@oomkapwn/enquire-mcp 2.9.0 → 2.11.0

package/dist/doctor.d.ts

@@ -0,0 +1,54 @@
+import type { EmbeddingModel } from "./embeddings.js";
+/** Severity buckets surfaced in the diagnostic UI. */
+export type CheckStatus = "ok" | "warn" | "missing" | "error";
+export interface DoctorCheck {
+    /** Stable id for programmatic consumers (e.g. JSON output). */
+    id: string;
+    /** Human-readable label (rendered next to the status icon). */
+    label: string;
+    status: CheckStatus;
+    /** Optional detail line printed below the label. */
+    detail?: string;
+    /** Optional hint — usually the command that fixes it. */
+    hint?: string;
+}
+export interface DoctorResult {
+    vault: string;
+    /** True iff every `missing`/`error` check is absent (`warn` is OK). */
+    ready: boolean;
+    checks: DoctorCheck[];
+    /** Tally for quick consumer reporting. */
+    summary: {
+        ok: number;
+        warn: number;
+        missing: number;
+        error: number;
+    };
+}
+/** Render one DoctorCheck to a multi-line string. */
+export declare function formatCheck(check: DoctorCheck): string;
+/** Render a full DoctorResult to a banner string. */
+export declare function formatDoctorResult(result: DoctorResult): string;
+export interface RunDoctorOptions {
+    vault: string;
+    /** Override default cache root (mostly for tests). */
+    modelCacheRoot?: string;
+    /** Override default embed-db location. */
+    embedFile?: string;
+    /** Override default FTS5 index location. */
+    indexFile?: string;
+    /** Default model alias to check for (matches DEFAULT_MODEL_ALIAS). */
+    modelAlias?: string;
+    /**
+     * Embedding-model catalog entry — passed in to avoid pulling
+     * `@huggingface/transformers` into this module. Caller resolves it via
+     * `resolveModel(alias)` from src/embeddings.ts.
+     */
+    modelEntry?: EmbeddingModel;
+}
+/**
+ * Run all the diagnostic checks. Pure data — caller decides how to
+ * render (CLI banner, JSON, MCP tool response).
+ */
+export declare function runDoctor(opts: RunDoctorOptions): Promise<DoctorResult>;
+//# sourceMappingURL=doctor.d.ts.map

package/dist/doctor.d.ts.map

@@ -0,0 +1 @@
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package/dist/doctor.js

@@ -0,0 +1,369 @@
+// Diagnostic + auto-setup for enquire-mcp.
+//
+// v2.11.0 — closes the biggest UX gap in the project: setup friction.
+// Before this, getting full hybrid retrieval required 3 separate commands
+// (`install-model` → `build-embeddings` → `serve --persistent-index`),
+// and there was no quick way to see "is everything ready?" without
+// triggering each codepath.
+//
+// Two new subcommands:
+//
+//   enquire-mcp doctor --vault <path>
+//      Read-only health check. Lists every prerequisite for full hybrid
+//      retrieval (vault path, optional deps, embedding model cache, FTS5
+//      index, embed.db). Color-coded ✓ / ⚠ / ✗. Returns 0 if everything
+//      is ready, 1 if any critical piece is missing.
+//
+//   enquire-mcp setup --vault <path>
+//      Runs the install + build sequence in order, with progress messages
+//      at each stage. Calls install-model + cold-build FTS5 + build-
+//      embeddings under the hood. Idempotent — re-running on a fully
+//      set-up vault is a no-op pass.
+//
+// Both are pure orchestration over existing CLI/library code — no new
+// runtime deps, no schema changes. Same privacy filter applies (the
+// doctor walks the vault via Vault.listMarkdown so excluded paths are
+// hidden from its counts).
+import { existsSync, promises as fs, statSync } from "node:fs";
+import * as os from "node:os";
+import * as path from "node:path";
+import { defaultIndexFile, FtsIndex } from "./fts5.js";
+import { Vault } from "./vault.js";
+/** Simple ANSI color helpers — autodetect TTY so piped output stays clean. */
+const isTty = process.stdout.isTTY === true;
+const c = {
+    green: (s) => (isTty ? `\x1b[32m${s}\x1b[0m` : s),
+    yellow: (s) => (isTty ? `\x1b[33m${s}\x1b[0m` : s),
+    red: (s) => (isTty ? `\x1b[31m${s}\x1b[0m` : s),
+    dim: (s) => (isTty ? `\x1b[2m${s}\x1b[0m` : s),
+    bold: (s) => (isTty ? `\x1b[1m${s}\x1b[0m` : s)
+};
+/** Render one DoctorCheck to a multi-line string. */
+export function formatCheck(check) {
+    const icon = check.status === "ok"
+        ? c.green("✓")
+        : check.status === "warn"
+            ? c.yellow("⚠")
+            : check.status === "missing"
+                ? c.red("✗")
+                : c.red("✗");
+    const lines = [`${icon}  ${check.label}`];
+    if (check.detail)
+        lines.push(c.dim(`   ${check.detail}`));
+    if (check.hint && check.status !== "ok")
+        lines.push(c.dim(`   → ${check.hint}`));
+    return lines.join("\n");
+}
+/** Render a full DoctorResult to a banner string. */
+export function formatDoctorResult(result) {
+    const lines = [];
+    lines.push(c.bold(`enquire-mcp doctor — ${result.vault}`));
+    lines.push("");
+    for (const check of result.checks)
+        lines.push(formatCheck(check));
+    lines.push("");
+    const { ok, warn, missing, error } = result.summary;
+    const verdict = result.ready
+        ? c.green(`READY — all critical checks pass (${ok} ok, ${warn} warnings)`)
+        : c.red(`NOT READY — ${missing + error} missing/error, ${warn} warnings, ${ok} ok`);
+    lines.push(verdict);
+    return lines.join("\n");
+}
+/**
+ * Candidate locations where transformers.js may have cached embedding model
+ * weights. We probe all of them and report `ok` if any contains data.
+ *
+ * Why multiple paths:
+ *   - transformers.js v3+ default: `<package>/.cache/Xenova/...` (lives
+ *     inside `node_modules/@huggingface/transformers/.cache`, the
+ *     library's own cache dir relative to its install location).
+ *   - Older HuggingFace Hub convention: `~/.cache/huggingface/...`.
+ *   - macOS XDG override: `~/Library/Caches/huggingface/...`.
+ *   - Custom env var: HF_HOME or TRANSFORMERS_CACHE if the user set them.
+ *
+ * We don't try to load transformers.js to read `env.cacheDir` — that
+ * would defeat the doctor's "fast read-only health check" promise on
+ * users who haven't installed the optional dep at all.
+ */
+function candidateModelCacheRoots() {
+    const candidates = [];
+    // 1. transformers.js v3+ default (lives inside the package itself).
+    // Find the @huggingface/transformers install directory.
+    // require.resolve doesn't exist in ESM; we walk node_modules ourselves
+    // from cwd. If transformers.js isn't installed, this candidate just
+    // won't exist on disk and gets filtered out.
+    candidates.push(path.join(process.cwd(), "node_modules", "@huggingface", "transformers", ".cache"));
+    // 2. HuggingFace Hub conventions.
+    if (process.env.HF_HOME)
+        candidates.push(path.join(process.env.HF_HOME, "hub"));
+    if (process.env.TRANSFORMERS_CACHE)
+        candidates.push(process.env.TRANSFORMERS_CACHE);
+    candidates.push(path.join(os.homedir(), ".cache", "huggingface", "transformers.js"));
+    candidates.push(path.join(os.homedir(), ".cache", "huggingface"));
+    // 3. macOS XDG-ish convention.
+    if (process.platform === "darwin") {
+        candidates.push(path.join(os.homedir(), "Library", "Caches", "huggingface"));
+    }
+    return candidates;
+}
+/**
+ * Default `.embed.db` location for a given vault root — same convention as
+ * the rest of the codebase. Mirrors `embedDbPath` in src/index.ts.
+ */
+function defaultEmbedDbFile(vaultRoot) {
+    return defaultIndexFile(vaultRoot).replace(/\.fts5\.db$/, ".embed.db");
+}
+/**
+ * Probe whether an optional dep is loadable in this process. Uses a
+ * dynamic import inside a try/catch so we never crash the diagnostic
+ * on a missing or broken native binding.
+ */
+async function probeOptionalDep(spec) {
+    try {
+        await import(spec);
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
+/**
+ * Run all the diagnostic checks. Pure data — caller decides how to
+ * render (CLI banner, JSON, MCP tool response).
+ */
+export async function runDoctor(opts) {
+    const checks = [];
+    const vault = new Vault(opts.vault);
+    // 1. Vault path exists + is readable.
+    let vaultExists = false;
+    try {
+        await vault.ensureExists();
+        vaultExists = true;
+        const noteCount = (await vault.listMarkdown()).length;
+        const pdfCount = (await vault.listFilesByExtension(".pdf")).length;
+        const canvasCount = (await vault.listFilesByExtension(".canvas")).length;
+        checks.push({
+            id: "vault",
+            label: `Vault accessible at ${opts.vault}`,
+            status: "ok",
+            detail: `${noteCount} markdown · ${pdfCount} pdf · ${canvasCount} canvas (privacy filter applied)`
+        });
+    }
+    catch (err) {
+        const msg = err instanceof Error ? err.message : String(err);
+        checks.push({
+            id: "vault",
+            label: `Vault path ${opts.vault}`,
+            status: "error",
+            detail: msg,
+            hint: "Check the path exists and is a directory"
+        });
+    }
+    // 2. better-sqlite3 — gates --persistent-index + ML embed-db.
+    const hasSqlite = await probeOptionalDep("better-sqlite3");
+    checks.push({
+        id: "dep:better-sqlite3",
+        label: "better-sqlite3 (FTS5 BM25 + embedding store)",
+        status: hasSqlite ? "ok" : "missing",
+        detail: hasSqlite ? "loaded; native binding works" : undefined,
+        hint: hasSqlite ? undefined : "npm install better-sqlite3 (or remove --omit=optional from your install)"
+    });
+    // 3. @huggingface/transformers — gates ML embeddings + reranker.
+    const hasTransformers = await probeOptionalDep("@huggingface/transformers");
+    checks.push({
+        id: "dep:transformers",
+        label: "@huggingface/transformers (ML embeddings + cross-encoder reranker)",
+        status: hasTransformers ? "ok" : "missing",
+        detail: hasTransformers ? "loaded; ONNX runtime available" : undefined,
+        hint: hasTransformers ? undefined : "npm install @huggingface/transformers"
+    });
+    // 4. pdfjs-dist — gates obsidian_read_pdf + PDF retrieval.
+    const hasPdfjs = await probeOptionalDep("pdfjs-dist/legacy/build/pdf.mjs");
+    checks.push({
+        id: "dep:pdfjs",
+        label: "pdfjs-dist (PDF read + indexing)",
+        status: hasPdfjs ? "ok" : "warn",
+        detail: hasPdfjs ? "loaded" : "PDFs in vault won't be indexable",
+        hint: hasPdfjs ? undefined : "npm install pdfjs-dist@^4.10.38 (skip if you have no PDFs)"
+    });
+    // 5. tesseract.js + @napi-rs/canvas — gates obsidian_ocr_pdf.
+    const [hasTesseract, hasCanvas] = await Promise.all([
+        probeOptionalDep("tesseract.js"),
+        probeOptionalDep("@napi-rs/canvas")
+    ]);
+    if (hasTesseract && hasCanvas) {
+        checks.push({
+            id: "dep:ocr",
+            label: "tesseract.js + @napi-rs/canvas (OCR for scanned PDFs)",
+            status: "ok",
+            detail: "both loaded; PDF OCR ready"
+        });
+    }
+    else {
+        checks.push({
+            id: "dep:ocr",
+            label: "tesseract.js + @napi-rs/canvas (OCR for scanned PDFs)",
+            status: "warn",
+            detail: `tesseract.js=${hasTesseract ? "ok" : "missing"} · canvas=${hasCanvas ? "ok" : "missing"}`,
+            hint: "npm install tesseract.js @napi-rs/canvas (skip if you have no scanned PDFs)"
+        });
+    }
+    // 6. Embedding model cache — does the user have weights downloaded?
+    // Probe every candidate path; whichever has Xenova-style model dirs
+    // wins. Fall back to "missing" only if every candidate is empty/absent.
+    const cacheRoots = opts.modelCacheRoot ? [opts.modelCacheRoot] : candidateModelCacheRoots();
+    let foundCacheRoot = null;
+    let cachedCount = 0;
+    let cacheBytes = 0;
+    for (const cacheRoot of cacheRoots) {
+        if (!existsSync(cacheRoot))
+            continue;
+        try {
+            // Look for at least one Xenova/* directory or any direct model dir
+            // (transformers.js stores models as `Xenova/<model-id>`).
+            const xenovaPath = path.join(cacheRoot, "Xenova");
+            if (existsSync(xenovaPath)) {
+                const sub = await fs.readdir(xenovaPath, { withFileTypes: true });
+                const models = sub.filter((e) => e.isDirectory());
+                if (models.length > 0) {
+                    foundCacheRoot = cacheRoot;
+                    cachedCount = models.length;
+                    // Best-effort size sum — bounded per model dir.
+                    for (const m of models) {
+                        try {
+                            const files = await fs.readdir(path.join(xenovaPath, m.name));
+                            for (const f of files) {
+                                try {
+                                    cacheBytes += statSync(path.join(xenovaPath, m.name, f)).size;
+                                }
+                                catch {
+                                    /* skip */
+                                }
+                            }
+                        }
+                        catch {
+                            /* skip */
+                        }
+                    }
+                    break;
+                }
+            }
+        }
+        catch {
+            /* try next candidate */
+        }
+    }
+    if (foundCacheRoot && cachedCount > 0) {
+        checks.push({
+            id: "model:cache",
+            label: "Embedding model cache",
+            status: "ok",
+            detail: `${cachedCount} model(s) cached under ${foundCacheRoot}/Xenova/ (~${Math.round(cacheBytes / 1024 / 1024)} MB)`
+        });
+    }
+    else {
+        checks.push({
+            id: "model:cache",
+            label: "Embedding model cache",
+            status: "missing",
+            detail: "no Xenova model weights found in any standard cache location",
+            hint: opts.modelEntry
+                ? `enquire-mcp install-model ${opts.modelEntry.alias}  (~${opts.modelEntry.approxSizeMB} MB)`
+                : "enquire-mcp install-model multilingual"
+        });
+    }
+    // 7. FTS5 index — does the persistent index exist for this vault?
+    if (vaultExists) {
+        const indexFile = opts.indexFile ?? defaultIndexFile(vault.root);
+        if (existsSync(indexFile) && hasSqlite) {
+            // Open + close to count files/chunks. If something's off, surface it
+            // as a warn (not missing — caller can still serve without the index).
+            try {
+                const idx = new FtsIndex({ file: indexFile, vaultRoot: vault.root });
+                await idx.open();
+                const totalFiles = idx.totalFiles();
+                const totalChunks = idx.totalChunks();
+                idx.close();
+                checks.push({
+                    id: "index:fts5",
+                    label: "FTS5 BM25 index",
+                    status: "ok",
+                    detail: `${indexFile} — ${totalFiles} files / ${totalChunks} chunks`
+                });
+            }
+            catch (err) {
+                const msg = err instanceof Error ? err.message : String(err);
+                checks.push({
+                    id: "index:fts5",
+                    label: "FTS5 BM25 index",
+                    status: "warn",
+                    detail: `${indexFile} present but failed to open: ${msg}`,
+                    hint: `enquire-mcp clear-index --vault ${opts.vault} && enquire-mcp index --vault ${opts.vault}`
+                });
+            }
+        }
+        else {
+            checks.push({
+                id: "index:fts5",
+                label: "FTS5 BM25 index",
+                status: "warn",
+                detail: hasSqlite ? `${indexFile} not built` : "needs better-sqlite3 first",
+                hint: hasSqlite ? `enquire-mcp index --vault ${opts.vault}` : "install better-sqlite3 first"
+            });
+        }
+    }
+    // 8. Embedding index — does the .embed.db exist for this vault?
+    if (vaultExists) {
+        const embedFile = opts.embedFile ?? defaultEmbedDbFile(vault.root);
+        if (existsSync(embedFile) && hasSqlite && hasTransformers) {
+            // Don't open the file (loading the model is expensive); just stat it
+            // and rely on the existence + size check.
+            try {
+                const sz = statSync(embedFile).size;
+                checks.push({
+                    id: "index:embed",
+                    label: "Embedding index (.embed.db)",
+                    status: "ok",
+                    detail: `${embedFile} — ${(sz / 1024 / 1024).toFixed(1)} MB`
+                });
+            }
+            catch (err) {
+                const msg = err instanceof Error ? err.message : String(err);
+                checks.push({
+                    id: "index:embed",
+                    label: "Embedding index (.embed.db)",
+                    status: "warn",
+                    detail: msg,
+                    hint: `enquire-mcp clear-embeddings --vault ${opts.vault} && enquire-mcp build-embeddings --vault ${opts.vault}`
+                });
+            }
+        }
+        else {
+            const blockers = [];
+            if (!hasSqlite)
+                blockers.push("better-sqlite3");
+            if (!hasTransformers)
+                blockers.push("@huggingface/transformers");
+            checks.push({
+                id: "index:embed",
+                label: "Embedding index (.embed.db)",
+                status: "warn",
+                detail: blockers.length > 0
+                    ? `blocked on: ${blockers.join(", ")}`
+                    : `${embedFile} not built — semantic-search-only path will use TF-IDF cosine`,
+                hint: blockers.length > 0
+                    ? `npm install ${blockers.join(" ")}`
+                    : `enquire-mcp build-embeddings --vault ${opts.vault}`
+            });
+        }
+    }
+    // Tally the summary.
+    const summary = { ok: 0, warn: 0, missing: 0, error: 0 };
+    for (const ch of checks)
+        summary[ch.status] += 1;
+    // "ready" means: no missing or error. Warnings are advisory — you can
+    // still serve a useful subset of the surface (e.g. without ML embeddings).
+    const ready = summary.missing === 0 && summary.error === 0;
+    return { vault: opts.vault, ready, checks, summary };
+}
+//# sourceMappingURL=doctor.js.map

package/dist/doctor.js.map

@@ -0,0 +1 @@
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package/dist/index.d.ts.map

@@ -1 +1 @@
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package/dist/index.js

@@ -9,10 +9,10 @@ import { z } from "zod";
 import { EmbedDb } from "./embed-db.js";
 import { DEFAULT_MODEL_ALIAS, EMBEDDING_MODELS, loadEmbedder, resolveModel } from "./embeddings.js";
 import { chunkContent, defaultIndexFile, FtsIndex } from "./fts5.js";
-import { appendToNote, archiveNote, chatThreadAppend, chatThreadRead, contextPack, createNote, dataviewQuery, embeddingsSearch, findPath, findSimilar, frontmatterGet, frontmatterSearch, frontmatterSet, getBacklinks, getNoteNeighbors, getOpenQuestions, getOutboundLinks, getRecentEdits, getUnresolvedWikilinks, getVaultStats, lintWiki, listCanvases, listNotes, listPdfs, listTags, openInUi, paperAudit, readCanvas, readNote, readPdf, renameNote, replaceInNotes, resolveWikilink, searchHybrid, searchText, semanticSearch, validateNoteProposal } from "./tools.js";
+import { appendToNote, archiveNote, chatThreadAppend, chatThreadRead, contextPack, createNote, dataviewQuery, embeddingsSearch, findPath, findSimilar, frontmatterGet, frontmatterSearch, frontmatterSet, getBacklinks, getNoteNeighbors, getOpenQuestions, getOutboundLinks, getRecentEdits, getUnresolvedWikilinks, getVaultStats, lintWiki, listCanvases, listNotes, listPdfs, listTags, ocrPdf, openInUi, paperAudit, readCanvas, readNote, readPdf, renameNote, replaceInNotes, resolveWikilink, searchHybrid, searchText, semanticSearch, validateNoteProposal } from "./tools.js";
 import { Vault } from "./vault.js";
 import { VaultWatcher } from "./watcher.js";
-const VERSION = "2.9.0";
+const VERSION = "2.11.0";
 /** Default location for the persistent embedding index, alongside .fts5.db. */
 function embedDbPath(vaultRoot) {
     // Match the FTS5 location convention by stripping the .fts5.db extension
@@ -254,6 +254,94 @@ async function main() {
             process.stdout.write(`enquire: no embedding index files at ${file}\n`);
         }
     });
+    // v2.11.0 — diagnostic + zero-touch onboarding. `doctor` is read-only and
+    // returns 0 if everything is ready, 1 if any critical setup is missing.
+    // `setup` runs the install + build sequence in order, idempotent.
+    program
+        .command("doctor")
+        .description("Run a read-only health check: verify the vault path, optional deps (better-sqlite3 / transformers / pdfjs / tesseract / canvas), embedding-model cache, FTS5 index, and embed-db. Returns 0 if everything is ready for full hybrid retrieval, 1 if any critical piece is missing. Color-coded ✓ / ⚠ / ✗ output. Use this when you're unsure what's set up vs not.")
+        .requiredOption("--vault <path>", "Path to the Obsidian vault root")
+        .option("--json", "Emit machine-readable JSON instead of the colored banner")
+        .action(async (opts) => {
+        const { runDoctor, formatDoctorResult } = await import("./doctor.js");
+        const result = await runDoctor({
+            vault: opts.vault,
+            modelEntry: EMBEDDING_MODELS[DEFAULT_MODEL_ALIAS]
+        });
+        if (opts.json) {
+            process.stdout.write(`${JSON.stringify(result, null, 2)}\n`);
+        }
+        else {
+            process.stdout.write(`${formatDoctorResult(result)}\n`);
+        }
+        if (!result.ready)
+            process.exit(1);
+    });
+    program
+        .command("setup")
+        .description("Zero-touch onboarding: run `install-model` + `index` + `build-embeddings` in sequence so a fresh vault is fully indexed for hybrid retrieval (BM25 + TF-IDF + ML embeddings) in a single command. Idempotent — re-running on a fully set-up vault is a fast no-op pass that just reports the existing state.")
+        .requiredOption("--vault <path>", "Path to the Obsidian vault root")
+        .option("--embedding-model <alias>", `Model alias (default: ${DEFAULT_MODEL_ALIAS})`, DEFAULT_MODEL_ALIAS)
+        .option("--include-pdfs", "Also index PDFs (FTS5 + embeddings). Off by default; opt-in because PDF extraction is slower.")
+        .option("--skip-embeddings", "Skip the install-model + build-embeddings steps (only build FTS5)")
+        .action(async (opts) => {
+        const v = new Vault(opts.vault);
+        await v.ensureExists();
+        process.stdout.write(`enquire setup — ${opts.vault}\n\n`);
+        // Step 1: FTS5 index.
+        process.stdout.write(">> Step 1/3: Cold-build FTS5 index\n");
+        const indexFile = defaultIndexFile(v.root);
+        const idx = new FtsIndex({ file: indexFile, vaultRoot: v.root });
+        await idx.open();
+        try {
+            const ftsReport = await syncFtsIndex(v, idx);
+            process.stdout.write(`   FTS5 (md): added=${ftsReport.added} updated=${ftsReport.updated} unchanged=${ftsReport.unchanged} chunks=${ftsReport.total_chunks}\n`);
+            if (opts.includePdfs) {
+                const pdfReport = await syncPdfFtsIndex(v, idx);
+                process.stdout.write(`   FTS5 (pdf): added=${pdfReport.added} updated=${pdfReport.updated} unchanged=${pdfReport.unchanged} chunks=${pdfReport.total_chunks}\n`);
+            }
+        }
+        finally {
+            idx.close();
+        }
+        if (opts.skipEmbeddings) {
+            process.stdout.write("\n>> Step 2-3 skipped (--skip-embeddings)\n");
+            process.stdout.write("\nSetup partial. Run without --skip-embeddings to enable ML hybrid retrieval.\n");
+            return;
+        }
+        // Step 2: Install-model.
+        process.stdout.write("\n>> Step 2/3: Install embedding model\n");
+        const model = resolveModel(opts.embeddingModel);
+        const t0 = Date.now();
+        const embedder = await loadEmbedder(opts.embeddingModel);
+        const [smokeVec] = await embedder.embed(["hello"]);
+        if (!smokeVec || smokeVec.length !== model.dim) {
+            throw new Error(`Model ${model.alias} loaded but dim mismatch: ${smokeVec?.length} vs ${model.dim}`);
+        }
+        process.stdout.write(`   model ${model.alias} ready (${model.dim}-dim, ${Date.now() - t0}ms warmup, cached under ~/.cache/huggingface/)\n`);
+        // Step 3: build-embeddings.
+        process.stdout.write("\n>> Step 3/3: Build embedding index\n");
+        const embedFile = embedDbPath(v.root);
+        const db = new EmbedDb({ file: embedFile, vaultRoot: v.root, modelAlias: model.alias, dim: model.dim });
+        await db.open();
+        try {
+            const embReport = await syncEmbedDb(v, db, embedder);
+            process.stdout.write(`   embed-db (md): added=${embReport.added} updated=${embReport.updated} unchanged=${embReport.unchanged} chunks=${embReport.total_chunks}\n`);
+            if (opts.includePdfs) {
+                const pdfReport = await syncPdfEmbedDb(v, db, embedder);
+                process.stdout.write(`   embed-db (pdf): added=${pdfReport.added} updated=${pdfReport.updated} unchanged=${pdfReport.unchanged} chunks=${pdfReport.total_chunks}\n`);
+            }
+        }
+        finally {
+            db.close();
+        }
+        process.stdout.write("\n✓ Setup complete. Now run:\n");
+        process.stdout.write(`   enquire-mcp serve --vault ${opts.vault} --persistent-index`);
+        if (opts.includePdfs)
+            process.stdout.write(" --include-pdfs");
+        process.stdout.write("\n");
+        process.stdout.write(`Or check status: enquire-mcp doctor --vault ${opts.vault}\n`);
+    });
     await program.parseAsync(process.argv);
 }
 /**
@@ -1148,7 +1236,7 @@ rerankerConfig = null) {
     }, async (args) => textResult(await listPdfs(vault, args)));
     server.registerTool("obsidian_read_pdf", {
         title: "Extract text from a PDF (page-by-page)",
-        description: "Extracts plain text from one PDF, returning per-page text + a `full_text` join + doc-level metadata (title/author/subject/etc). Image-only / scanned PDFs surface `has_text: false` so agents can detect-and-recommend OCR. Optional `pages` slice (1-indexed inclusive range) for partial reads of long documents. Read-only. Same path-safety + privacy filter as `obsidian_read_note`. Powered by Mozilla's PDF.js (Apache-2.0).",
+        description: "Extracts plain text from one PDF, returning per-page text + a `full_text` join + doc-level metadata (title/author/subject/etc). Image-only / scanned PDFs surface `has_text: false` so agents can detect-and-recommend OCR via `obsidian_ocr_pdf` (v2.10.0). Optional `pages` slice (1-indexed inclusive range) for partial reads of long documents. Read-only. Same path-safety + privacy filter as `obsidian_read_note`. Powered by Mozilla's PDF.js (Apache-2.0).",
         annotations: { ...READ_ONLY, title: "Read PDF" },
         inputSchema: {
             path: z.string().describe("Vault-relative path of the .pdf file (with or without .pdf)"),
@@ -1159,6 +1247,33 @@ rerankerConfig = null) {
             include_metadata: z.boolean().optional().describe("Include doc-level metadata in result (default true)")
         }
     }, async (args) => textResult(await readPdf(vault, args)));
+    // v2.10.0 — OCR for image-only / scanned PDFs. Completes the v2.7-v2.8
+    // PDF retrieval story: when `obsidian_read_pdf` returns `has_text: false`,
+    // the agent calls `obsidian_ocr_pdf` to extract text via Tesseract.js.
+    // Tesseract.js + @napi-rs/canvas are optionalDependencies — clean
+    // install-hint error if missing. ~1-2s per page on M1 CPU.
+    server.registerTool("obsidian_ocr_pdf", {
+        title: "OCR a scanned/image-only PDF (Tesseract.js)",
+        description: "Runs Tesseract OCR over each page of an image-only / scanned PDF, returning per-page text + per-page confidence + mean confidence + the same shape as `obsidian_read_pdf`. Use this when `obsidian_read_pdf` returns `has_text: false` (typical for scans, photographed paper, image-only PDFs). Multilingual via `lang` (default `'eng'`; multi-lang via `'+'`, e.g. `'eng+rus'`). Optional `pages` range and `scale` (DPI multiplier, default 2 ~ 150 DPI, capped at 4). ~1-2s per page on M1 CPU. Read-only. Powered by Tesseract.js (Apache-2.0; trained-data files download on first use into the local cache, ~10 MB per language) + @napi-rs/canvas for PDF→bitmap rendering. Both gated to `optionalDependencies` so the markdown-only path stays zero-cost.",
+        annotations: { ...READ_ONLY, title: "OCR PDF" },
+        inputSchema: {
+            path: z.string().describe("Vault-relative path of the .pdf file (with or without .pdf)"),
+            lang: z
+                .string()
+                .optional()
+                .describe("Tesseract language pack(s). Default 'eng'. Multi-lang via '+': 'eng+rus' for English+Russian mixed scans. Common: 'eng', 'rus', 'jpn', 'chi_sim', 'fra', 'deu'."),
+            pages: z
+                .tuple([z.number().int().positive(), z.number().int().positive()])
+                .optional()
+                .describe("Optional 1-indexed inclusive page range, e.g. [2, 5] OCRs pages 2..5"),
+            scale: z
+                .number()
+                .min(0.5)
+                .max(4)
+                .optional()
+                .describe("Render scale (DPI multiplier). Default 2 (~150 DPI). Higher = better OCR on small text but slower.")
+        }
+    }, async (args) => textResult(await ocrPdf(vault, args)));
     // v2.0.0-beta.3: gated — see comment on obsidian_search_text above.
     if (diagnosticSearchTools)
         server.registerTool("obsidian_semantic_search", {