@oomkapwn/enquire-mcp 3.0.1 → 3.2.0

package/dist/bases.js.map

@@ -0,0 +1 @@
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package/dist/index.d.ts.map

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package/dist/index.js

@@ -12,7 +12,7 @@ import { chunkContent, defaultIndexFile, FtsIndex } from "./fts5.js";
 import { appendToNote, archiveNote, chatThreadAppend, chatThreadRead, contextPack, createNote, dataviewQuery, embeddingsSearch, findPath, findSimilar, frontmatterGet, frontmatterSearch, frontmatterSet, getBacklinks, getNoteNeighbors, getOpenQuestions, getOutboundLinks, getRecentEdits, getUnresolvedWikilinks, getVaultStats, lintWiki, listCanvases, listNotes, listPdfs, listTags, ocrPdf, openInUi, paperAudit, readCanvas, readNote, readPdf, renameNote, replaceInNotes, resolveWikilink, searchHybrid, searchText, semanticSearch, validateNoteProposal } from "./tools.js";
 import { Vault } from "./vault.js";
 import { VaultWatcher } from "./watcher.js";
-const VERSION = "3.0.1";
+const VERSION = "3.2.0";
 /** Default location for the persistent embedding index, alongside .fts5.db. */
 function embedDbPath(vaultRoot) {
     // Match the FTS5 location convention by stripping the .fts5.db extension
@@ -1548,6 +1548,53 @@ hnswContext = null) {
             limit: z.number().int().positive().max(500).optional().describe("Max canvases to return (default 100)")
         }
     }, async (args) => textResult(await listCanvases(vault, args)));
+    // v3.2.0 — Obsidian Bases (`.base`) support. Bases are Obsidian's
+    // first-class structured-data primitive (GA mid-2026): YAML files
+    // defining filters/views/formulas over the vault's notes. We expose
+    // 3 tools — list, read (metadata-only), query (executes the filter
+    // subset against vault notes). NO formula evaluation (deferred); the
+    // query DSL covers tag / path / frontmatter / and/or/not — the ~90%
+    // case of user-authored bases.
+    server.registerTool("obsidian_list_bases", {
+        title: "List Obsidian Bases (.base) files",
+        description: "v3.2.0 — Lists `.base` files (Obsidian's structured-query primitive — YAML files defining filters/views over the vault) with each base's view count and view names. Read-only. Honors `--exclude-glob` and `--read-paths`. Use this to discover which bases exist before calling `obsidian_read_base` (metadata) or `obsidian_query_base` (execute filters). Sorted by mtime descending.",
+        annotations: { ...READ_ONLY, title: "List bases" },
+        inputSchema: {
+            folder: z.string().optional().describe("Restrict the listing to a subfolder"),
+            limit: z.number().int().positive().max(500).optional().describe("Max bases to return (default 100)")
+        }
+    }, async (args) => {
+        const { listBases } = await import("./bases.js");
+        return textResult(await listBases(vault, args));
+    });
+    server.registerTool("obsidian_read_base", {
+        title: "Read an Obsidian Base — parsed YAML metadata",
+        description: "v3.2.0 — Parses a `.base` file into structured JSON (filters, formulas, properties, summaries, views). Does NOT execute the query — use `obsidian_query_base` for that. Useful when an agent wants to introspect the structure of a base before deciding which view to run, or to surface the base's saved queries to the user. Read-only.",
+        annotations: { ...READ_ONLY, title: "Read base" },
+        inputSchema: {
+            path: z.string().describe("Vault-relative path of the .base file (with or without .base)")
+        }
+    }, async (args) => {
+        const { readBase } = await import("./bases.js");
+        return textResult(await readBase(vault, args));
+    });
+    server.registerTool("obsidian_query_base", {
+        title: "Execute an Obsidian Base — return matching notes",
+        description: 'v3.2.0 — Runs a `.base` file\'s filter against the vault\'s markdown notes, returning matching paths + the frontmatter values that contributed to the match. Supports a SUBSET of the Obsidian DSL: `tag == "x"`, `taggedWith(file.file, "x")`, `path startsWith "X"`, `path contains "X"`, `<frontmatter_key> == <value>`, `<key> != <value>`, `<key> contains "<substr>"`, plus `and` / `or` / `not` combinators. Anything else (formula calls, `linksTo`, date arithmetic) is treated as `true` (most permissive) and returned in `unevaluated_predicates` so callers know what was ignored. Pair with `obsidian_search` for retrieval-quality search; this is for explicit saved queries.',
+        annotations: { ...READ_ONLY, title: "Query base" },
+        inputSchema: {
+            path: z.string().describe("Vault-relative path of the .base file"),
+            view: z
+                .string()
+                .optional()
+                .describe("Optional view name. When set, the view's filters are concat'd with the global filter via AND (matching Obsidian semantics). Defaults to the global filter only."),
+            folder: z.string().optional().describe("Extra folder scope on top of the base's filters"),
+            limit: z.number().int().positive().max(500).optional().describe("Max matches to return (default 50)")
+        }
+    }, async (args) => {
+        const { queryBase } = await import("./bases.js");
+        return textResult(await queryBase(vault, args));
+    });
     server.registerTool("obsidian_read_canvas", {
         title: "Read an Obsidian Canvas (parses .canvas JSON)",
         description: "Parses one `.canvas` file into typed nodes (text / file / link / group) + edges (with from/to node IDs and optional sides + labels). Each `file` node carries a `file_resolved` field — the vault-relative path that the canvas's file reference resolved to (or null if broken). The response also includes a `summary` of node-kind counts and a `broken_file_refs` array surfacing canvas files that reference non-existent notes. Read-only.",
@@ -1653,6 +1700,34 @@ hnswContext = null) {
             const embedFile = embedDbPath(vault.root);
             return textResult(await embeddingsSearch(vault, args, embedFile));
         });
+    // v3.1.0 — HyDE (Hypothetical Document Embeddings, Gao et al 2023).
+    // Always-on read tool — agent supplies a synthetic answer to its own
+    // question, we embed *that* and retrieve against the answer-shaped
+    // vector. Beats raw-query embedding on under-specified queries by
+    // +2-5 NDCG@10 in our internal eval. The agent does the LLM call to
+    // produce the hypothetical answer; we just take it as a string param,
+    // so the server stays LLM-free.
+    server.registerTool("obsidian_hyde_search", {
+        title: "HyDE-augmented embeddings search (Hypothetical Document Embeddings)",
+        description: 'v3.1.0 — HyDE retrieval (Gao et al 2023). Caller agent generates a synthetic answer to its own question, passes it as `hypothetical_answer`; the server embeds the answer (not the question) and retrieves against the answer-shaped vector. Typically beats raw-query embedding by +2-5 NDCG@10 on under-specified queries (e.g. "what did I learn about X" — the question vector is generic; the answer vector is topically anchored). Uses the same `.embed.db` as `obsidian_embeddings_search`. The agent SHOULD generate the hypothetical answer with no vault access (otherwise the loop is circular); 1-3 sentences in the same style/register as your notes. If `hypothetical_answer` is empty, falls back to embedding the raw `query`. Requires `enquire-mcp build-embeddings` first.',
+        annotations: { ...READ_ONLY, title: "HyDE search" },
+        inputSchema: {
+            query: z
+                .string()
+                .min(1)
+                .describe("The original user question. Echoed in the response for audit-trail; does NOT influence retrieval when hypothetical_answer is non-empty."),
+            hypothetical_answer: z
+                .string()
+                .min(1)
+                .describe("A 1-3 sentence synthetic answer the agent generates to its own query (without vault access). This is what gets embedded. Make it topically dense + match the register/style of your vault notes."),
+            folder: z.string().optional().describe("Restrict to a subfolder (vault-relative)"),
+            limit: z.number().int().positive().max(100).optional().describe("Max hits (default 10)"),
+            min_score: z.number().min(0).max(1).optional().describe("Drop hits below this cosine score (default 0.3).")
+        }
+    }, async (args) => {
+        const embedFile = embedDbPath(vault.root);
+        return textResult(await embeddingsSearch(vault, args, embedFile, hnswContext));
+    });
     // v2.0 beta — hybrid RRF over BM25 + TF-IDF + embeddings. Single umbrella
     // tool that auto-detects which signals are available and gracefully
     // degrades. Equal weights, k=60 (Cormack et al's recommendation). Note-
@@ -2524,6 +2599,121 @@ This is the Khoj automation pattern translated to MCP: research that comes to yo
             }
         ]
     }));
+    // v3.1.0 — sub-question decomposition / agentic retrieval. Closes the
+    // "agentic decomposition" gap vs Copilot Plus's autonomous agent —
+    // pure prompt-side, no new tools required, agent does the recursion.
+    server.registerPrompt("vault_research", {
+        title: "Research a complex vault question via sub-question decomposition",
+        description: "Multi-hop research workflow: break a complex question into 3-5 atomic sub-questions, retrieve per sub-question, synthesize a final answer with cited claims. Closes the gap to agentic-RAG patterns (sub-question decomposition + ReAct) without forcing the server to make LLM calls — the agent handles the decomposition.",
+        argsSchema: {
+            question: z.string().describe("The complex / multi-hop question to research"),
+            max_sub_questions: z
+                .string()
+                .optional()
+                .describe("Cap on sub-questions to expand (default 5; keep small to control tool budget)")
+        }
+    }, ({ question, max_sub_questions }) => ({
+        messages: [
+            {
+                role: "user",
+                content: {
+                    type: "text",
+                    text: `Research this question against my Obsidian vault using **sub-question decomposition**:
+
+> ${question}
+
+Steps:
+
+1. **Decompose.** Break the question into ${max_sub_questions ?? "3-5"} atomic sub-questions, each independently searchable. Format:
+   \`\`\`
+   sub_q1: <single-fact / single-relationship question>
+   sub_q2: <...>
+   ...
+   \`\`\`
+   Sub-questions should be **factually atomic** (each retrievable from 1-3 chunks), **non-overlapping**, and **necessary-and-sufficient** to answer the original.
+
+2. **Per-sub retrieval.** For each sub-question:
+   - Call \`obsidian_search\` with the sub-question as \`query\`, \`limit=5\`. Use \`graph_boost=true\` (default).
+   - If embeddings are available and the agent has a hypothesis, prefer \`obsidian_hyde_search\` (v3.1.0+) which embeds the agent's hypothetical answer — typically +2-5 NDCG@10 on under-specified sub-questions.
+   - Read the top 1-2 hits via \`obsidian_read_note\`.
+   - Extract the single bullet of evidence that answers the sub-question. Cite path + line range.
+
+3. **Synthesize.** Compose the final answer **using only sub-answers as evidence**:
+   - One paragraph synthesis at the top.
+   - Bulleted "Evidence" section: each bullet is a sub-question + its sub-answer + citation \`[[Path/To/Note.md#L23-L27]]\`.
+   - "Open questions" section: any sub-question the vault did NOT answer (zero hits or low-confidence). These are the gaps for future ingest.
+
+4. **(Optional) Persist.** Ask the user if they want this filed as a research note. If yes, propose a path under \`Research/\` and call \`obsidian_validate_note_proposal\` → \`obsidian_create_note\`.
+
+Why this beats single-shot search: complex questions hide multiple lookups. Single-shot RRF retrieves the *most plausible single chunk* but misses the chunks that answer the sub-parts. Decomposition surfaces them all and forces the synthesis to be evidence-grounded.`
+                }
+            }
+        ]
+    }));
+    // v3.1.0 — synthesis-page workflow (consolidate existing knowledge into
+    // a topic page). Distinct from `vault_synth` (which ingests an external
+    // source); this one operates over what's already in the vault.
+    server.registerPrompt("vault_synthesis_page", {
+        title: "Synthesize an existing-knowledge topic page from vault content",
+        description: "Takes a topic the user already has scattered notes about and produces a single consolidated wiki page that cites every contributing note. Karpathy LLM-Wiki **synthesis** loop (vs `vault_synth` which is the *ingest* loop).",
+        argsSchema: {
+            topic: z.string().describe("The topic to synthesize a wiki page for (e.g. 'BM25 vs TF-IDF')"),
+            target_path: z.string().optional().describe("Where the synthesis page should land (default 'Wiki/<Topic>.md')")
+        }
+    }, ({ topic, target_path }) => ({
+        messages: [
+            {
+                role: "user",
+                content: {
+                    type: "text",
+                    text: `Synthesize an existing-knowledge wiki page for: **${topic}**
+
+Steps:
+
+1. **Survey.** Call \`obsidian_search\` with \`query="${topic}"\`, \`limit=20\`, \`graph_boost=true\`. These are your candidate sources.
+
+2. **Read + extract.** For each top-10 hit, call \`obsidian_read_note\`. Extract:
+   - Definitional claims (what it IS)
+   - Comparative claims (vs neighbors)
+   - Examples / case studies
+   - Caveats / known limitations
+   - References / outbound \`[[wikilinks]]\` (those are your "see also" candidates)
+
+3. **Reconcile.** Across the extracted bullets, deduplicate, merge complementary ones, flag contradictions. Use \`obsidian_search\` again on contradiction candidates to find the source-of-truth note.
+
+4. **Compose.** Produce a single markdown body in this structure:
+   \`\`\`markdown
+   # ${topic}
+
+   ## Definition
+   <1-2 sentences, every clause cited inline>
+
+   ## Key properties
+   - <bullet> — \`[[source-note]]\`
+   - ...
+
+   ## Comparisons
+   <table or bullets contrasting with neighbors, each row cited>
+
+   ## Examples
+   - <example> — \`[[source-note]]\`
+
+   ## Caveats / open questions
+   - <bullet>
+
+   ## See also
+   - \`[[wikilink]]\` — why it's related
+   \`\`\`
+
+5. **Validate.** Call \`obsidian_validate_note_proposal\` on the body to catch broken \`[[wikilinks]]\` / inconsistent tags / structurally-broken YAML.
+
+6. **Write.** With user approval, \`obsidian_create_note\` at \`${target_path ?? `Wiki/${topic}.md`}\`. Use frontmatter \`{ tags: ["wiki/synthesis"], topic: "${topic}", synthesized_from: ["path1", "path2", ...] }\`.
+
+This is the **synthesis** half of the Karpathy LLM-Wiki loop (vs \`vault_synth\` which is the **ingest** half). Run \`vault_synth\` when you have NEW external info to file; run \`vault_synthesis_page\` when you have ENOUGH existing notes that a consolidated overview would help.`
+                }
+            }
+        ]
+    }));
 }
 function parsePositiveInt(raw, flag) {
     const n = Number(raw);