@oomkapwn/enquire-mcp 2.10.0 → 2.12.0

package/dist/doctor.js.map

@@ -0,0 +1 @@
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package/dist/eval.d.ts

@@ -0,0 +1,117 @@
+import type { FtsIndex } from "./fts5.js";
+import type { Vault } from "./vault.js";
+/** A single evaluation query — relevant doc paths are the ground truth. */
+export interface EvalQuery {
+    /** Query text fed to obsidian_search. */
+    query: string;
+    /**
+     * Vault-relative paths considered relevant. Order doesn't matter — we
+     * only need the set membership. Paths are matched against
+     * `SearchHybridHit.path` exactly.
+     */
+    relevant: string[];
+    /** Optional human-readable id for logging / reports. */
+    id?: string;
+}
+/** Per-query scores. */
+export interface EvalQueryScore {
+    id: string;
+    query: string;
+    /** Normalized Discounted Cumulative Gain @ K. */
+    ndcg_at_k: number;
+    /** Recall @ K — fraction of relevant docs in top-K. */
+    recall_at_k: number;
+    /** Mean Reciprocal Rank — 1/rank of first relevant; 0 if none in top-K. */
+    mrr: number;
+    /** Number of relevant docs found anywhere in the top-K. */
+    hits_relevant: number;
+    /** Total relevant docs in the ground truth. */
+    hits_total_relevant: number;
+    /** Latency for this query in milliseconds. */
+    latency_ms: number;
+}
+/** Aggregate evaluation result. */
+export interface EvalResult {
+    /** Configuration label — useful for the matrix mode. */
+    label: string;
+    k: number;
+    query_count: number;
+    /** Per-query scores. */
+    per_query: EvalQueryScore[];
+    /** Mean NDCG@K across all queries. */
+    mean_ndcg: number;
+    /** Mean Recall@K across all queries. */
+    mean_recall: number;
+    /** Mean Reciprocal Rank across all queries. */
+    mean_mrr: number;
+    /** Mean latency in milliseconds. */
+    mean_latency_ms: number;
+    /** Total run wall time. */
+    total_wall_ms: number;
+}
+/**
+ * NDCG@K with binary relevance.
+ *
+ * DCG@K = sum_{i=1..K} rel_i / log2(i + 1)
+ * IdealDCG@K = sum_{i=1..min(K, |relevant|)} 1 / log2(i + 1)
+ * NDCG@K = DCG@K / IdealDCG@K
+ *
+ * Returns 0 when `relevant` is empty (no ground truth → undefined ratio).
+ */
+export declare function ndcgAtK(retrievedPaths: string[], relevant: ReadonlySet<string>, k: number): number;
+/** Recall @ K = |retrieved ∩ relevant| / |relevant|. */
+export declare function recallAtK(retrievedPaths: string[], relevant: ReadonlySet<string>, k: number): number;
+/** Mean Reciprocal Rank — 1/rank of first relevant; 0 if none in top-K. */
+export declare function reciprocalRank(retrievedPaths: string[], relevant: ReadonlySet<string>, k: number): number;
+/**
+ * Read a JSONL file of EvalQuery objects. Tolerates blank lines and
+ * comments (lines starting with `//`). Throws on invalid JSON or
+ * missing required fields.
+ */
+export declare function readQueriesJsonl(file: string): Promise<EvalQuery[]>;
+export interface RunEvalOptions {
+    vault: Vault;
+    queries: readonly EvalQuery[];
+    ftsIndex: FtsIndex | null;
+    embedFile: string;
+    k?: number;
+    /** Label for the result — useful when running multiple configurations. */
+    label?: string;
+    /** Pass-through to searchHybrid (e.g. graph_boost, min_signals). */
+    searchOpts?: {
+        graph_boost?: boolean;
+        min_signals?: number;
+        embedding_model?: string;
+    };
+    /** Optional reranker config — pass-through to searchHybrid. */
+    reranker?: {
+        alias?: string;
+        topN?: number;
+    };
+    /** Test-only DI for mocking the reranker. */
+    rerankerOverride?: {
+        score(query: string, passages: readonly string[]): Promise<number[]>;
+    };
+}
+/**
+ * Run obsidian_search across a set of evaluation queries and compute
+ * NDCG@K, Recall@K, MRR. Returns a fully-populated EvalResult.
+ *
+ * `embedFile` may be a non-existent path — embeddings simply won't
+ * contribute (graceful degradation matches `searchHybrid` behavior).
+ */
+export declare function runEval(opts: RunEvalOptions): Promise<EvalResult>;
+/**
+ * Render an EvalResult as a pretty CLI table. ANSI-colored when stdout
+ * is a TTY, plain text otherwise (so `enquire eval | tee report.txt`
+ * stays readable).
+ */
+export declare function formatEvalResult(result: EvalResult, opts?: {
+    perQuery?: boolean;
+}): string;
+/**
+ * Render multiple EvalResults side-by-side as a comparison matrix. Used
+ * by `enquire eval --matrix` to A/B several configurations in one run.
+ */
+export declare function formatEvalMatrix(results: readonly EvalResult[]): string;
+//# sourceMappingURL=eval.d.ts.map

package/dist/eval.d.ts.map

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package/dist/eval.js

@@ -0,0 +1,266 @@
+// Retrieval-quality evaluation harness for enquire-mcp.
+//
+// v2.12.0 — closes the "you can't tune what you can't measure" gap. Before
+// this, anyone trying to A/B test retrieval changes (graph_boost on/off,
+// reranker on/off, different limit / min_signals values) had to write a
+// custom script. Now there's a first-class subcommand:
+//
+//   enquire-mcp eval --vault <path> --queries <file>
+//      Reads JSONL queries with known-relevant doc paths, runs
+//      `obsidian_search` for each, computes NDCG@10 + Recall@10 + MRR,
+//      reports per-query + aggregate scores. Pretty table by default,
+//      `--json` for machine-readable output, `--matrix` to A/B several
+//      flag combinations side-by-side in one run.
+//
+// Standard IR metrics (Manning et al, "Introduction to Information
+// Retrieval", Chapter 8):
+//   • NDCG@K (Normalized Discounted Cumulative Gain) — penalizes
+//     relevant docs found low in the ranking; 1.0 is perfect, 0.0 is
+//     worst. Best for graded relevance + position-aware comparison.
+//   • Recall@K — fraction of relevant docs found in top-K. Best for
+//     "did we surface ANY relevant content?" measurement.
+//   • MRR (Mean Reciprocal Rank) — 1/rank of the first relevant doc.
+//     Best for "did we put SOMETHING relevant near the top?"
+//
+// We treat the user's `relevant` paths as binary-relevance ground truth
+// (each listed path is gain=1, others are gain=0) since most users won't
+// label graded relevance. The DCG formula simplifies to
+// sum(rel_i / log2(i + 1)) where rel_i ∈ {0, 1}. NDCG normalizes by the
+// ideal DCG = sum(1 / log2(i + 1)) for i in [1, |relevant|].
+//
+// "Only enquire-mcp has this": no other Obsidian-MCP ships a built-in
+// retrieval evaluation harness. This makes Karpathy-style LLM Wiki users
+// systematically tune their hybrid retrieval — measure first, then
+// adjust graph_boost / reranker / min_signals based on real numbers
+// over their real corpus.
+import { promises as fs } from "node:fs";
+import { searchHybrid } from "./tools.js";
+/**
+ * NDCG@K with binary relevance.
+ *
+ * DCG@K = sum_{i=1..K} rel_i / log2(i + 1)
+ * IdealDCG@K = sum_{i=1..min(K, |relevant|)} 1 / log2(i + 1)
+ * NDCG@K = DCG@K / IdealDCG@K
+ *
+ * Returns 0 when `relevant` is empty (no ground truth → undefined ratio).
+ */
+export function ndcgAtK(retrievedPaths, relevant, k) {
+    if (relevant.size === 0)
+        return 0;
+    let dcg = 0;
+    for (let i = 0; i < Math.min(k, retrievedPaths.length); i++) {
+        const path = retrievedPaths[i];
+        if (path && relevant.has(path)) {
+            dcg += 1 / Math.log2(i + 2); // i+2 because i is 0-indexed; rank = i+1, log2(rank+1)
+        }
+    }
+    let idealDcg = 0;
+    for (let i = 0; i < Math.min(k, relevant.size); i++) {
+        idealDcg += 1 / Math.log2(i + 2);
+    }
+    return idealDcg > 0 ? dcg / idealDcg : 0;
+}
+/** Recall @ K = |retrieved ∩ relevant| / |relevant|. */
+export function recallAtK(retrievedPaths, relevant, k) {
+    if (relevant.size === 0)
+        return 0;
+    let hits = 0;
+    for (let i = 0; i < Math.min(k, retrievedPaths.length); i++) {
+        const path = retrievedPaths[i];
+        if (path && relevant.has(path))
+            hits += 1;
+    }
+    return hits / relevant.size;
+}
+/** Mean Reciprocal Rank — 1/rank of first relevant; 0 if none in top-K. */
+export function reciprocalRank(retrievedPaths, relevant, k) {
+    for (let i = 0; i < Math.min(k, retrievedPaths.length); i++) {
+        const path = retrievedPaths[i];
+        if (path && relevant.has(path))
+            return 1 / (i + 1);
+    }
+    return 0;
+}
+/**
+ * Read a JSONL file of EvalQuery objects. Tolerates blank lines and
+ * comments (lines starting with `//`). Throws on invalid JSON or
+ * missing required fields.
+ */
+export async function readQueriesJsonl(file) {
+    const raw = await fs.readFile(file, "utf8");
+    const queries = [];
+    let lineNum = 0;
+    for (const line of raw.split("\n")) {
+        lineNum += 1;
+        const trimmed = line.trim();
+        if (trimmed.length === 0 || trimmed.startsWith("//"))
+            continue;
+        try {
+            const parsed = JSON.parse(trimmed);
+            if (typeof parsed.query !== "string" || parsed.query.length === 0) {
+                throw new Error(`line ${lineNum}: missing or empty 'query' field`);
+            }
+            if (!Array.isArray(parsed.relevant) || parsed.relevant.some((p) => typeof p !== "string")) {
+                throw new Error(`line ${lineNum}: 'relevant' must be an array of vault-relative path strings`);
+            }
+            queries.push({
+                query: parsed.query,
+                relevant: parsed.relevant,
+                ...(parsed.id ? { id: parsed.id } : {})
+            });
+        }
+        catch (err) {
+            const msg = err instanceof Error ? err.message : String(err);
+            throw new Error(`enquire eval: failed to parse queries file at line ${lineNum} — ${msg}`);
+        }
+    }
+    return queries;
+}
+/**
+ * Run obsidian_search across a set of evaluation queries and compute
+ * NDCG@K, Recall@K, MRR. Returns a fully-populated EvalResult.
+ *
+ * `embedFile` may be a non-existent path — embeddings simply won't
+ * contribute (graceful degradation matches `searchHybrid` behavior).
+ */
+export async function runEval(opts) {
+    const k = opts.k ?? 10;
+    const totalT0 = Date.now();
+    const perQuery = [];
+    for (let i = 0; i < opts.queries.length; i++) {
+        const q = opts.queries[i];
+        if (!q)
+            continue;
+        const id = q.id ?? `q${i + 1}`;
+        const relevantSet = new Set(q.relevant);
+        const t0 = Date.now();
+        let hits = [];
+        try {
+            const result = await searchHybrid(opts.vault, {
+                query: q.query,
+                limit: k,
+                ...(opts.searchOpts?.graph_boost !== undefined ? { graph_boost: opts.searchOpts.graph_boost } : {}),
+                ...(opts.searchOpts?.min_signals !== undefined ? { min_signals: opts.searchOpts.min_signals } : {}),
+                ...(opts.searchOpts?.embedding_model ? { embedding_model: opts.searchOpts.embedding_model } : {})
+            }, {
+                ftsIndex: opts.ftsIndex,
+                embedFile: opts.embedFile,
+                ...(opts.reranker ? { reranker: opts.reranker } : {}),
+                ...(opts.rerankerOverride ? { rerankerOverride: opts.rerankerOverride } : {})
+            });
+            hits = result.matches;
+        }
+        catch (err) {
+            // Per-query isolation — one bad query doesn't sink the whole eval.
+            // The query's scores will all be 0 and we keep going.
+            process.stderr.write(`enquire eval: query "${q.query.slice(0, 60)}" failed — ${err instanceof Error ? err.message : String(err)}\n`);
+        }
+        const latency = Date.now() - t0;
+        const retrievedPaths = hits.map((h) => h.path);
+        const ndcg = ndcgAtK(retrievedPaths, relevantSet, k);
+        const recall = recallAtK(retrievedPaths, relevantSet, k);
+        const mrr = reciprocalRank(retrievedPaths, relevantSet, k);
+        let hitsRelevant = 0;
+        for (const p of retrievedPaths.slice(0, k)) {
+            if (relevantSet.has(p))
+                hitsRelevant += 1;
+        }
+        perQuery.push({
+            id,
+            query: q.query,
+            ndcg_at_k: round(ndcg),
+            recall_at_k: round(recall),
+            mrr: round(mrr),
+            hits_relevant: hitsRelevant,
+            hits_total_relevant: relevantSet.size,
+            latency_ms: latency
+        });
+    }
+    const meanNdcg = mean(perQuery.map((p) => p.ndcg_at_k));
+    const meanRecall = mean(perQuery.map((p) => p.recall_at_k));
+    const meanMrr = mean(perQuery.map((p) => p.mrr));
+    const meanLatency = mean(perQuery.map((p) => p.latency_ms));
+    return {
+        label: opts.label ?? "default",
+        k,
+        query_count: perQuery.length,
+        per_query: perQuery,
+        mean_ndcg: round(meanNdcg),
+        mean_recall: round(meanRecall),
+        mean_mrr: round(meanMrr),
+        mean_latency_ms: Math.round(meanLatency),
+        total_wall_ms: Date.now() - totalT0
+    };
+}
+function mean(xs) {
+    if (xs.length === 0)
+        return 0;
+    let s = 0;
+    for (const x of xs)
+        s += x;
+    return s / xs.length;
+}
+function round(x) {
+    return Math.round(x * 10000) / 10000;
+}
+/**
+ * Render an EvalResult as a pretty CLI table. ANSI-colored when stdout
+ * is a TTY, plain text otherwise (so `enquire eval | tee report.txt`
+ * stays readable).
+ */
+export function formatEvalResult(result, opts = {}) {
+    const isTty = process.stdout.isTTY === true;
+    const bold = (s) => (isTty ? `\x1b[1m${s}\x1b[0m` : s);
+    const dim = (s) => (isTty ? `\x1b[2m${s}\x1b[0m` : s);
+    const lines = [];
+    lines.push(bold(`enquire eval — ${result.label}`));
+    lines.push(`  ${result.query_count} queries · k=${result.k} · wall=${result.total_wall_ms}ms`);
+    lines.push("");
+    if (opts.perQuery) {
+        lines.push(bold("per query:"));
+        lines.push("  id              ndcg@k  recall@k  mrr     hits   latency");
+        for (const p of result.per_query) {
+            lines.push(`  ${p.id.padEnd(15)} ${p.ndcg_at_k.toFixed(4)}  ${p.recall_at_k.toFixed(4)}    ${p.mrr.toFixed(4)}  ${`${p.hits_relevant}/${p.hits_total_relevant}`.padEnd(6)} ${p.latency_ms}ms`);
+        }
+        lines.push("");
+    }
+    lines.push(bold("aggregate:"));
+    lines.push(`  mean NDCG@${result.k}   = ${result.mean_ndcg.toFixed(4)}`);
+    lines.push(`  mean Recall@${result.k} = ${result.mean_recall.toFixed(4)}`);
+    lines.push(`  mean MRR        = ${result.mean_mrr.toFixed(4)}`);
+    lines.push(`  mean latency    = ${result.mean_latency_ms}ms ${dim("(per query)")}`);
+    return lines.join("\n");
+}
+/**
+ * Render multiple EvalResults side-by-side as a comparison matrix. Used
+ * by `enquire eval --matrix` to A/B several configurations in one run.
+ */
+export function formatEvalMatrix(results) {
+    if (results.length === 0)
+        return "(no results)";
+    const isTty = process.stdout.isTTY === true;
+    const bold = (s) => (isTty ? `\x1b[1m${s}\x1b[0m` : s);
+    const lines = [];
+    lines.push(bold(`enquire eval matrix (${results.length} configs)`));
+    lines.push("");
+    // Column header.
+    const labelWidth = Math.max(...results.map((r) => r.label.length), 8) + 2;
+    const header = `${"label".padEnd(labelWidth)}NDCG@${results[0]?.k ?? 10}  Recall@${results[0]?.k ?? 10}  MRR     latency`;
+    lines.push(bold(header));
+    // Rows.
+    for (const r of results) {
+        lines.push(`${r.label.padEnd(labelWidth)}${r.mean_ndcg.toFixed(4)}   ${r.mean_recall.toFixed(4)}     ${r.mean_mrr.toFixed(4)}  ${r.mean_latency_ms}ms`);
+    }
+    // Best-config callout.
+    let best = results[0];
+    if (best) {
+        for (const r of results) {
+            if (r.mean_ndcg > best.mean_ndcg)
+                best = r;
+        }
+        lines.push("");
+        lines.push(`best NDCG@${best.k}: ${bold(best.label)} (${best.mean_ndcg.toFixed(4)})`);
+    }
+    return lines.join("\n");
+}
+//# sourceMappingURL=eval.js.map

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package/dist/index.d.ts.map

@@ -1 +1 @@
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