@oomkapwn/enquire-mcp 1.4.0 → 1.6.0

package/dist/tools.d.ts.map

@@ -1 +1 @@
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package/dist/tools.js

@@ -1043,6 +1043,408 @@ export async function getVaultStats(vault, args) {
         generated_at: new Date().toISOString()
     };
 }
+export async function lintWiki(vault, args) {
+    await vault.ensureExists();
+    const stubThreshold = args.stub_word_threshold ?? 100;
+    const staleDays = args.stale_days ?? 365;
+    const conceptMinMentions = args.concept_min_mentions ?? 3;
+    const cap = args.max_per_bucket ?? 50;
+    const entries = await vault.listMarkdown(args.folder);
+    const allEntries = await vault.listMarkdown();
+    const staleMs = Date.now() - staleDays * 24 * 3600 * 1000;
+    // Single pass: collect inbound counts, outbound presence, broken links,
+    // word counts, last-reviewed times, capitalised-phrase mentions.
+    const inbound = new Map();
+    const outboundPresence = new Set();
+    const broken = [];
+    const stubs = [];
+    const stale = [];
+    const titleSet = new Set();
+    for (const e of allEntries)
+        titleSet.add(stripMd(e.basename).toLowerCase());
+    // Capitalised-phrase mentions across the whole vault. A phrase is 1-3
+    // CapitalCase tokens (e.g. "Reinforcement Learning", "Attention Heads").
+    // Stop-words: dropped when they appear at the start of a phrase.
+    const conceptStopwords = new Set([
+        "The",
+        "A",
+        "An",
+        "This",
+        "That",
+        "These",
+        "Those",
+        "If",
+        "When",
+        "While",
+        "But",
+        "And",
+        "Or"
+    ]);
+    const capPhraseRe = /\b((?:[A-Z][a-z][a-z]+(?:\s+[A-Z][a-z][a-z]+){0,2}))\b/g;
+    const conceptMentions = new Map(); // phrase → set of source paths
+    for (const e of entries) {
+        const { content, parsed, mtimeMs } = await vault.readNote(e.absPath, e.mtimeMs);
+        // Outbound + broken pass.
+        if (parsed.wikilinks.length > 0)
+            outboundPresence.add(e.relPath);
+        for (const link of parsed.wikilinks) {
+            const m = findBestMatch(allEntries, link.target, e.relPath);
+            if (m) {
+                inbound.set(m.relPath, (inbound.get(m.relPath) ?? 0) + 1);
+            }
+            else if (broken.length < cap) {
+                broken.push({
+                    kind: "broken-link",
+                    path: e.relPath,
+                    message: `[[${link.target}]] in ${e.relPath} doesn't resolve`,
+                    suggestion: "create the missing note, fix the link, or remove it",
+                    details: { target: link.target, raw: link.raw }
+                });
+            }
+        }
+        // Stub pass.
+        const wordCount = parsed.body.trim() ? parsed.body.trim().split(/\s+/).length : 0;
+        if (wordCount < stubThreshold && stubs.length < cap) {
+            stubs.push({
+                kind: "stub",
+                path: e.relPath,
+                message: `${e.relPath} is ${wordCount} words (threshold ${stubThreshold})`,
+                suggestion: "develop, merge into a hub, or archive",
+                details: { word_count: wordCount, mtime: new Date(mtimeMs).toISOString() }
+            });
+        }
+        // Stale pass — frontmatter `last_reviewed` overrides mtime if present.
+        // gray-matter (js-yaml) parses ISO dates into Date objects automatically,
+        // so we accept Date | string | number.
+        const lastReviewedRaw = parsed.frontmatter?.last_reviewed ?? parsed.frontmatter?.["last-reviewed"];
+        let lastTouchedMs = mtimeMs;
+        if (lastReviewedRaw instanceof Date) {
+            const t = lastReviewedRaw.getTime();
+            if (Number.isFinite(t))
+                lastTouchedMs = t;
+        }
+        else if (typeof lastReviewedRaw === "string") {
+            const t = Date.parse(lastReviewedRaw);
+            if (Number.isFinite(t))
+                lastTouchedMs = t;
+        }
+        else if (typeof lastReviewedRaw === "number" && Number.isFinite(lastReviewedRaw)) {
+            lastTouchedMs = lastReviewedRaw;
+        }
+        if (lastTouchedMs < staleMs && stale.length < cap) {
+            stale.push({
+                kind: "stale",
+                path: e.relPath,
+                message: `${e.relPath} not touched since ${new Date(lastTouchedMs).toISOString().slice(0, 10)}`,
+                suggestion: "review for accuracy or archive",
+                details: {
+                    last_touched: new Date(lastTouchedMs).toISOString(),
+                    source: lastReviewedRaw !== undefined ? "frontmatter.last_reviewed" : "mtime"
+                }
+            });
+        }
+        // Concept-mention pass — capitalised phrases in the body that aren't
+        // already a wikilink target. Cap at 30 unique phrases per source to
+        // bound memory, but loose enough that real concepts in long notes don't
+        // get truncated.
+        const seenInThisNote = new Set();
+        for (const m of parsed.body.matchAll(capPhraseRe)) {
+            const phrase = m[1];
+            if (!phrase)
+                continue;
+            const firstWord = phrase.split(/\s+/)[0];
+            if (firstWord !== undefined && conceptStopwords.has(firstWord))
+                continue;
+            if (seenInThisNote.has(phrase))
+                continue;
+            if (seenInThisNote.size >= 30)
+                break;
+            // Skip phrases that are already a vault note (basename match).
+            if (titleSet.has(phrase.toLowerCase()))
+                continue;
+            seenInThisNote.add(phrase);
+            const set = conceptMentions.get(phrase) ?? new Set();
+            set.add(e.relPath);
+            conceptMentions.set(phrase, set);
+        }
+    }
+    // Orphan findings (no inbound AND no outbound).
+    const orphans = [];
+    for (const e of entries) {
+        if (orphans.length >= cap)
+            break;
+        if (!inbound.get(e.relPath) && !outboundPresence.has(e.relPath)) {
+            orphans.push({
+                kind: "orphan",
+                path: e.relPath,
+                message: `${e.relPath} has no inbound or outbound wikilinks`,
+                suggestion: "link from a hub note, archive, or delete",
+                details: { mtime: new Date(e.mtimeMs).toISOString() }
+            });
+        }
+    }
+    // Concept candidates — phrases mentioned by ≥ N distinct notes.
+    const conceptCandidates = [];
+    const ranked = [...conceptMentions.entries()]
+        .filter(([, sources]) => sources.size >= conceptMinMentions)
+        .sort((a, b) => b[1].size - a[1].size);
+    for (const [phrase, sources] of ranked) {
+        if (conceptCandidates.length >= cap)
+            break;
+        conceptCandidates.push({
+            kind: "concept-without-page",
+            message: `"${phrase}" is mentioned by ${sources.size} notes but has no page of its own`,
+            suggestion: `create a page \`${phrase}.md\` and refile the most-developed mentions into it`,
+            details: { phrase, mention_count: sources.size, sources: [...sources].slice(0, 5) }
+        });
+    }
+    return {
+        scope: args.folder ?? "(whole vault)",
+        scanned: entries.length,
+        generated_at: new Date().toISOString(),
+        summary: {
+            orphans: orphans.length,
+            broken_links: broken.length,
+            stubs: stubs.length,
+            stale: stale.length,
+            concept_candidates: conceptCandidates.length
+        },
+        findings: {
+            orphans,
+            broken_links: broken,
+            stubs,
+            stale,
+            concept_candidates: conceptCandidates
+        }
+    };
+}
+export async function getOpenQuestions(vault, args) {
+    await vault.ensureExists();
+    const limit = args.limit ?? 100;
+    // Default pattern: "Open question:" / "Open question -" / "Q:" / "TODO?" / "??"
+    // followed by space + question text. Anchored at line start (with optional
+    // list-bullet / quote / heading prefix).
+    // Default pattern matches deferred-thinking markers at line start (with
+    // optional list-bullet / quote / heading prefix). Single-line `i` flag —
+    // we apply it line-by-line below.
+    const defaultPat = "^\\s*(?:[#\\->\\*\\d\\.]+\\s+)?(?:open\\s+question|q|todo\\?|\\?\\?)\\s*[:\\-]?\\s*(.+)$";
+    const re = new RegExp(args.pattern ?? defaultPat, "i");
+    const entries = await vault.listMarkdown(args.folder);
+    const out = [];
+    const now = Date.now();
+    for (const e of entries) {
+        if (out.length >= limit)
+            break;
+        const { parsed, mtimeMs } = await vault.readNote(e.absPath, e.mtimeMs);
+        // Scan parsed.body so frontmatter lines (which can contain "Q:" -ish
+        // tokens) don't pollute results.
+        const lines = parsed.body.split("\n");
+        let currentHeading = null;
+        for (let i = 0; i < lines.length; i++) {
+            const line = lines[i] ?? "";
+            const headingMatch = /^(#{1,6})\s+(.+?)\s*#*\s*$/.exec(line);
+            if (headingMatch?.[2]) {
+                currentHeading = headingMatch[2];
+                // A heading line itself isn't a question hit — skip the regex match.
+                continue;
+            }
+            const m = re.exec(line);
+            if (!m || !m[1])
+                continue;
+            out.push({
+                question: m[1].trim(),
+                source_path: e.relPath,
+                source_title: stripMd(e.basename),
+                context_heading: currentHeading,
+                line: i + 1,
+                age_days: Math.round((now - mtimeMs) / (24 * 3600 * 1000)),
+                mtime: new Date(mtimeMs).toISOString()
+            });
+            if (out.length >= limit)
+                break;
+        }
+    }
+    // Sort oldest-first so things aging out surface first.
+    out.sort((a, b) => b.age_days - a.age_days);
+    return out;
+}
+export async function paperAudit(vault, args) {
+    await vault.ensureExists();
+    const tag = (args.tag ?? "paper").replace(/^#+/, "").toLowerCase();
+    const limit = args.limit ?? 100;
+    const entries = await vault.listMarkdown(args.folder);
+    const arxivRe = /\barxiv[:\s]*([0-9]{4}\.[0-9]{4,5}(?:v\d+)?)\b/gi;
+    const doiRe = /\bdoi[:\s]*(10\.\d{4,9}\/[\w\-._;()/:]+)/gi;
+    const urlRe = /\bhttps?:\/\/[^\s<>")\]]+/g;
+    let scanned = 0;
+    const flagged = [];
+    for (const e of entries) {
+        if (flagged.length >= limit)
+            break;
+        const { content, parsed } = await vault.readNote(e.absPath, e.mtimeMs);
+        const tagsLower = parsed.tags.map((t) => t.toLowerCase());
+        if (!tagsLower.includes(tag))
+            continue;
+        scanned += 1;
+        const fm = parsed.frontmatter ?? {};
+        const fmKeys = new Set(Object.keys(fm).map((k) => k.toLowerCase()));
+        const hasFmCitation = fmKeys.has("arxiv") || fmKeys.has("doi") || fmKeys.has("url") || fmKeys.has("isbn");
+        // Scan parsed.body so the frontmatter's own arxiv/doi keys don't get
+        // re-detected as "found in body".
+        const body = parsed.body;
+        const arxivIds = [...body.matchAll(arxivRe)].map((m) => m[1]).filter((v) => !!v);
+        const doiIds = [...body.matchAll(doiRe)].map((m) => m[1]).filter((v) => !!v);
+        const urls = [...body.matchAll(urlRe)].map((m) => m[0]);
+        const foundInBody = {
+            arxiv: [...new Set(arxivIds)],
+            doi: [...new Set(doiIds)],
+            url: [...new Set(urls)].slice(0, 3)
+        };
+        const bodyHasAnyId = foundInBody.arxiv.length > 0 || foundInBody.doi.length > 0 || foundInBody.url.length > 0;
+        // Clean ⇒ has a frontmatter citation. The body might cite OTHER papers,
+        // but this note itself is properly identified.
+        if (hasFmCitation)
+            continue;
+        let proposed = null;
+        if (bodyHasAnyId) {
+            proposed = {};
+            if (foundInBody.arxiv[0])
+                proposed.arxiv = foundInBody.arxiv[0];
+            if (foundInBody.doi[0])
+                proposed.doi = foundInBody.doi[0];
+            if (foundInBody.url[0] && !proposed.arxiv && !proposed.doi)
+                proposed.url = foundInBody.url[0];
+        }
+        const msg = bodyHasAnyId
+            ? `${e.relPath} has identifiers in body (${[
+                ...foundInBody.arxiv.map((v) => `arxiv:${v}`),
+                ...foundInBody.doi.map((v) => `doi:${v}`)
+            ]
+                .slice(0, 2)
+                .join(", ")}) but missing frontmatter`
+            : `${e.relPath} has #${tag} but no arxiv/doi/url anywhere — citation missing`;
+        flagged.push({
+            path: e.relPath,
+            title: stripMd(e.basename),
+            has_frontmatter_citation: hasFmCitation,
+            found_in_body: foundInBody,
+            proposed_frontmatter_patch: proposed,
+            message: msg
+        });
+    }
+    return { scanned, flagged };
+}
+export async function findPath(vault, args) {
+    await vault.ensureExists();
+    const maxDepth = args.max_depth ?? 5;
+    const includeAlts = args.include_alternatives === true;
+    const followEmbeds = args.follow_embeds !== false;
+    const fromArgs = {};
+    if (args.from !== undefined)
+        fromArgs.path = args.from;
+    else if (args.from_title !== undefined)
+        fromArgs.title = args.from_title;
+    const fromEntry = await resolveTarget(vault, fromArgs);
+    const toArgs = {};
+    if (args.to !== undefined)
+        toArgs.path = args.to;
+    else if (args.to_title !== undefined)
+        toArgs.title = args.to_title;
+    const toEntry = await resolveTarget(vault, toArgs);
+    if (fromEntry.absPath === toEntry.absPath) {
+        return {
+            from: fromEntry.relPath,
+            to: toEntry.relPath,
+            found: true,
+            hops: 0,
+            path: [{ path: fromEntry.relPath, title: stripMd(fromEntry.basename), via: "" }]
+        };
+    }
+    const entries = await vault.listMarkdown();
+    const visited = new Set([fromEntry.relPath]);
+    let frontier = [
+        { rel: fromEntry.relPath, trail: [{ path: fromEntry.relPath, title: stripMd(fromEntry.basename), via: "" }] }
+    ];
+    const found = [];
+    let foundDepth = -1;
+    for (let depth = 0; depth < maxDepth && frontier.length > 0; depth++) {
+        const next = [];
+        for (const node of frontier) {
+            const entry = entries.find((e) => e.relPath === node.rel);
+            if (!entry)
+                continue;
+            const { parsed } = await vault.readNote(entry.absPath, entry.mtimeMs);
+            const links = followEmbeds ? [...parsed.wikilinks, ...parsed.embeds] : parsed.wikilinks;
+            for (const link of links) {
+                const m = findBestMatch(entries, link.target, entry.relPath);
+                if (!m)
+                    continue;
+                if (visited.has(m.relPath) && m.absPath !== toEntry.absPath)
+                    continue;
+                const newTrail = [...node.trail, { path: m.relPath, title: stripMd(m.basename), via: link.raw }];
+                if (m.absPath === toEntry.absPath) {
+                    if (foundDepth === -1)
+                        foundDepth = depth + 1;
+                    if (foundDepth === depth + 1) {
+                        found.push(newTrail);
+                        if (!includeAlts) {
+                            return {
+                                from: fromEntry.relPath,
+                                to: toEntry.relPath,
+                                found: true,
+                                hops: foundDepth,
+                                path: newTrail
+                            };
+                        }
+                    }
+                }
+                else {
+                    visited.add(m.relPath);
+                    next.push({ rel: m.relPath, trail: newTrail });
+                }
+            }
+        }
+        if (foundDepth !== -1 && depth + 1 === foundDepth)
+            break;
+        frontier = next;
+    }
+    if (found.length > 0) {
+        found.sort((a, b) => a.length - b.length || (a[0]?.path ?? "").localeCompare(b[0]?.path ?? ""));
+        const first = found[0];
+        if (!first) {
+            return { from: fromEntry.relPath, to: toEntry.relPath, found: false, hops: -1, path: [] };
+        }
+        const result = {
+            from: fromEntry.relPath,
+            to: toEntry.relPath,
+            found: true,
+            hops: foundDepth,
+            path: first
+        };
+        if (includeAlts)
+            result.alternatives = found.slice(0, 10);
+        return result;
+    }
+    return { from: fromEntry.relPath, to: toEntry.relPath, found: false, hops: -1, path: [] };
+}
+export async function openInUi(vault, args) {
+    await vault.ensureExists();
+    const target = await resolveTarget(vault, args);
+    // Vault name = leaf of the vault root path. obsidian:// matches by name OR
+    // by the file's absolute path; if the user opened the vault from a
+    // different name in Obsidian, the file argument still resolves correctly.
+    const vaultName = path.basename(vault.root);
+    const noteRel = stripMd(target.relPath);
+    const params = new URLSearchParams({ vault: vaultName, file: noteRel });
+    if (args.new_pane)
+        params.set("newpane", "true");
+    return {
+        uri: `obsidian://open?${params.toString()}`,
+        vault_name: vaultName,
+        path: target.relPath,
+        title: stripMd(target.basename)
+    };
+}
 // ─── small set / string helpers shared by find_similar / get_note_neighbors ─
 function jaccard(a, b) {
     if (a.size === 0 && b.size === 0)