@oomkapwn/enquire-mcp 3.6.1 → 3.6.3

package/dist/doctor.js

@@ -27,7 +27,7 @@
 import { existsSync, promises as fs, statSync } from "node:fs";
 import * as os from "node:os";
 import * as path from "node:path";
-import { defaultIndexFile, FtsIndex } from "./fts5.js";
+import { defaultIndexFile, FtsIndex, peekFtsMetaSafe } from "./fts5.js";
 import { Vault } from "./vault.js";
 /** Simple ANSI color helpers — autodetect TTY so piped output stays clean. */
 const isTty = process.stdout.isTTY === true;
@@ -276,10 +276,18 @@ export async function runDoctor(opts) {
     if (vaultExists) {
         const indexFile = opts.indexFile ?? defaultIndexFile(vault.root);
         if (existsSync(indexFile) && hasSqlite) {
+            // v3.6.2 K-1b — `doctor` is a DIAGNOSTIC subcommand. It must NEVER
+            // cause side effects. Pre-fix: opening FtsIndex with default tokenize
+            // "unicode61" against an index built with "trigram" would fire the
+            // bootstrapSchema DROP TABLE path — `doctor --vault X` would silently
+            // destroy the user's FTS5 index. Peek tokenize_mode first; honor it.
+            // External audit on v3.6.1 caught this as a sibling of K-1.
+            const peeked = await peekFtsMetaSafe(indexFile);
+            const honoredTokenize = peeked?.tokenize_mode ?? "unicode61";
             // Open + close to count files/chunks. If something's off, surface it
             // as a warn (not missing — caller can still serve without the index).
             try {
-                const idx = new FtsIndex({ file: indexFile, vaultRoot: vault.root });
+                const idx = new FtsIndex({ file: indexFile, vaultRoot: vault.root, tokenize: honoredTokenize });
                 await idx.open();
                 const totalFiles = idx.totalFiles();
                 const totalChunks = idx.totalChunks();

package/dist/doctor.js.map

@@ -1 +1 @@
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package/dist/dql.d.ts

@@ -1,4 +1,9 @@
 import type { Vault } from "./vault.js";
+/**
+ * The `FROM` clause of a parsed DQL query. `"all"` means scan every note;
+ * `"folder"` restricts to a vault-relative subtree; `"tag"` restricts to
+ * notes carrying the given tag (frontmatter or inline).
+ */
 export type Source = {
     type: "all";
 } | {
@@ -8,29 +13,91 @@ export type Source = {
     type: "tag";
     tag: string;
 };
+/** Supported predicate operators in a DQL `WHERE` clause. `like` uses
+ *  SQL-LIKE-style `*` wildcards (case-insensitive). */
 export type Op = "=" | "!=" | "contains" | "like";
+/** A single `WHERE` predicate (`field op value`). */
 export interface Predicate {
+    /** Field path — either a `file.*` virtual field or a frontmatter key. */
     field: string;
+    /** Operator. See {@link Op}. */
     op: Op;
+    /** RHS literal. Coerced at parse time: bare numbers → number, `true`/`false`
+     *  → boolean, `null` → null, quoted strings → string, bare ident → string. */
     value: string | number | boolean | null;
 }
 /** A WHERE clause is a disjunction of conjunctions: (A AND B) OR (C AND D). */
 export type WhereGroups = Predicate[][];
+/**
+ * Fully parsed Dataview-Query-Language (DQL) query, ready for
+ * {@link runDql}.
+ */
 export interface DataviewQuery {
+    /** Result shape: `LIST` returns one row per note; `TABLE` returns named columns. */
     kind: "LIST" | "TABLE";
+    /** Column expressions (TABLE only). Empty for LIST. */
     columns: string[];
+    /** Source restriction — see {@link Source}. */
     source: Source;
+    /** Disjunction-of-conjunctions WHERE clause. Empty array means no filter. */
     where: WhereGroups;
+    /** Optional sort spec. Default is unsorted (source order). */
     sort?: {
         field: string;
         dir: "ASC" | "DESC";
     };
+    /** Optional row cap. Falls back to {@link DEFAULT_DQL_ROW_LIMIT} when undefined. */
     limit?: number;
 }
+/** Thrown by {@link parseDql} when input is not a valid DQL query.
+ *  Error message describes the failure point. */
 export declare class DqlParseError extends Error {
 }
+/**
+ * Parse a Dataview-Query-Language string into a {@link DataviewQuery}.
+ * Supports `LIST` / `TABLE` queries with `FROM`, `WHERE`, `SORT`, `LIMIT`
+ * clauses. WHERE supports `AND` / `OR` and the {@link Op} operators.
+ *
+ * Quoted strings are recognized via a simple quote-aware tokenizer so
+ * folder names with spaces or operator keywords survive.
+ *
+ * @param input - Raw DQL text. Whitespace-only input throws.
+ * @returns Parsed query ready for {@link runDql}.
+ * @throws {DqlParseError} On syntax errors (with a message pointing at the failing clause).
+ * @example
+ * ```ts
+ * const q = parseDql('TABLE file.name FROM "Inbox" WHERE status = "open" SORT mtime DESC LIMIT 10');
+ * q.kind;    // "TABLE"
+ * q.columns; // ["file.name"]
+ * q.source;  // { type: "folder", path: "Inbox" }
+ * ```
+ */
 export declare function parseDql(input: string): DataviewQuery;
+/**
+ * Default row cap for {@link runDql} when the query has no `LIMIT` clause.
+ * Prevents accidental "TABLE FROM" returning thousands of rows on a
+ * large vault.
+ */
 export declare const DEFAULT_DQL_ROW_LIMIT = 1000;
+/**
+ * Execute a parsed DQL query against a vault. Iterates the source
+ * restriction, evaluates the WHERE filter per note, sorts (if requested),
+ * and applies the row cap. Each result row carries `file.path`,
+ * `file.name`, `file.mtime` plus any TABLE-requested columns.
+ *
+ * @param vault - The vault to query.
+ * @param query - Parsed query (from {@link parseDql}).
+ * @param opts - Optional overrides; `defaultLimit` replaces
+ *   {@link DEFAULT_DQL_ROW_LIMIT} when the query has no `LIMIT`.
+ * @returns Result rows in sort order (or source order when unsorted),
+ *   truncated to the limit.
+ * @example
+ * ```ts
+ * const q = parseDql('LIST FROM "Inbox" WHERE status = "open"');
+ * const rows = await runDql(vault, q);
+ * for (const row of rows) console.log(row["file.path"]);
+ * ```
+ */
 export declare function runDql(vault: Vault, query: DataviewQuery, opts?: {
     defaultLimit?: number;
 }): Promise<Array<Record<string, unknown>>>;

package/dist/dql.d.ts.map

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package/dist/dql.js

@@ -1,6 +1,27 @@
+/** Thrown by {@link parseDql} when input is not a valid DQL query.
+ *  Error message describes the failure point. */
 export class DqlParseError extends Error {
 }
 const KEYWORDS = ["FROM", "WHERE", "SORT", "LIMIT"];
+/**
+ * Parse a Dataview-Query-Language string into a {@link DataviewQuery}.
+ * Supports `LIST` / `TABLE` queries with `FROM`, `WHERE`, `SORT`, `LIMIT`
+ * clauses. WHERE supports `AND` / `OR` and the {@link Op} operators.
+ *
+ * Quoted strings are recognized via a simple quote-aware tokenizer so
+ * folder names with spaces or operator keywords survive.
+ *
+ * @param input - Raw DQL text. Whitespace-only input throws.
+ * @returns Parsed query ready for {@link runDql}.
+ * @throws {DqlParseError} On syntax errors (with a message pointing at the failing clause).
+ * @example
+ * ```ts
+ * const q = parseDql('TABLE file.name FROM "Inbox" WHERE status = "open" SORT mtime DESC LIMIT 10');
+ * q.kind;    // "TABLE"
+ * q.columns; // ["file.name"]
+ * q.source;  // { type: "folder", path: "Inbox" }
+ * ```
+ */
 export function parseDql(input) {
     // No global whitespace collapse here — splitClauses is quote-aware and would
     // otherwise see post-collapsed quoted strings, which silently mangles real
@@ -201,7 +222,31 @@ function parseLimit(raw) {
         throw new DqlParseError(`Invalid LIMIT: ${raw} (positive integer required)`);
     return n;
 }
+/**
+ * Default row cap for {@link runDql} when the query has no `LIMIT` clause.
+ * Prevents accidental "TABLE FROM" returning thousands of rows on a
+ * large vault.
+ */
 export const DEFAULT_DQL_ROW_LIMIT = 1000;
+/**
+ * Execute a parsed DQL query against a vault. Iterates the source
+ * restriction, evaluates the WHERE filter per note, sorts (if requested),
+ * and applies the row cap. Each result row carries `file.path`,
+ * `file.name`, `file.mtime` plus any TABLE-requested columns.
+ *
+ * @param vault - The vault to query.
+ * @param query - Parsed query (from {@link parseDql}).
+ * @param opts - Optional overrides; `defaultLimit` replaces
+ *   {@link DEFAULT_DQL_ROW_LIMIT} when the query has no `LIMIT`.
+ * @returns Result rows in sort order (or source order when unsorted),
+ *   truncated to the limit.
+ * @example
+ * ```ts
+ * const q = parseDql('LIST FROM "Inbox" WHERE status = "open"');
+ * const rows = await runDql(vault, q);
+ * for (const row of rows) console.log(row["file.path"]);
+ * ```
+ */
 export async function runDql(vault, query, opts = {}) {
     const defaultLimit = opts.defaultLimit ?? DEFAULT_DQL_ROW_LIMIT;
     const folder = query.source.type === "folder" ? query.source.path : undefined;

package/dist/dql.js.map

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package/dist/embed-db.d.ts

@@ -2,10 +2,18 @@
 export type EmbedChunkKind = "md" | "pdf";
 /** v2.17.0 — vector storage encoding. */
 export type EmbedQuantization = "f32" | "int8";
+/**
+ * A single hit from {@link EmbedDb.search}. Mirrors the {@link FtsSearchHit}
+ * shape so the RRF fusion layer can blend them by id (rel_path + chunk_index).
+ */
 export interface EmbedSearchHit {
+    /** Vault-relative path of the source note / PDF. */
     rel_path: string;
+    /** 0-based chunk position within the source. */
     chunk_index: number;
+    /** 1-based starting line in the source. */
     line_start: number;
+    /** 1-based ending line in the source (inclusive). */
     line_end: number;
     /** Raw chunk text — caller can render snippets. */
     text_preview: string;
@@ -14,11 +22,17 @@ export interface EmbedSearchHit {
     /** v2.8.0 — content-source kind. Defaults to "md" for backward compat. */
     kind: EmbedChunkKind;
 }
+/** Counter summary returned by the embed-sync routine in `server.ts`. */
 export interface EmbedSyncReport {
+    /** Files newly embedded (no prior source_state row). */
     added: number;
+    /** Files re-embedded due to mtime change. */
     updated: number;
+    /** Files dropped because the source vanished from the vault. */
     deleted: number;
+    /** Files whose mtime matched the stored row — no work needed. */
     unchanged: number;
+    /** Total chunks in the index after the sync. */
     total_chunks: number;
 }
 interface SourceStateRow {
@@ -67,6 +81,26 @@ export declare function encodeInt8Vector(vec: Float32Array): Buffer;
  * many bytes are int8 vs the trailing min/scale tuple.
  */
 export declare function decodeInt8Vector(buf: Buffer, dim: number): Float32Array;
+/**
+ * Persistent embedding index backed by SQLite (one row per chunk + meta
+ * table for cross-vault contamination guards). Vectors are stored as
+ * Float32 BLOBs (default) or int8-quantized BLOBs (`quantization: "int8"`,
+ * ~4× storage reduction at ~1-2% recall@10 cost). Brute-force cosine
+ * top-K via {@link EmbedDb.search} or wrap with HNSW (see `src/hnsw.ts`)
+ * for sub-10ms queries at million-chunk scale.
+ *
+ * Schema is bootstrapped on `open()` and auto-rebuilt on any meta
+ * mismatch (vault root, model alias, dim, quantization, schema version).
+ *
+ * @example
+ * ```ts
+ * const db = new EmbedDb({ file, vaultRoot, modelAlias: "multilingual", dim: 384 });
+ * await db.open();
+ * db.upsertNote(relPath, mtimeMs, chunks);
+ * const hits = db.search(queryVec, 10);
+ * db.close();
+ * ```
+ */
 export declare class EmbedDb {
     private db;
     private readonly file;
@@ -78,9 +112,20 @@ export declare class EmbedDb {
     /** Bytes per encoded vector — pre-computed once for hot-path checks. */
     private readonly encodedBytes;
     constructor(opts: EmbedDbOptions);
+    /**
+     * Open the SQLite database, bootstrap the schema, and tighten file perms
+     * to 0o600 on the db + WAL/SHM sidecars (note bodies live here — same
+     * privacy posture as `vault.ts`'s persistent parse cache). Idempotent —
+     * a second call after an open is a no-op.
+     *
+     * @throws {Error} If `better-sqlite3` (an optional dependency) fails to
+     *   load or its native binding can't be loaded.
+     */
     open(): Promise<void>;
     /** Remove the embed db + WAL/SHM sidecars. Idempotent. */
     clearOnDisk(): Promise<boolean>;
+    /** Close the underlying SQLite handle. Idempotent — calling close
+     *  twice is safe. Call before process exit to flush WAL. */
     close(): void;
     private bootstrapSchema;
     private readMeta;

package/dist/embed-db.d.ts.map

@@ -1 +1 @@
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package/dist/embed-db.js

@@ -98,6 +98,26 @@ export function decodeInt8Vector(buf, dim) {
     }
     return out;
 }
+/**
+ * Persistent embedding index backed by SQLite (one row per chunk + meta
+ * table for cross-vault contamination guards). Vectors are stored as
+ * Float32 BLOBs (default) or int8-quantized BLOBs (`quantization: "int8"`,
+ * ~4× storage reduction at ~1-2% recall@10 cost). Brute-force cosine
+ * top-K via {@link EmbedDb.search} or wrap with HNSW (see `src/hnsw.ts`)
+ * for sub-10ms queries at million-chunk scale.
+ *
+ * Schema is bootstrapped on `open()` and auto-rebuilt on any meta
+ * mismatch (vault root, model alias, dim, quantization, schema version).
+ *
+ * @example
+ * ```ts
+ * const db = new EmbedDb({ file, vaultRoot, modelAlias: "multilingual", dim: 384 });
+ * await db.open();
+ * db.upsertNote(relPath, mtimeMs, chunks);
+ * const hits = db.search(queryVec, 10);
+ * db.close();
+ * ```
+ */
 export class EmbedDb {
     db = null;
     file;
@@ -116,6 +136,15 @@ export class EmbedDb {
         this.quantization = opts.quantization ?? "f32";
         this.encodedBytes = this.quantization === "int8" ? this.dim + 8 : this.dim * 4;
     }
+    /**
+     * Open the SQLite database, bootstrap the schema, and tighten file perms
+     * to 0o600 on the db + WAL/SHM sidecars (note bodies live here — same
+     * privacy posture as `vault.ts`'s persistent parse cache). Idempotent —
+     * a second call after an open is a no-op.
+     *
+     * @throws {Error} If `better-sqlite3` (an optional dependency) fails to
+     *   load or its native binding can't be loaded.
+     */
     async open() {
         if (this.db)
             return;
@@ -143,6 +172,8 @@ export class EmbedDb {
         }
         return removed;
     }
+    /** Close the underlying SQLite handle. Idempotent — calling close
+     *  twice is safe. Call before process exit to flush WAL. */
     close() {
         if (this.db) {
             this.db.close();

package/dist/embed-db.js.map

@@ -1 +1 @@
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package/dist/embeddings.d.ts

@@ -15,9 +15,24 @@ export interface EmbeddingModel {
     /** Maximum input tokens before transformers.js truncates. */
     maxTokens: number;
 }
+/**
+ * Catalog of supported embedding models, keyed by CLI-friendly alias.
+ * Add new entries by pinning the Xenova-converted ONNX model id, dim
+ * count, and approximate download size. Frozen at module load so
+ * runtime can't accidentally mutate.
+ */
 export declare const EMBEDDING_MODELS: Readonly<Record<string, EmbeddingModel>>;
 /** Default model alias when the user doesn't pass `--embedding-model`. */
 export declare const DEFAULT_MODEL_ALIAS = "multilingual";
+/**
+ * Look up an entry in the {@link EMBEDDING_MODELS} catalog. Throws with
+ * a list of known aliases if the input is unknown — surfaces typos at
+ * CLI parse time rather than after a 120MB model download.
+ *
+ * @param alias - Model alias, or `undefined` for the default ({@link DEFAULT_MODEL_ALIAS}).
+ * @returns The matching {@link EmbeddingModel} entry.
+ * @throws {Error} If `alias` isn't a known catalog key.
+ */
 export declare function resolveModel(alias: string | undefined): EmbeddingModel;
 /** Opaque handle for a loaded embedder. Constructed via `loadEmbedder()`. */
 export interface Embedder {
@@ -37,15 +52,33 @@ export declare function loadEmbedder(alias?: string): Promise<Embedder>;
 export declare function cosineSim(a: Float32Array, b: Float32Array): number;
 /** BGE reranker model catalog — analogous to `EMBEDDING_MODELS`. */
 export interface RerankerModel {
+    /** CLI-friendly alias passed via `--reranker-model <alias>`. */
     alias: string;
+    /** HuggingFace model id (Xenova-converted to ONNX). */
     hfId: string;
+    /** Approximate disk footprint in MB after download. */
     approxSizeMB: number;
+    /** True if trained on multilingual data. */
     multilingual: boolean;
     /** Max combined (query + passage) tokens — BGE base is 512. */
     maxTokens: number;
 }
+/**
+ * Catalog of supported cross-encoder reranker models, keyed by CLI alias.
+ * Each entry trades off quality vs latency vs download size; see comments
+ * inline for guidance. Frozen at module load.
+ */
 export declare const RERANKER_MODELS: Readonly<Record<string, RerankerModel>>;
 export declare const DEFAULT_RERANKER_ALIAS = "rerank-bge";
+/**
+ * Look up an entry in the {@link RERANKER_MODELS} catalog. Throws with
+ * a list of known aliases if the input is unknown.
+ *
+ * @param alias - Reranker alias, or `undefined` for the default
+ *   ({@link DEFAULT_RERANKER_ALIAS}).
+ * @returns The matching {@link RerankerModel} entry.
+ * @throws {Error} If `alias` isn't a known catalog key.
+ */
 export declare function resolveRerankerModel(alias: string | undefined): RerankerModel;
 /** Opaque handle for a loaded reranker. Constructed via `loadReranker()`. */
 export interface Reranker {

package/dist/embeddings.d.ts.map

@@ -1 +1 @@
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