@oomkapwn/enquire-mcp 2.0.0-alpha.0 → 2.0.0-beta.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +146 -0
- package/README.md +18 -7
- package/SECURITY.md +2 -1
- package/dist/embed-db.d.ts.map +1 -1
- package/dist/embed-db.js +30 -5
- package/dist/embed-db.js.map +1 -1
- package/dist/fts5.d.ts.map +1 -1
- package/dist/fts5.js +18 -0
- package/dist/fts5.js.map +1 -1
- package/dist/index.d.ts.map +1 -1
- package/dist/index.js +75 -8
- package/dist/index.js.map +1 -1
- package/dist/rrf.d.ts +46 -0
- package/dist/rrf.d.ts.map +1 -0
- package/dist/rrf.js +71 -0
- package/dist/rrf.js.map +1 -0
- package/dist/tools.d.ts +47 -0
- package/dist/tools.d.ts.map +1 -1
- package/dist/tools.js +181 -0
- package/dist/tools.js.map +1 -1
- package/dist/vault.d.ts.map +1 -1
- package/dist/vault.js +21 -1
- package/dist/vault.js.map +1 -1
- package/docs/api.md +54 -2
- package/package.json +2 -2
package/CHANGELOG.md
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All notable changes to this project will be documented here. The format follows [Keep a Changelog](https://keepachangelog.com/en/1.1.0/), and the project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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## [2.0.0-beta.1] — 2026-05-06
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**Audit-driven patch.** An independent external audit of v2.0.0-beta.0 surfaced one P0 privacy/security bug, several P1 doc/correctness drifts, and a handful of P2 hardening opportunities. This release closes all 17 findings (1 P0 + 7 P1 + 7 P2 + 2 P3). No new features.
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### Fixed — P0: `obsidian_create_note` privacy bypass (`vault.writeNote`)
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**Long-standing bug, present since v0.11.** `Vault.writeNote()` used `resolveInside()` (path-traversal check only) and never called `isExcluded()`. So:
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```bash
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enquire-mcp serve --vault ~/vault --enable-write --read-paths 'Public/**'
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# → obsidian_create_note({ path: 'Private/secret.md', content: 'leaked' }) succeeded
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```
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A server with `--read-paths "Public/**"` allowed writes to `Private/`. With `overwrite: true`, a known excluded path could be clobbered. This violated the SECURITY.md privacy contract that explicitly claimed "the same predicate gates `listMarkdown()`, `listFilesByExtension()`, `resolveSafePath()` (so `readNote` / `readBinaryFile` / write paths all respect it)."
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`writeNote()` now calls `isExcluded()` and surfaces the same allowlist-vs-denylist reason as `resolveSafePath()`. `appendNote()` and `renameFile()` were already safe (verified). Three regression tests added in `tests/security.test.ts`.
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### Fixed — P1: `searchHybrid` starves the embeddings ranker
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`searchHybrid` called `embeddingsSearch` without `min_score`, picking up the standalone tool's `0.3` default. BM25 (no floor) and TF-IDF (0.05) fan out wider, so RRF received an asymmetric candidate pool from embeddings. The user-facing precision filter belongs *after* fusion (`min_signals`), not before. Now passes `min_score: 0` for fan-out.
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### Fixed — P1: `obsidian_create_note({ path: "" })` silently created `.md`
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The walker hides dotfiles, so an empty-path create silently produced an invisible file. The MCP-tool schema now requires `path: z.string().min(1)`; `vault.writeNote()` runtime-rejects empty / whitespace / dot-only names. Test in `tests/security.test.ts`.
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### Added — P1: `--enabled-tools` / `--disabled-tools` unknown-name validation
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The SECURITY.md docs claimed unknown tool names would log a warning. The code didn't actually validate. A typo in `--disabled-tools obsidan_search` (missing `i`) silently disabled nothing. Now we track which user-supplied names matched a registered tool; any unmatched name produces a stderr warning listing the available tools so the user can correct it.
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### Docs
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- `README.md`: removed misleading "Stable" badge from v2-beta-doc page; added separate `@latest` and `@beta` shields. Quick-start now documents both channels with explicit `@beta` for v2 features.
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- `README.md`: tool counts updated (24 always-on read + 1 opt-in FTS5 + 5 opt-in write = 30 total).
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- `README.md`: test count refreshed (388+).
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- `SECURITY.md`: removed phantom `obsidian_resolve_periodic_alias` tool reference (the resolver is internal to `resolveTarget`, never exposed as its own tool).
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- `SECURITY.md`: documented the `paraphrase-multilingual-MiniLM-L12-v2` 128-token truncation as a known recall caveat (use `bge` for longer-context English).
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- `docs/api.md`: full v2.0 surface — `obsidian_search`, `obsidian_embeddings_search`, and the `install-model` / `build-embeddings` / `clear-embeddings` subcommands now documented (was a 0% delta from v1.x; the audit caught this gap).
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### Hardening — P2
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- `embed-db.ts:search()` folder filter now uses `substr(rel_path, 1, ?) = ?` instead of `rel_path LIKE ? || '%'`. LIKE expanded `%` and `_` chars — rare but possible in Obsidian folder names. Matches the safe pattern from `fts5.ts:search()`.
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- `embed-db.ts:search()` asserts `byteLength === dim*4` before wrapping a vector BLOB into `Float32Array`. A truncated row (e.g. from an aborted upsert) would otherwise produce a Float32Array reading past the source buffer's end and silently emit garbage scores. Skip + warn instead.
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- `rrf.ts:reciprocalRankFusion()` guards duplicate `(id, signal)` pairs. A buggy ranker emitting the same id twice would have silently double-added the signal's contribution. Now we keep only the best (lowest) rank per id within a single signal.
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- `tests/search-hybrid.test.ts`: BM25 + TF-IDF fusion path now has CI coverage (5 new tests). Pre-fix, every test passed `ftsIndex: null` and skipped the chunk-collapse + rank-renumbering branch — a regression there could have shipped silently.
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- `fts5.ts` + `embed-db.ts`: `loadBetterSqlite()` now probes the native binding via `:memory:` open + close before caching the constructor. Catches the "JS package present but `.node` binary missing" failure mode (e.g. `npm ci --ignore-scripts`, broken native build, unsupported platform). Surface a clean error pointing at `npm rebuild better-sqlite3`, not a raw bindings stack trace.
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- `tests/cli.test.ts`: `canRunFts5` now does the same constructor probe instead of import-only. CI no longer runs FTS5 E2E tests when the binding actually doesn't work.
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### Process — P3
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- `version-consistency` CI job is now in the `main-protection` ruleset's required status checks. Pre-fix, a PR could theoretically merge with version drift across the 5 surfaces.
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- Lockfile refreshed via `npm audit fix` to resolve `ip-address <=10.1.0` → `10.2.0` (GHSA-v2v4-37r5-5v8g — moderate XSS in HTML-emitting helpers; zero real impact on a stdio MCP server but blocks `npm audit --audit-level=moderate`).
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### Tests
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393 unit tests pass (was 384, +9 new). +5 hybrid BM25 path, +3 createNote privacy regressions, +1 createNote empty-path validation.
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### Migration from v2.0.0-beta.0
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**No breaking changes.** This is a pure audit-fix patch.
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## [2.0.0-beta.0] — 2026-05-06
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**Theme: Hybrid RRF retrieval.** v2.0.0-alpha.0 shipped ML embeddings as a standalone tool. v2.0.0-beta.0 ships the integration step: a single `obsidian_search` umbrella tool that fuses every available retrieval signal — BM25 (FTS5) + TF-IDF cosine + ML embeddings — via Reciprocal Rank Fusion (Cormack et al, 2009).
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This is the v2.0 user-facing thesis: instead of agents picking between four nearly-identical search tools and getting different recall depending on the choice, they call one tool that automatically picks the best evidence available. Result: better recall on paraphrase / synonym / cross-language queries without configuration.
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### Added — `obsidian_search` MCP tool (the new default)
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Single umbrella tool that auto-detects available signals and fuses them via RRF with k=60. Gracefully degrades:
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- **TF-IDF only** (no `--persistent-index`, no embeddings) → produces TF-IDF ranking.
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- **BM25 + TF-IDF** (add `--persistent-index`) → keyword-augmented retrieval, sub-100ms.
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- **BM25 + TF-IDF + embeddings** (add `enquire-mcp build-embeddings`) → matches Smart Connections-quality retrieval, free / offline / open-source.
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Returns per-signal observability so agents can see WHY each hit ranked:
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```json
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{
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"query": "OAuth flows",
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"method": "rrf",
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"k": 60,
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"signals_used": ["bm25", "tfidf", "embeddings"],
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"total_candidates": 47,
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"matches": [
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{
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"path": "Auth/OAuth Flows.md",
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"score": 0.0492,
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"snippet": "OAuth authentication flow with JWT tokens...",
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"chunk_index": 0,
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"line_start": 1,
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"line_end": 1,
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"per_signal": {
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"bm25": { "rank": 1, "score": 8.5 },
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"tfidf": { "rank": 2, "score": 0.7 },
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"embeddings": { "rank": 1, "score": 0.92 }
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}
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}
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]
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}
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```
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`min_signals` parameter lets agents request consensus search — e.g. `min_signals: 2` returns only hits that ranked in two-or-more rankers.
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### Added — `src/rrf.ts` (isolated RRF math)
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Standalone module implementing Reciprocal Rank Fusion. Pure function over named ranked lists; doesn't know about vaults, SQLite, or embeddings — testable in isolation. 13 unit tests cover the formula, union-safety (missing signals don't penalize), per-signal observability, rank-validation, and graceful degradation.
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### Architecture decisions (locked)
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- **Note-level fusion** (not chunk-level). BM25 + embeddings return chunks; we collapse to the best chunk per note before fusing. Chunk identity comparison would require all rankers to share a chunk space, which TF-IDF (note-level) doesn't. Note-level wins on simplicity and matches what most agents actually want ("which notes are relevant"). Chunk-level fusion is v2.1 backlog.
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- **Hardcoded equal weights, k=60.** Per Cormack et al, RRF without per-signal weights outperforms most learned alternatives on heterogeneous rankers. We resist the urge to add `--rrf-weights` — sensible defaults serve >80% of users; advanced users can fork. Add the flag in v2.1 if real issues come in.
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- **Graceful degradation, not feature gate.** `obsidian_search` works the moment the server starts (TF-IDF only). Adding `--persistent-index` enables BM25. Running `build-embeddings` enables ML retrieval. Each layer adds quality without changing the API or surface.
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- **Per-signal observability is required, not optional.** The `per_signal` field on every hit is the foundation for v2.1 features (UI explainability, weights tuning, ranker disagreement detection). Hidden by default would be cheap; explicit is the right primitive.
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### Tests
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384 unit tests pass (was 364, +20). New: `tests/rrf.test.ts` (13 tests covering RRF math, union-safety, observability, rank validation, custom k, topK truncation, all-empty input). `tests/search-hybrid.test.ts` (7 tests covering graceful-degradation paths, min_signals filter, folder filter, empty query rejection, total_candidates accounting).
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End-to-end ML smoke remains out-of-band; the v2.0 alpha smoke + hybrid path verifies the wiring against synthetic + real vaults.
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### Migration from v2.0.0-alpha.0
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**No breaking changes.** `obsidian_search` is purely additive; the existing `obsidian_search_text`, `obsidian_full_text_search`, `obsidian_semantic_search`, `obsidian_embeddings_search` tools continue to work for diagnostics. The v2.0 RC will likely move them all behind a `--diagnostic-tools` opt-in to declutter the default tool list, but that's not yet decided — feedback welcome on the alpha/beta channel.
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### Try it
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```bash
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npm install -g @oomkapwn/enquire-mcp@beta
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# Or upgrade from alpha:
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# npm install -g @oomkapwn/enquire-mcp@beta
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# Tier 1: TF-IDF only (zero setup)
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enquire-mcp serve --vault ~/Documents/Obsidian\ Vault
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# → obsidian_search { query: "OAuth flows" } ← signals_used: ["tfidf"]
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# Tier 2: + BM25
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enquire-mcp serve --vault ~/Documents/Obsidian\ Vault --persistent-index
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# → obsidian_search { query: "OAuth flows" } ← signals_used: ["bm25","tfidf"]
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# Tier 3: + ML embeddings
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enquire-mcp install-model multilingual
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enquire-mcp build-embeddings --vault ~/Documents/Obsidian\ Vault
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enquire-mcp serve --vault ~/Documents/Obsidian\ Vault --persistent-index
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# → obsidian_search { query: "OAuth flows" } ← signals_used: ["bm25","tfidf","embeddings"]
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```
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## [2.0.0-alpha.0] — 2026-05-06
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**Theme: ML-embedding retrieval.** v1.8 shipped TF-IDF cosine as the no-deps semantic-search floor. v2.0 raises the ceiling with real transformer embeddings — closer to Smart Connections quality, but free, offline-capable, multilingual, and (uniquely) chunk-aligned with the FTS5 BM25 index so the v2.0 beta hybrid RRF can score across both surfaces using the same identifier space.
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## Stop your AI guessing at vault paths.
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**enquire**
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**enquire** turns your **Obsidian** vault into structured, searchable memory for **Claude Code, Cursor, OpenClaw 🦞, Codex**, and any MCP-compatible agent.
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Wikilinks resolved with aliases and sections. Backlinks ranked with snippets. Frontmatter typed. Dataview queries first-class. **Hybrid retrieval** (BM25 + TF-IDF + ML embeddings, fused via Reciprocal Rank Fusion) that catches paraphrases and synonyms the way Smart Connections does — but free, offline-capable, and open-source.
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Read-only by default. No Obsidian plugin required. One command to install.
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[](https://github.com/oomkapwn/enquire-mcp/actions/workflows/ci.yml)
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[](https://www.npmjs.com/package/@oomkapwn/enquire-mcp)
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[](https://www.npmjs.com/package/@oomkapwn/enquire-mcp)
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[](https://www.npmjs.com/package/@oomkapwn/enquire-mcp/v/beta)
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[](./LICENSE)
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[](#develop)
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[](https://modelcontextprotocol.io/)
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### Quick start (30 seconds)
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> **🚧 Two release channels right now.** Stable `npm install … @latest` is **v1.x** (28 tools, no ML embeddings, no hybrid search). The headline `obsidian_search` (BM25 + TF-IDF + ML embeddings via RRF) and `obsidian_embeddings_search` ship under the **`@beta` channel** — opt in with `@oomkapwn/enquire-mcp@beta`. Stable v2.0 promotes once `@beta` proves out.
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```bash
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#
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# Stable (v1.x — 28 tools, hybrid search NOT included):
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claude mcp add --transport stdio obsidian \
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-- npx -y @oomkapwn/enquire-mcp serve --vault ~/path/to/your/vault
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# Beta (v2.0 — adds obsidian_search hybrid + obsidian_embeddings_search):
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claude mcp add --transport stdio obsidian \
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-- npx -y @oomkapwn/enquire-mcp@beta serve --vault ~/path/to/your/vault
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# Cursor / OpenClaw / Codex / others — drop this into your MCP config:
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{
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"mcpServers": {
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"obsidian": {
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"command": "npx",
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"args": ["-y", "@oomkapwn/enquire-mcp", "serve", "--vault", "/path/to/vault"]
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"args": ["-y", "@oomkapwn/enquire-mcp@beta", "serve", "--vault", "/path/to/vault"]
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}
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}
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}
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| **Canvas (`.canvas`) read tools** (`obsidian_list_canvases` + `obsidian_read_canvas` — typed nodes + edges, broken-ref detection) | ❌ rare / partial | ✅ first-class |
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| **Semantic search** (`obsidian_semantic_search` — TF-IDF cosine, free / offline / no model download) | ❌ usually paywalled (Smart Connections) | ✅ in-tree |
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| **ML embeddings search** (`obsidian_embeddings_search` — paraphrase-multilingual-MiniLM-L12-v2, 50+ languages, persistent SQLite vector index) | ❌ usually paywalled (Smart Connections) | ✅ free + offline-capable (v2.0 alpha) |
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| TypeScript strict + Biome lint + 388+ unit tests | varies | ✅ |
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That's the gap. enquire closes it in ~3500 lines of TypeScript with five mandatory runtime dependencies (`@modelcontextprotocol/sdk`, `chokidar`, `commander`, `gray-matter`, `zod`) plus two optional (`better-sqlite3` for `--persistent-index` and `--build-embeddings`; `@huggingface/transformers` for ML embeddings — both are no-ops when not invoked).
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## What you get
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###
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174
|
+
### 24 read tools (always on) + 1 opt-in (`--persistent-index`) — **30 total** with 5 write tools
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175
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|
|
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| Tool | What it does |
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177
|
|---|---|
|
|
@@ -186,6 +196,7 @@ Restart your client. The server logs `enquire <version> ready (read-only, vault=
|
|
|
186
196
|
| `obsidian_open_in_ui` | Returns an `obsidian://open?vault=<v>&file=<f>` URI for hand-off to the running Obsidian desktop app. No filesystem or network side effect — just URI emission. `new_pane=true` opens the note in a split. |
|
|
187
197
|
| `obsidian_list_canvases` | Lists `.canvas` files (Obsidian's whiteboard / mind-map format) with each canvas's node and edge counts. Honors `--exclude-glob` and `--read-paths`. |
|
|
188
198
|
| `obsidian_read_canvas` | Parses one `.canvas` file into typed nodes (text / file / link / group / unknown) + edges (with from/to node IDs, sides, labels, colors). Each `file` node carries a `file_resolved` field (vault-relative path or `null` if broken). Returns a node-kind summary + `broken_file_refs` array. |
|
|
199
|
+
| `obsidian_search` | **The default search tool from v2.0.** Hybrid retrieval via Reciprocal Rank Fusion (Cormack et al, 2009) over BM25 (FTS5) + TF-IDF + ML embeddings. Auto-detects available signals and gracefully degrades — TF-IDF only out of the box, BM25+TF-IDF with `--persistent-index`, full hybrid with `build-embeddings`. Returns per-signal observability so you can see which rankers contributed each hit. Use this instead of the per-ranker tools unless you specifically need single-ranker output for diagnostics. |
|
|
189
200
|
| `obsidian_semantic_search` | **TF-IDF cosine retrieval.** Free / offline / no model download. Tokenizes + TF-IDFs + L2-normalizes every note's body once per session, then ranks notes by cosine similarity to the query. Catches synonym + related-term matches that `obsidian_search_text` (substring) and `obsidian_full_text_search` (BM25) miss. |
|
|
190
201
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| `obsidian_embeddings_search` | _Opt-in via `enquire-mcp install-model` + `enquire-mcp build-embeddings --vault <path>`._ **ML-embedding retrieval** via @huggingface/transformers + paraphrase-multilingual-MiniLM-L12-v2 (50+ languages, 384-dim, runs on CPU). Higher-quality than `obsidian_semantic_search` for paraphrases / synonyms / cross-language queries. Persistent SQLite vector index next to the FTS5 db. Chunks match the FTS5 chunker so v2.0 beta can do hybrid RRF over both. |
|
|
191
202
|
| `obsidian_full_text_search` | _Opt-in via `--persistent-index`._ BM25-ranked full-text search backed by SQLite FTS5 inverted index. Sub-100ms on multi-thousand-note vaults. Hyphenated tokens (`claude-telegram`) auto-quoted. Returns chunk-level hits with `«…»`-bracketed snippets. |
|
package/SECURITY.md
CHANGED
|
@@ -108,7 +108,7 @@ Out of scope:
|
|
|
108
108
|
|
|
109
109
|
## Periodic-Notes plugin config: disk-read posture
|
|
110
110
|
|
|
111
|
-
|
|
111
|
+
The periodic-alias resolver inside `obsidian_read_note` / `obsidian_append_to_note` etc. (added v1.10.0) lazily reads **two files** under the vault's `.obsidian/` directory at first use:
|
|
112
112
|
|
|
113
113
|
1. `.obsidian/daily-notes.json` — the core Daily Notes plugin's settings.
|
|
114
114
|
2. `.obsidian/plugins/periodic-notes/data.json` — the community Periodic Notes plugin's settings.
|
|
@@ -148,6 +148,7 @@ The `obsidian_embeddings_search` tool plus the `install-model` and `build-embedd
|
|
|
148
148
|
- **0600 chmod** on `<vault-hash>.embed.db` + WAL + SHM sidecar files, parent directory mode 0700 — same as the FTS5 index posture.
|
|
149
149
|
- **Cross-vault contamination guard.** `meta` table stores `vault_root`, `model_alias`, `dim`, and `schema_version`; if any change between runs, the embedding tables are dropped and rebuilt with a stderr warning. Prevents a stale index from leaking content into a different vault.
|
|
150
150
|
- **Caveat — embedding values can leak content via cosine.** Float32 vectors stored in the index are reversible-ish: with the same model loaded, an attacker with read access to the .embed.db file can run nearest-neighbor searches against arbitrary queries to recover note content topics. Treat the .embed.db as having the same sensitivity as the .fts5.db (which already stores raw chunk content). If your threat model includes other local users on the same machine, do not use `--persistent-cache` / `--persistent-index` / build-embeddings.
|
|
151
|
+
- **Caveat — silent token truncation.** `paraphrase-multilingual-MiniLM-L12-v2` truncates inputs at 128 tokens; `bge-small-en-v1.5` at 512. The FTS5 chunker produces ~4096-character chunks (~600-1000 tokens), so the multilingual model only sees the first 128 tokens of each chunk. This is a recall ceiling, not a security issue — but it means `obsidian_embeddings_search` may miss content in the tail of long paragraphs. Mitigation: split notes into shorter chunks, or use the `bge` model for longer-context English content. Sub-chunk-level truncation handling is a v2.1 backlog item.
|
|
151
152
|
- **Manual purge.** `enquire-mcp clear-embeddings --vault <path>` removes the `.embed.db`, `.embed.db-wal`, and `.embed.db-shm` files.
|
|
152
153
|
- **`--exclude-glob` / `--read-paths` honored.** The `build-embeddings` subcommand accepts both flags — excluded notes are never embedded, never appear in results.
|
|
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|
|
package/dist/embed-db.d.ts.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"embed-db.d.ts","sourceRoot":"","sources":["../src/embed-db.ts"],"names":[],"mappings":"AAmBA,MAAM,WAAW,cAAc;IAC7B,QAAQ,EAAE,MAAM,CAAC;IACjB,WAAW,EAAE,MAAM,CAAC;IACpB,UAAU,EAAE,MAAM,CAAC;IACnB,QAAQ,EAAE,MAAM,CAAC;IACjB,mDAAmD;IACnD,YAAY,EAAE,MAAM,CAAC;IACrB,0EAA0E;IAC1E,KAAK,EAAE,MAAM,CAAC;CACf;AAED,MAAM,WAAW,eAAe;IAC9B,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;IAChB,SAAS,EAAE,MAAM,CAAC;IAClB,YAAY,EAAE,MAAM,CAAC;CACtB;AAED,UAAU,cAAc;IACtB,QAAQ,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,MAAM,CAAC;CAClB;
|
|
1
|
+
{"version":3,"file":"embed-db.d.ts","sourceRoot":"","sources":["../src/embed-db.ts"],"names":[],"mappings":"AAmBA,MAAM,WAAW,cAAc;IAC7B,QAAQ,EAAE,MAAM,CAAC;IACjB,WAAW,EAAE,MAAM,CAAC;IACpB,UAAU,EAAE,MAAM,CAAC;IACnB,QAAQ,EAAE,MAAM,CAAC;IACjB,mDAAmD;IACnD,YAAY,EAAE,MAAM,CAAC;IACrB,0EAA0E;IAC1E,KAAK,EAAE,MAAM,CAAC;CACf;AAED,MAAM,WAAW,eAAe;IAC9B,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;IAChB,SAAS,EAAE,MAAM,CAAC;IAClB,YAAY,EAAE,MAAM,CAAC;CACtB;AAED,UAAU,cAAc;IACtB,QAAQ,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,MAAM,CAAC;CAClB;AA+CD,MAAM,WAAW,cAAc;IAC7B,2CAA2C;IAC3C,IAAI,EAAE,MAAM,CAAC;IACb,sDAAsD;IACtD,SAAS,EAAE,MAAM,CAAC;IAClB,wEAAwE;IACxE,UAAU,EAAE,MAAM,CAAC;IACnB,oDAAoD;IACpD,GAAG,EAAE,MAAM,CAAC;CACb;AAED,qBAAa,OAAO;IAClB,OAAO,CAAC,EAAE,CAAmB;IAC7B,OAAO,CAAC,QAAQ,CAAC,IAAI,CAAS;IAC9B,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAS;IACnC,OAAO,CAAC,QAAQ,CAAC,UAAU,CAAS;IACpC,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAS;gBAEjB,IAAI,EAAE,cAAc;IAO1B,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC;IAc3B,0DAA0D;IACpD,WAAW,IAAI,OAAO,CAAC,OAAO,CAAC;IAcrC,KAAK,IAAI,IAAI;IAOb,OAAO,CAAC,eAAe;IAqDvB,OAAO,CAAC,QAAQ;IAQhB,OAAO,CAAC,SAAS;IAMjB,OAAO,CAAC,SAAS;IAKjB,yEAAyE;IACzE,UAAU,CACR,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,MAAM,EACf,MAAM,EAAE,aAAa,CAAC;QACpB,UAAU,EAAE,MAAM,CAAC;QACnB,SAAS,EAAE,MAAM,CAAC;QAClB,OAAO,EAAE,MAAM,CAAC;QAChB,WAAW,EAAE,MAAM,CAAC;QACpB,MAAM,EAAE,YAAY,CAAC;KACtB,CAAC,GACD,IAAI;IAiCP,iEAAiE;IACjE,UAAU,CAAC,OAAO,EAAE,MAAM,GAAG,IAAI;IAMjC;oBACgB;IAChB,eAAe,IAAI,cAAc,EAAE;IAKnC;;gDAE4C;IAC5C,MAAM,CAAC,QAAQ,EAAE,YAAY,EAAE,CAAC,EAAE,MAAM,EAAE,IAAI,GAAE;QAAE,MAAM,CAAC,EAAE,MAAM,CAAC;QAAC,QAAQ,CAAC,EAAE,MAAM,CAAA;KAAO,GAAG,cAAc,EAAE;IA4D9G,kDAAkD;IAClD,WAAW,IAAI,MAAM;CAKtB;AAED,8EAA8E;AAC9E,wBAAgB,kBAAkB,CAAC,eAAe,EAAE,MAAM,GAAG,MAAM,CAIlE"}
|
package/dist/embed-db.js
CHANGED
|
@@ -14,6 +14,9 @@
|
|
|
14
14
|
import { promises as fs } from "node:fs";
|
|
15
15
|
import * as path from "node:path";
|
|
16
16
|
const SCHEMA_VERSION = 1;
|
|
17
|
+
// v2.0.0-beta.1 P2 fix: probe the native binding via :memory: open so the
|
|
18
|
+
// "JS package present but *.node binary missing" failure mode produces a
|
|
19
|
+
// clean error pointing at `npm rebuild`, not a raw bindings stack trace.
|
|
17
20
|
let BetterSqliteCtor = null;
|
|
18
21
|
async function loadBetterSqlite() {
|
|
19
22
|
if (BetterSqliteCtor)
|
|
@@ -23,6 +26,13 @@ async function loadBetterSqlite() {
|
|
|
23
26
|
const ctor = mod.default;
|
|
24
27
|
if (!ctor)
|
|
25
28
|
throw new Error("better-sqlite3 has no default export");
|
|
29
|
+
try {
|
|
30
|
+
const probe = new ctor(":memory:");
|
|
31
|
+
probe.close?.();
|
|
32
|
+
}
|
|
33
|
+
catch (probeErr) {
|
|
34
|
+
throw new Error(`better-sqlite3 native binding failed to load (try: \`npm rebuild better-sqlite3\` or reinstall without --omit=optional / --ignore-scripts). ${probeErr instanceof Error ? probeErr.message : String(probeErr)}`);
|
|
35
|
+
}
|
|
26
36
|
BetterSqliteCtor = ctor;
|
|
27
37
|
return ctor;
|
|
28
38
|
}
|
|
@@ -149,13 +159,15 @@ export class EmbedDb {
|
|
|
149
159
|
/** Replace all embeddings for a single note. Caller computes vectors. */
|
|
150
160
|
upsertNote(relPath, mtimeMs, chunks) {
|
|
151
161
|
const db = this.requireDb();
|
|
152
|
-
const
|
|
162
|
+
const dim = this.dim;
|
|
163
|
+
const tx = db.transaction((...args) => {
|
|
164
|
+
const rows = args[0];
|
|
153
165
|
db.prepare("DELETE FROM embeddings WHERE rel_path = ?").run(relPath);
|
|
154
166
|
const insert = db.prepare(`INSERT INTO embeddings (rel_path, chunk_index, line_start, line_end, text_preview, vector)
|
|
155
167
|
VALUES (?, ?, ?, ?, ?, ?)`);
|
|
156
168
|
for (const c of rows) {
|
|
157
|
-
if (c.vector.length !==
|
|
158
|
-
throw new Error(`vector dim mismatch for ${relPath} chunk ${c.chunkIndex}: got ${c.vector.length}, expected ${
|
|
169
|
+
if (c.vector.length !== dim) {
|
|
170
|
+
throw new Error(`vector dim mismatch for ${relPath} chunk ${c.chunkIndex}: got ${c.vector.length}, expected ${dim}`);
|
|
159
171
|
}
|
|
160
172
|
insert.run(relPath, c.chunkIndex, c.lineStart, c.lineEnd, c.textPreview, Buffer.from(c.vector.buffer, c.vector.byteOffset, c.vector.byteLength));
|
|
161
173
|
}
|
|
@@ -186,14 +198,27 @@ export class EmbedDb {
|
|
|
186
198
|
}
|
|
187
199
|
const minScore = opts.minScore ?? -Infinity;
|
|
188
200
|
const folderPrefix = opts.folder ? `${opts.folder.replace(/\/+$/, "")}/` : null;
|
|
201
|
+
// v2.0.0-beta.1 P2 fix: prefix-equality via substr — avoids LIKE pattern
|
|
202
|
+
// semantics so folder names containing `%` / `_` (rare but possible in
|
|
203
|
+
// Obsidian) don't expand into wider matches. Matches the pattern used by
|
|
204
|
+
// FtsIndex.search() in fts5.ts.
|
|
189
205
|
const rows = db
|
|
190
206
|
.prepare(folderPrefix
|
|
191
207
|
? `SELECT rel_path, chunk_index, line_start, line_end, text_preview, vector
|
|
192
|
-
FROM embeddings WHERE rel_path
|
|
208
|
+
FROM embeddings WHERE substr(rel_path, 1, ?) = ?`
|
|
193
209
|
: `SELECT rel_path, chunk_index, line_start, line_end, text_preview, vector FROM embeddings`)
|
|
194
|
-
.all(...(folderPrefix ? [folderPrefix] : []));
|
|
210
|
+
.all(...(folderPrefix ? [folderPrefix.length, folderPrefix] : []));
|
|
211
|
+
const expectedBytes = this.dim * 4; // Float32 = 4 bytes
|
|
195
212
|
const heap = [];
|
|
196
213
|
for (const r of rows) {
|
|
214
|
+
// v2.0.0-beta.1 P2 fix: assert byteLength before wrapping. A truncated
|
|
215
|
+
// / corrupt BLOB (e.g. from an aborted upsert mid-transaction) would
|
|
216
|
+
// produce a Float32Array that reads past the source buffer's end and
|
|
217
|
+
// emits garbage scores. Skip + warn rather than poison results.
|
|
218
|
+
if (r.vector.byteLength !== expectedBytes) {
|
|
219
|
+
process.stderr.write(`enquire: skipping ${r.rel_path}#${r.chunk_index} — vector has ${r.vector.byteLength}B, expected ${expectedBytes}B (dim=${this.dim}). Run \`enquire-mcp clear-embeddings\` and rebuild.\n`);
|
|
220
|
+
continue;
|
|
221
|
+
}
|
|
197
222
|
const vec = new Float32Array(r.vector.buffer, r.vector.byteOffset, this.dim);
|
|
198
223
|
let score = 0;
|
|
199
224
|
for (let i = 0; i < this.dim; i++) {
|
package/dist/embed-db.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
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|
package/dist/fts5.d.ts.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"fts5.d.ts","sourceRoot":"","sources":["../src/fts5.ts"],"names":[],"mappings":"AAwBA,MAAM,MAAM,YAAY,GAAG,WAAW,GAAG,SAAS,CAAC;AAEnD,MAAM,WAAW,YAAY;IAC3B,QAAQ,EAAE,MAAM,CAAC;IACjB,WAAW,EAAE,MAAM,CAAC;IACpB,UAAU,EAAE,MAAM,CAAC;IACnB,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,EAAE,MAAM,CAAC;CACf;AAED,MAAM,WAAW,aAAa;IAC5B,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;IAChB,SAAS,EAAE,MAAM,CAAC;IAClB,YAAY,EAAE,MAAM,CAAC;CACtB;
|
|
1
|
+
{"version":3,"file":"fts5.d.ts","sourceRoot":"","sources":["../src/fts5.ts"],"names":[],"mappings":"AAwBA,MAAM,MAAM,YAAY,GAAG,WAAW,GAAG,SAAS,CAAC;AAEnD,MAAM,WAAW,YAAY;IAC3B,QAAQ,EAAE,MAAM,CAAC;IACjB,WAAW,EAAE,MAAM,CAAC;IACpB,UAAU,EAAE,MAAM,CAAC;IACnB,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,EAAE,MAAM,CAAC;CACf;AAED,MAAM,WAAW,aAAa;IAC5B,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;IAChB,SAAS,EAAE,MAAM,CAAC;IAClB,YAAY,EAAE,MAAM,CAAC;CACtB;AA4DD,qBAAa,QAAQ;IACnB,OAAO,CAAC,EAAE,CAAmB;IAC7B,OAAO,CAAC,QAAQ,CAAC,IAAI,CAAS;IAC9B,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAe;IACxC,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAS;gBAEvB,IAAI,EAAE;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAC;QAAC,QAAQ,CAAC,EAAE,YAAY,CAAA;KAAE;IAMxE,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC;IAiB3B,iEAAiE;IAC3D,WAAW,IAAI,OAAO,CAAC,OAAO,CAAC;IAcrC,KAAK,IAAI,IAAI;IAOb,OAAO,CAAC,eAAe;IAqDvB,OAAO,CAAC,QAAQ;IAQhB,OAAO,CAAC,SAAS;IAMjB,OAAO,CAAC,SAAS;IAKjB;;;;OAIG;IACH,IAAI,CAAC,WAAW,EAAE,KAAK,CAAC;QAAE,OAAO,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,CAAA;KAAE,CAAC,GAAG;QAC9D,KAAK,EAAE,MAAM,EAAE,CAAC;QAChB,OAAO,EAAE,MAAM,EAAE,CAAC;QAClB,OAAO,EAAE,MAAM,EAAE,CAAC;QAClB,SAAS,EAAE,MAAM,EAAE,CAAC;KACrB;IAuBD,oDAAoD;IACpD,QAAQ,CAAC,OAAO,EAAE,MAAM,GAAG,IAAI;IAM/B,wEAAwE;IACxE,WAAW,CACT,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,MAAM,EACf,eAAe,GAAE,MAAM,EAAO,EAC9B,IAAI,GAAE,MAAM,EAAO,GAClB,MAAM;IA2BT,MAAM,CACJ,QAAQ,EAAE,MAAM,EAChB,IAAI,GAAE;QAAE,KAAK,CAAC,EAAE,MAAM,CAAC;QAAC,MAAM,CAAC,EAAE,MAAM,CAAC;QAAC,GAAG,CAAC,EAAE,MAAM,CAAC;QAAC,YAAY,CAAC,EAAE,MAAM,CAAA;KAAO,GAClF,YAAY,EAAE;IAyDjB;;;;;;;OAOG;IACH,QAAQ,CAAC,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG;QAAE,OAAO,EAAE,MAAM,CAAC;QAAC,UAAU,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,MAAM,CAAA;KAAE,GAAG,IAAI;IAQ/G,WAAW,IAAI,MAAM;IAMrB,UAAU,IAAI,MAAM;CAKrB;AAMD,wBAAgB,aAAa,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CAe/C;AAED,UAAU,YAAY;IACpB,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,MAAM,CAAC;CACjB;AAID;;;GAGG;AACH,wBAAgB,YAAY,CAAC,OAAO,EAAE,MAAM,EAAE,QAAQ,SAAkB,GAAG,YAAY,EAAE,CA4CxF;AAuBD,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAM1D"}
|
package/dist/fts5.js
CHANGED
|
@@ -17,6 +17,14 @@ import * as path from "node:path";
|
|
|
17
17
|
const SCHEMA_VERSION = 3;
|
|
18
18
|
// Lazy-loaded better-sqlite3 binding so missing native module surfaces only
|
|
19
19
|
// when --persistent-index is actually used.
|
|
20
|
+
//
|
|
21
|
+
// v2.0.0-beta.1 P2 fix: import-success is not enough. The JS package can
|
|
22
|
+
// resolve while the native `*.node` binding fails to load (e.g. user ran
|
|
23
|
+
// `npm ci --ignore-scripts`, prebuilds are unavailable for their platform,
|
|
24
|
+
// or compile failed). Pre-fix, the user got a raw `bindings` search-path
|
|
25
|
+
// stack trace at first `new Database(...)` call. Now we probe the
|
|
26
|
+
// constructor against `:memory:` once at load time and wrap any failure
|
|
27
|
+
// with the same clean error users get from import failure.
|
|
20
28
|
let BetterSqliteCtor = null;
|
|
21
29
|
async function loadBetterSqlite() {
|
|
22
30
|
if (BetterSqliteCtor)
|
|
@@ -26,6 +34,16 @@ async function loadBetterSqlite() {
|
|
|
26
34
|
const ctor = mod.default;
|
|
27
35
|
if (!ctor)
|
|
28
36
|
throw new Error("better-sqlite3 has no default export");
|
|
37
|
+
// Probe the native binding by opening + closing an in-memory DB. Catches
|
|
38
|
+
// the "JS package present but *.node binary missing" failure mode that a
|
|
39
|
+
// bare import doesn't.
|
|
40
|
+
try {
|
|
41
|
+
const probe = new ctor(":memory:");
|
|
42
|
+
probe.close?.();
|
|
43
|
+
}
|
|
44
|
+
catch (probeErr) {
|
|
45
|
+
throw new Error(`better-sqlite3 native binding failed to load (try: \`npm rebuild better-sqlite3\` or reinstall without --omit=optional / --ignore-scripts). ${probeErr instanceof Error ? probeErr.message : String(probeErr)}`);
|
|
46
|
+
}
|
|
29
47
|
BetterSqliteCtor = ctor;
|
|
30
48
|
return ctor;
|
|
31
49
|
}
|
package/dist/fts5.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
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|
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1
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+
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package/dist/index.d.ts.map
CHANGED
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@@ -1 +1 @@
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|
|
1
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-
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";
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|
1
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+
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