@ -2,6 +2,158 @@
 All notable changes to this project will be documented here. The format follows [Keep a Changelog](https://keepachangelog.com/en/1.1.0/), and the project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+## [3.7.18] — 2026-05-19
+> **TL;DR:** Round-20 external full audit response — 7th independent external audit since v3.6.0, on the v3.7.11 codebase (6 releases behind current main). Most findings already closed by the v3.7.12 → v3.7.17 cascade (11/18 from §2 of the audit report). This patch closes **5 still-open findings** the auditor identified + **closes the OIA blind spots** v3.7.17 shipped — round-20 found 3 NEW classes my v3.7.17 OIA missed (regex too narrow for list-format subcommand claims, OIA only walked `src/` not `docs/` headers, no shell-script staleness check). All 3 gaps now closed in the OIA script.
+**Patch — round-20 stale-fragment cleanup + OIA recursion fix.**
+### Stale-fragment fixes (5)
+| ID | File | Issue | Fix |
+|----|------|-------|-----|
+| **R-2** | `docs/api.md:5` | "`/ install-model / ... / eval / bench` subcommands" — `bench` is not a CLI subcommand, only `npm run bench:retrieval` | Removed `bench` from the list; added explicit note that benchmarks are an npm script. **OIA gap:** my v3.7.17 OIA matched only `enquire-mcp <cmd>` pattern; missed the list-format `/ A / B / C subcommands.` pattern. Fixed in OIA (new check `CLI-SUBCMD-MISSING-LIST`). |
+| **B-1** | `docs/benchmarks.md:3` | "Last updated: ... (v3.7.0)" — header drifted across 4 latency re-measurements (v3.7.10 / v3.7.13 / v3.7.18) | Rewrote the "Last updated" line to enumerate the actual re-measurement / methodology updates. **OIA gap:** my v3.7.17 OIA only scanned `src/**.ts` first-30-lines for currency claims. Extended to `docs/*.md` first-10-lines (new check `STALE-CURRENCY-CLAIM-DOC`). |
+| **B-3** | `docs/benchmarks.md:275` | "+5.1 NDCG@10 over FS-grep at **4900×** the latency" — but `bench/benchmarks.json` shows 1028 ms / 0.14 ms = **~7,300×** | Recomputed against actual numbers from the JSON. Annotated the recalculation with provenance + the historical 4900× figure for traceability. |
+| **S-C1** | `scripts/post-public-setup.sh` | Bootstrap script from v0.3.x repo-public flip; still required dropped `test (20)` CI gate, didn't require the `docs` gate (added v3.7.10) — running it today would DOWNGRADE branch protection | Replaced contents with a DEPRECATED stub that explains the history + `exit 1` guard. |
+| **S-C2** | `scripts/repo-setup.sh` | One-shot bootstrap from v0.3.1 — hardcoded v0.3.1 description / topics / release; would CLOBBER current marketing surface (gated by `tests/github-metadata-invariant.test.ts`) | Same treatment: DEPRECATED stub + `exit 1` guard. |
+### Real correctness fix (1)
+- **R-8** — `FtsIndex.dropFile()` was NOT wrapped in `db.transaction()` (`src/fts5.ts:351`). Two independent DELETE statements (`chunks` then `source_state`) could partially apply on crash / SIGKILL / DB-lock contention, leaving `source_state` indicating "file is indexed at mtime X" while `chunks` has no rows — causing the next watcher event to skip re-indexing (state matches) but search to miss the file (no chunks). Sibling of v3.7.10 audit-#10 fix that wrapped `reindexFile` / `reindexPdfFile` / `source_state` updates in `db.transaction()` for the same reason. Fix: wrap both DELETEs in `db.transaction()`. Round-20 external auditor caught this as Class B (Non-transactional DB mutations) — that class has now had three full sweeps (v3.7.10 / v3.7.11 / v3.7.18); R-8 was the last open instance.
+### OIA recursion meta-fix (3 new checks)
+The v3.7.17 OIA script closed the change-driven vs state-driven methodology gap — but round-20 found 3 stale fragments that v3.7.17's OIA STILL missed. This is the predicted **OIA recursion** (each external audit reveals MORE state-driven classes I didn't enumerate). v3.7.18 closes the round-20 gaps:
+1. **`CLI-SUBCMD-MISSING-LIST`** (new) — detects list-format subcommand claims like `\`A\` / \`B\` / \`C\` subcommands.`. Heuristic: line contains the literal word "subcommand" AND ≥2 backticked tokens — each backticked hyphen-token treated as a subcommand claim to verify.
+2. **`STALE-CURRENCY-CLAIM-DOC`** (new) — extends `STALE-CURRENCY-CLAIM` from `src/*.ts` to `docs/*.md` first-10-lines (excluding `docs/audits/`). Catches "Last updated: ... (v3.7.0)" type drift in benchmark/comparison/quickstart headers.
+3. **`SHELL-SCRIPT-STALE`** (new) — walks `scripts/*.sh` and flags files that reference `v0.X.Y` or `test (20|18|16|14)` AND don't have a DEPRECATED / `exit 1` guard at the top. Catches one-time-bootstrap scripts that drifted out of currency.
+After v3.7.18: `npm run check:oia` returns clean across all 7 checks (`STALE-CURRENCY-CLAIM`, `STALE-CURRENCY-CLAIM-DOC`, `WORKFLOW-CLAIM-WITHOUT-EVIDENCE`, `CLI-SUBCMD-MISSING`, `CLI-SUBCMD-MISSING-LIST`, `NPM-SCRIPT-MISSING`, `SHELL-SCRIPT-STALE`, `STALE-DEFAULT-CLAIM`).
+### Methodology lesson (the deeper finding)
+**OIA recursion is structural, not anecdotal.** v3.7.17 added 5 OIA checks based on round-19's findings. Round-20 found 3 more classes that map to checks v3.7.17 didn't add. The pattern is:
+> Each external auditor's methodology samples a different subset of the state-driven failure space. No single OIA pass can enumerate all possible classes a priori. The honest framing: OIA closes the SPECIFIC blind spots prior audits revealed — not "all" state-driven blind spots forever.
+This isn't a flaw in OIA; it's the nature of static analysis vs human reading. The mitigation is: every external audit response release should EXTEND OIA with that round's new check classes. The OIA script is a growing catalog of historically-found drift patterns, not a complete one.
+**Rule (extended in this release):** when responding to round-N audit, add OIA checks for each NEW class the auditor found that's automatable. v3.7.18 adds 3 checks from round-20.
+### Auditor findings VERIFIED as already closed (11)
+Per §2 of the round-20 report, these were closed by v3.7.6 → v3.7.17 before round-20 ran:
+| # | Finding | Closed in |
+|---|---------|-----------|
+| 1 | README badge v3.6.x → v3.7.x | v3.7.8 positioning calibration |
+| 4 | examples not in npm | v3.7.11 |
+| 5–6 | K-1, K-2 | v3.7.5 (external audit #4) |
+| 12 | release docs gate | v3.7.10 |
+| 13–16 | DQL, FTS txn, deleteNote txn, benchmark sync | v3.7.10 / v3.7.11 |
+| 17 | COMPARISON tools/prompts gate | v3.7.11 |
+| 18 | QUICKSTART version 3.6.1 → 3.7.x | v3.7.12 L2 |
+| 10 | engines >=20 → >=22.13.0 | v3.7.13 H3 |
+| 11 | CodeQL "claim without evidence" | v3.7.17 E (default-setup annotation) |
+| R-14 | CLAUDE.md sprint v3.6.0 / 712+ tests | v3.7.17 B |
+### Architectural findings deferred to v3.8.0
+Round-20 confirmed (no change from prior audits):
+- **R-3** — `serve-http` missing 8 serve-only flags (`--include-pdfs`, `--enable-reranker`, `--reranker-model`, `--reranker-top-n`, `--use-hnsw`, `--hnsw-ef`, `--late-chunk-context`, `--no-hnsw-persist`). Solution: shared `addServeOptions()` + CLI-parity invariant test. Multi-day refactor.
+- **R-7** — watcher doesn't sync embed-db on .md changes. PDF sync closed v3.7.16 P1-5; embed-db requires ML pipeline in watcher process.
+- **R-9** — Chunk MCP resource lacks `resolveSafePath` normalization.
+- **K-3** — generalized `readOnlyHint: true` → no destructive operations invariant.
+- **4/5 reranker E2E** — `ENQUIRE_LOAD_RERANKER_SMOKE=1` opt-in only; not in default CI (model weights ~110 MB).
+- **R-4 / R-15** — `context_pack` soft budget + missing HNSW in ctx.
+- **R-6** — `bootstrapSchema` DROP+CREATE not in single transaction (cross-database migration; needs careful design).
+- **R-10** — HNSW + privacy under-return.
+- **T-1 to T-5** — test coverage gaps (`contextPack`, `get_communities` handler, `hyde_search` E2E, `serve-http` E2E in cli.test, github-metadata no-op).
+- **V-1** — no CI diff between `bench/benchmarks.json` and `docs/benchmarks.md`.
+- **V-2** — PR template doesn't enumerate CI gates.
+- **B-2** — benchmarks methodology section may still have stale narrative latencies (v3.7.13 M11 dropped the duplicate latency column; partial fix).
+- **CHANGELOG 469 KB** — historical noise; open by design.
+### Stats
+- **818 tests** (unchanged). v3.7.18 is documentation + correctness + tooling; no new code paths to test (R-8 transaction is structural, not test-surfaced).
+- **+3 OIA checks** added: `CLI-SUBCMD-MISSING-LIST`, `STALE-CURRENCY-CLAIM-DOC`, `SHELL-SCRIPT-STALE`.
+- **All 8 required CI gates pass locally.**
+### Method note
+7 external audit cycles processed in 5 days. The cascade is now self-sustaining: external audits find what internal sweeps miss → OIA gains the new check class → next external audit's blind spots get smaller. The auditor's §0 verdict ("аудит достаточно глубокий для open-source MCP") signals diminishing returns of further static-code-only audits; the outstanding work is in runtime/scale/ML-E2E surfaces (already in v3.8 backlog).
+## [3.7.17] — 2026-05-19
+> **TL;DR:** Round-19 external audit response — 6th independent external audit since v3.6.0, on the v3.7.5 codebase (4 days behind current main). Most findings were already closed by the v3.7.6 → v3.7.16 cascade; this patch addresses 5 **cheap stale-fragment findings** the auditor caught that my internal class-sweeps had missed (A: `src/index.ts` file-header reading as if 3.6.0-rc.2 is current, B: `CLAUDE.md` title + quality bar still saying "v3.6.0 sprint" + "712+ tests", C: `scripts/check-changelog-coverage.mjs` referencing non-existent `npm run check:coverage-drift`, D: `embeddings.ts` inline comment claiming `rerank-multilingual` is the default since v3.6.1 it's actually `rerank-bge`, E: README CI claim about CodeQL ×2 + Analyze actions — they DO run via GitHub default-setup, but the README didn't say so, looking like a workflow-file claim without evidence). **PLUS a meta-methodology fix:** the new `scripts/oia-walk.mjs` automates 5 state-driven outside-in checks that my change-driven sweeps systematically miss. **New CLAUDE.md rule** mandates `npm run check:oia` before claiming "no open audit items" in any release.
+**Patch — round-19 stale-fragment cleanup + Outside-In Audit (OIA) methodology fix.**
+### Cheap stale-fragment fixes (5)
+| # | Finding | File | Resolution |
+|---|---------|------|-----------|
+| A | `// Slim entry point for enquire-mcp. Version 3.6.0-rc.2 split the previous 3665-line monolith` — reads as currency claim | `src/index.ts:2` | Rewrote header to explicitly mark as History: rc.2 split, with current state separately. Same module description preserved as historical context. |
+| B | `# Project goal — v3.6.0 sprint` + `1. 712+ tests pass` — CLAUDE.md title locked at v3.6.0 sprint despite cascade running to v3.7.17 | `CLAUDE.md:1, 23` | Title now `v3.7.x maintenance + v3.8.0 architectural`; v3.6.0 sprint preserved as historical context section; test count claim re-phrased to "All tests pass (current count: 818+ at v3.7.17)" so future test additions don't require a CLAUDE.md edit. |
+| C | Docstring references `npm run check:coverage-drift` — never existed | `scripts/check-changelog-coverage.mjs:26` | Pointed to the real `npm run check:changelog-coverage`. The reference was a "would-be name" the original author never created. |
+| D | Inline comment near `rerank-multilingual-large` says `(rerank-multilingual default)` — but `DEFAULT_RERANKER_ALIAS = "rerank-bge"` since v3.6.1 CRIT-2 | `src/embeddings.ts:306` | Expanded comment to clarify `rerank-multilingual` is the MULTILINGUAL variant, NOT the project-wide default, and cross-referenced `DEFAULT_RERANKER_ALIAS`. |
+| E | README CI gates row claims `CodeQL ×2 · Analyze actions` but no matching `.github/workflows/*.yml` — auditor flagged as "claim without evidence" | `README.md:185` | Annotated the claim to clarify CodeQL/Analyze run via [GitHub default-setup](https://docs.github.com/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-default-setup-for-code-scanning) (the workflow-file route is one path; default-setup is the other). Both routes produce check-runs visible in `gh pr checks`. |
+### Outside-In Audit (OIA) methodology fix
+**The meta-finding from round-19:** every external auditor since v3.6.0 has found cheap stale fragments that my internal class-sweeps systematically miss. Root cause: my methodology is **change-driven** (look at what changed, fix the class, verify nearby) while external audits are **state-driven** (read every file as it exists today, verify each claim against reality). These find non-overlapping failure modes.
+**My methodology's specific blind spots** (catalogued from the 6 external audit cycles):
+1. **Recency bias** — files I haven't edited in N releases fall out of attention. `src/index.ts:2` was never touched in v3.7.x.
+2. **Trust my own ledger** — CHANGELOG says "v3.7.13 H3 bumped engines.node"; I treat as canonical without grep-verifying every file.
+3. **Class-pattern sweeps assume the class is in my mental model** — I sweep TOCTOU, TSDoc drift, hardcoded counts. I didn't enumerate "claim about CI workflows that don't exist" or "CLI subcommand referenced in docs but not in cli.ts" as classes until the auditor named them.
+4. **Pre-merge RCA sweep (v3.7.15 rule) is narrow** — it sweeps the patch's diff for class siblings. Doesn't sweep stale fragments NOT touched by this PR.
+5. **Marketing copy = read-only** — I update gated counts but don't routinely diff hero / tagline / badge against reality.
+6. **File-level vs function-level docstrings** — round-18 catch was function-level; file-level (first 30 lines) almost never re-read.
+7. **Project meta-docs not walked** — I update bodies (e.g. CLAUDE.md "Current phase status") but never re-read titles.
+8. **Utility scripts = black box** — I *run* `scripts/check-*.mjs`; I don't *read* their docstrings.
+9. **Historical vs current inline comments** — tombstones (`// v3.6.1 CRIT-2 — was X`) are legitimate history. Current-claim comments (`(rerank-multilingual default)`) drift silently. I don't distinguish.
+10. **Internal mental model becomes the lens** — I have a model of "current project state" (3.7.17, 818 tests, BGE default). When I look at code, I VALIDATE its conformance to my model. If code drifted but the model didn't, I can't see the drift.
+**Solution: `scripts/oia-walk.mjs`** (`npm run check:oia`). Five state-driven walks that automate what external auditors do manually:
+1. **STALE-CURRENCY-CLAIM** — scan first 30 lines of every `src/**/*.ts` for currency-claim patterns ("Version X.Y.Z", "rc.N", "alpha.N", "beta.N") not marked as historical (History:, Pre-, was, since, previously). Refined heuristic after a noisy first pass that flagged 21 legitimate tombstones — now only flags claims of currency, not feature-history notes.
+2. **WORKFLOW-CLAIM-WITHOUT-EVIDENCE** — README claims about CI workflows (CodeQL, Analyze) must have either a matching `.github/workflows/*.yml` OR a "default-setup" annotation.
+3. **CLI-SUBCMD-MISSING** — every `enquire-mcp <cmd>` reference in `docs/*.md` (excluding `docs/audits/`) must match a `program.command("<cmd>")` in `src/cli.ts`.
+4. **NPM-SCRIPT-MISSING** — every `npm run <script>` reference in `docs/*.md` and `scripts/*.mjs` docstrings must match `package.json#scripts`.
+5. **STALE-DEFAULT-CLAIM** — heuristic match: inline comments claiming `"X is the default"` are cross-checked against exported `DEFAULT_*` constants in the same file.
+**New CLAUDE.md rule (added in this patch):** *"Internal change-driven sweeps miss state-driven failure modes — run OIA before claiming 'no open findings'."* Sits alongside the v3.7.15 "pre-merge RCA sweep" rule. Together they cover both inside-out (RCA on the patch's classes) and outside-in (OIA on the whole repo) audit dimensions.
+### Architectural findings still OPEN at v3.7.17 (round-19 audit)
+These are documented v3.8+ deferrals — the round-19 auditor found them, and they remain open by design until the next minor:
+- **K-3 — Generalized `readOnlyHint: true` → no destructive operations invariant.** Per v3.7.5 CHANGELOG. Closes the K-1 sibling class structurally.
+- **Watcher doesn't sync embed-db on .md changes.** P1-5 (v3.7.16) closed PDF lifecycle in watcher; embed-db sync requires the embedder pipeline in the watcher process (architectural — adds ML deps to the watcher path).
+- **No per-file mutex in watcher.** Parallel chokidar events for the same file race; last-write-wins. Acceptable for now but not for high-frequency vault changes.
+- **CHANGELOG 469 KB** — historical noise. Open by design. Periodic compaction TBD.
+- **`docs/audits/*`** — internal finding notes; some have `fixed` status in the file body that doesn't match overall file framing. Excluded from npm tarball since v3.7.13 L7.
+- **Audit level inconsistency** — PR CI: `npm audit --audit-level=moderate` for prod deps; release.yml: `--audit-level=high`. Architectural choice — should be unified or explicitly documented.
+### Stats
+- **818 tests** (unchanged; v3.7.17 is a documentation + stale-fragment patch, no new code-paths to test).
+- **+0 docs-consistency invariants** added (the OIA script's STALE-DEFAULT-CLAIM check covers the heuristic; structural invariants are added incrementally when patterns recur).
+- **+1 new gate script**: `npm run check:oia` (advisory in this release; required CI gate scheduled for v3.7.18 once it's been validated in production for one release cycle).
+- All 8 required CI gates pass locally.
+### Method
+Round-19 closes the most important methodological gap of the v3.6.0 → v3.7.17 cascade: **external audits will always find what internal audits miss UNLESS the internal methodology explicitly includes state-driven walks.** Pre-3.7.17 my methodology was 100% change-driven (class sweeps, TSDoc verification on touched files, pre-merge RCA on the patch diff). Adding `oia-walk.mjs` + the CLAUDE.md rule introduces the missing state-driven dimension. **Net effect: round-20 should find significantly fewer stale fragments — if it still does, the OIA script needs another check pattern added.**
 ## [3.7.16] — 2026-05-18
 > **TL;DR:** Round-18 external audit response — 5th independent external audit since v3.6.0, run on the v3.7.5 codebase (commit `b9daf39`). The cascade v3.7.6 → v3.7.15 had already closed many findings; this patch addresses the still-open critical + high-impact items. **10 fixes** landed: 5 P1 High (OCR network disclosure + 200-page cap, persistent cache + privacy filters, PDF watcher lifecycle, macOS case-insensitive write bypass), 3 P2 Medium (title-based write ambiguity = silent data corruption, validateNoteProposal privacy check, FTS5 tag LIKE wildcard escape), 2 P3 Low (PDF install hint version, FTS5 reserved-word quoting, issue template ChatGPT). Plus 1 graph-boost path bug (P2-16, C# Notes.md). **+0 tests** (1 test contract change for P3-28). 4 architectural findings deferred to v3.8.0 (serve-http parity, FTS5/embedding chunking parity, search underfill, OCR timeout/concurrency).

package/README.md CHANGED Viewed

@@ -182,7 +182,7 @@ Plus 3 MCP resources (`obsidian://vault/info`, `obsidian://note/{path}`, `obsidi
 | **HTTP transport** | Bearer auth (constant-time SHA-256 + `timingSafeEqual`), per-token rate-limit, strict CORS |
 | **Frontmatter** | `gray-matter` (`js-yaml` safeLoad) — no code execution |
 | **Cache + index files** | chmod 0600, parent dir 0700 |
-| **CI** | **8 required** branch-protection gates (lint · test ×2 [Node 22/24] · smoke · audit · coverage · version-consistency · docs) + **4 advisory** (test-macos · CodeQL ×2 · Analyze actions). Release workflow re-verifies all 8 required passed on tagged SHA before npm publish. _v3.7.10 — `docs` (TypeDoc generation gate) added to required set. v3.7.13 — `engines.node` floor bumped to `>=22.13.0` to match the CI matrix._ |
+| **CI** | **8 required** branch-protection gates (lint · test ×2 [Node 22/24] · smoke · audit · coverage · version-consistency · docs) + **4 advisory** (test-macos via `.github/workflows/ci.yml`; CodeQL ×2 + Analyze actions via [GitHub default-setup](https://docs.github.com/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-default-setup-for-code-scanning) — not workflow files in `.github/workflows/`). Release workflow re-verifies all 8 required passed on tagged SHA before npm publish. _v3.7.10 — `docs` (TypeDoc generation gate) added to required set. v3.7.13 — `engines.node` floor bumped to `>=22.13.0` to match the CI matrix._ |
 | **Coverage** | Lines ≥86% · statements ≥82% · functions ≥75% · branches ≥74% (gated) |
 | **Releases** | npm + GitHub release per tag · semver · **SLSA-3** build provenance |
 | **Stability** | v3.0+ semver-bound — every CLI flag, tool name, MCP resource, prompt, exported symbol is contract |

package/dist/embeddings.d.ts.map CHANGED Viewed

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package/dist/embeddings.js CHANGED Viewed

@@ -217,8 +217,12 @@ export const RERANKER_MODELS = Object.freeze({
         maxTokens: 512
     },
     // mxbai-rerank-large-v2 — multilingual, ~280 MB. Higher quality than
-    // the xsmall variant (rerank-multilingual default). Multi-language
-    // benchmark performance is solid; cost is the larger download.
+    // the xsmall `rerank-multilingual` (which is the multilingual variant,
+    // NOT the project-wide default — see `DEFAULT_RERANKER_ALIAS` below; it
+    // was bumped to `rerank-bge` in v3.6.1 CRIT-2 because 4 of 5 catalog
+    // aliases fail at `AutoTokenizer.from_pretrained` due to a
+    // transformers.js compat issue). Multi-language benchmark performance
+    // is solid; cost is the larger download.
     "rerank-multilingual-large": {
         alias: "rerank-multilingual-large",
         hfId: "Xenova/mxbai-rerank-large-v2",

package/dist/embeddings.js.map CHANGED Viewed

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package/dist/fts5.d.ts CHANGED Viewed

@@ -108,7 +108,17 @@ export declare class FtsIndex {
         deleted: string[];
         unchanged: string[];
     };
-    /** Drop a file's chunks + state row. Idempotent. */
+    /** Drop a file's chunks + state row. Idempotent.
+     *
+     * v3.7.18 R-8 — wrapped in `db.transaction()` for atomicity. Pre-3.7.18
+     * the two DELETE statements ran independently; a crash / SIGKILL / DB
+     * lock contention between them could leave `source_state` saying "this
+     * file is indexed at mtime X" while `chunks` had no rows — causing the
+     * next watcher event to skip re-indexing (state matches) but search to
+     * miss the file (no chunks). Sibling of v3.7.10 audit #10 fix that
+     * wrapped `reindexFile` / `reindexPdfFile` / source_state in a txn for
+     * the same reason. Caught by round-20 external audit.
+     */
     dropFile(relPath: string): void;
     /** Re-chunk a single markdown file, replacing its existing chunks atomically.
      *

package/dist/fts5.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/fts5.js CHANGED Viewed

@@ -254,11 +254,24 @@ export class FtsIndex {
                 deleted.push(relPath);
         return { added, updated, deleted, unchanged };
     }
-    /** Drop a file's chunks + state row. Idempotent. */
+    /** Drop a file's chunks + state row. Idempotent.
+     *
+     * v3.7.18 R-8 — wrapped in `db.transaction()` for atomicity. Pre-3.7.18
+     * the two DELETE statements ran independently; a crash / SIGKILL / DB
+     * lock contention between them could leave `source_state` saying "this
+     * file is indexed at mtime X" while `chunks` had no rows — causing the
+     * next watcher event to skip re-indexing (state matches) but search to
+     * miss the file (no chunks). Sibling of v3.7.10 audit #10 fix that
+     * wrapped `reindexFile` / `reindexPdfFile` / source_state in a txn for
+     * the same reason. Caught by round-20 external audit.
+     */
     dropFile(relPath) {
         const db = this.requireDb();
-        db.prepare("DELETE FROM chunks WHERE rel_path = ?").run(relPath);
-        db.prepare("DELETE FROM source_state WHERE rel_path = ?").run(relPath);
+        const txn = db.transaction(() => {
+            db.prepare("DELETE FROM chunks WHERE rel_path = ?").run(relPath);
+            db.prepare("DELETE FROM source_state WHERE rel_path = ?").run(relPath);
+        });
+        txn();
     }
     /** Re-chunk a single markdown file, replacing its existing chunks atomically.
      *

package/dist/fts5.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/index.d.ts CHANGED Viewed

@@ -7,7 +7,7 @@
  * + `McpServer({version})`) and `src/tool-registry.ts` (used in the
  * `vault-info` resource payload).
  */
-export declare const VERSION = "3.7.16";
+export declare const VERSION = "3.7.18";
 export { main } from "./cli.js";
 export { buildEmbedText, buildMcpServer, formatReadyBanner, prepareServerDeps, type ServeOptions, type ServerDeps, startServer } from "./server.js";
 export { parsePositiveInt, parseQuantizationMode } from "./tool-registry.js";

package/dist/index.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";~~AA4BA~~;;;;;;;GAOG;AACH,eAAO,MAAM,OAAO,WAAW,CAAC;AAUhC,OAAO,EAAE,IAAI,EAAE,MAAM,UAAU,CAAC;AAChC,OAAO,EACL,cAAc,EACd,cAAc,EACd,iBAAiB,EACjB,iBAAiB,EACjB,KAAK,YAAY,EACjB,KAAK,UAAU,EACf,WAAW,EACZ,MAAM,aAAa,CAAC;AACrB,OAAO,EAAE,gBAAgB,EAAE,qBAAqB,EAAE,MAAM,oBAAoB,CAAC"}
1	+ {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";AAoCA;;;;;;;GAOG;AACH,eAAO,MAAM,OAAO,WAAW,CAAC;AAUhC,OAAO,EAAE,IAAI,EAAE,MAAM,UAAU,CAAC;AAChC,OAAO,EACL,cAAc,EACd,cAAc,EACd,iBAAiB,EACjB,iBAAiB,EACjB,KAAK,YAAY,EACjB,KAAK,UAAU,EACf,WAAW,EACZ,MAAM,aAAa,CAAC;AACrB,OAAO,EAAE,gBAAgB,EAAE,qBAAqB,EAAE,MAAM,oBAAoB,CAAC"}

package/dist/index.js CHANGED Viewed

@@ -1,6 +1,14 @@
 #!/usr/bin/env node
-// Slim entry point for enquire-mcp. Version 3.6.0-rc.2 split the previous
-// 3665-line monolith into domain modules:
+// Slim entry point for enquire-mcp. The current `VERSION` constant below
+// is the authoritative version (see `scripts/check-version-consistency.mjs`).
+//
+// History: v3.6.0-rc.2 split the previous 3665-line monolith into the
+// domain modules listed below. v3.7.x continued the consolidation. The
+// file-header comment used to read as if rc.2 was current — round-19
+// audit (v3.7.17) caught this as the "tombstone vs current-claim"
+// stale-comment class. Now reads as historical context (clearer.)
+//
+// Domain modules:
 //   - cli.ts            : `main()` + commander program definition (CLI parsing).
 //   - server.ts         : ServeOptions / ServerDeps / prepareServerDeps / buildMcpServer /
 //                         startServer / formatReadyBanner / buildEmbedText / sync* fns.
@@ -32,7 +40,7 @@ import { main } from "./cli.js";
  * + `McpServer({version})`) and `src/tool-registry.ts` (used in the
  * `vault-info` resource payload).
  */
-export const VERSION = "3.7.16";
+export const VERSION = "3.7.18";
 // Re-exports — preserve the v3.5.x public surface so http-transport.ts and
 // tests don't need to know about the new module layout. The set below
 // exactly matches the v3.5.x `export` declarations: `main`,

package/dist/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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