@oneshot-agent/mcp-server 0.50.0 → 0.52.0

package/dist/tools/predict-schema.generated.d.ts

@@ -3,7 +3,7 @@ export declare const predictInputSchema: {
     readonly properties: {
         readonly model: {
             readonly type: "string";
-            readonly enum: readonly ["simulation", "forecast"];
+            readonly enum: readonly ["simulation", "forecast", "alignment"];
         };
         readonly time_limit_s: {
             readonly default: 20;
@@ -268,8 +268,43 @@ export declare const predictInputSchema: {
             readonly required: readonly ["series", "horizon"];
             readonly additionalProperties: false;
         };
+        readonly alignment: {
+            readonly type: "object";
+            readonly properties: {
+                readonly mode: {
+                    readonly type: "string";
+                    readonly enum: readonly ["pairwise", "search"];
+                };
+                readonly sequence_type: {
+                    readonly default: "auto";
+                    readonly type: "string";
+                    readonly enum: readonly ["auto", "protein", "nucleotide"];
+                };
+                readonly sequences: {
+                    readonly minItems: 1;
+                    readonly maxItems: 50;
+                    readonly type: "array";
+                    readonly items: {
+                        readonly type: "object";
+                        readonly properties: {
+                            readonly id: {
+                                readonly type: "string";
+                                readonly minLength: 1;
+                                readonly maxLength: 128;
+                            };
+                            readonly sequence: {
+                                readonly type: "string";
+                            };
+                        };
+                        readonly required: readonly ["id", "sequence"];
+                        readonly additionalProperties: false;
+                    };
+                };
+            };
+            readonly required: readonly ["mode", "sequences"];
+            readonly additionalProperties: false;
+        };
     };
     readonly required: readonly ["model"];
     readonly additionalProperties: false;
-    readonly $schema: "http://json-schema.org/draft-07/schema#";
 };

package/dist/tools/predict-schema.generated.js

@@ -6,7 +6,8 @@ export const predictInputSchema = {
             "type": "string",
             "enum": [
                 "simulation",
-                "forecast"
+                "forecast",
+                "alignment"
             ]
         },
         "time_limit_s": {
@@ -341,11 +342,59 @@ export const predictInputSchema = {
                 "horizon"
             ],
             "additionalProperties": false
+        },
+        "alignment": {
+            "type": "object",
+            "properties": {
+                "mode": {
+                    "type": "string",
+                    "enum": [
+                        "pairwise",
+                        "search"
+                    ]
+                },
+                "sequence_type": {
+                    "default": "auto",
+                    "type": "string",
+                    "enum": [
+                        "auto",
+                        "protein",
+                        "nucleotide"
+                    ]
+                },
+                "sequences": {
+                    "minItems": 1,
+                    "maxItems": 50,
+                    "type": "array",
+                    "items": {
+                        "type": "object",
+                        "properties": {
+                            "id": {
+                                "type": "string",
+                                "minLength": 1,
+                                "maxLength": 128
+                            },
+                            "sequence": {
+                                "type": "string"
+                            }
+                        },
+                        "required": [
+                            "id",
+                            "sequence"
+                        ],
+                        "additionalProperties": false
+                    }
+                }
+            },
+            "required": [
+                "mode",
+                "sequences"
+            ],
+            "additionalProperties": false
         }
     },
     "required": [
         "model"
     ],
-    "additionalProperties": false,
-    "$schema": "http://json-schema.org/draft-07/schema#"
+    "additionalProperties": false
 };

package/dist/tools/predict.d.ts

@@ -1,4 +1,4 @@
 import type { Tool } from '@modelcontextprotocol/sdk/types.js';
 import type { OneShot } from '@oneshot-agent/sdk';
 export declare const predictTool: Tool;
-export declare function handlePredict(agent: OneShot, args: Record<string, unknown>): Promise<import("@oneshot-agent/sdk").PredictPendingResult | import("@oneshot-agent/sdk").PredictSimulationResult | import("@oneshot-agent/sdk").PredictForecastResult>;
+export declare function handlePredict(agent: OneShot, args: Record<string, unknown>): Promise<import("@oneshot-agent/sdk").PredictPendingResult | import("@oneshot-agent/sdk").PredictSimulationResult | import("@oneshot-agent/sdk").PredictForecastResult | import("@oneshot-agent/sdk").PredictAlignmentResult>;

package/dist/tools/predict.js

@@ -1,7 +1,7 @@
 import { predictInputSchema } from './predict-schema.generated.js';
 export const predictTool = {
     name: 'oneshot_predict',
-    description: 'Predict outcomes with uncertainty and consistency checks. Supported models: simulation (named distributions and arithmetic outputs, returning means, medians and percentiles) and forecast (time series projected ahead with prediction intervals). Provide the matching model block.',
+    description: 'Predict outcomes with uncertainty and consistency checks. Supported models: simulation (named distributions and arithmetic outputs, returning means, medians and percentiles), forecast (time series projected ahead with prediction intervals) and alignment (local sequence comparison across the supplied sequences, returning matched regions with identity, coverage and significance). Provide the matching model block.',
     inputSchema: JSON.parse(JSON.stringify(predictInputSchema)),
 };
 export async function handlePredict(agent, args) {

package/dist/tools/solve-schema.generated.d.ts

@@ -535,16 +535,11 @@ export declare const solveInputSchema: {
                     readonly type: "array";
                     readonly items: {
                         readonly type: "array";
-                        readonly items: readonly [{
+                        readonly items: {
                             readonly type: "string";
                             readonly minLength: 1;
                             readonly pattern: "^(?:[^\\u0000\\uD800-\\uDFFF]|[\\uD800-\\uDBFF][\\uDC00-\\uDFFF])*$";
-                        }, {
-                            readonly type: "string";
-                            readonly minLength: 1;
-                            readonly pattern: "^(?:[^\\u0000\\uD800-\\uDFFF]|[\\uD800-\\uDBFF][\\uDC00-\\uDFFF])*$";
-                        }];
-                        readonly additionalItems: false;
+                        };
                         readonly minItems: 2;
                         readonly maxItems: 2;
                     };
@@ -698,5 +693,4 @@ export declare const solveInputSchema: {
     };
     readonly required: readonly ["problem"];
     readonly additionalProperties: false;
-    readonly $schema: "http://json-schema.org/draft-07/schema#";
 };

package/dist/tools/solve-schema.generated.js

@@ -625,19 +625,11 @@ export const solveInputSchema = {
                     "type": "array",
                     "items": {
                         "type": "array",
-                        "items": [
-                            {
-                                "type": "string",
-                                "minLength": 1,
-                                "pattern": "^(?:[^\\u0000\\uD800-\\uDFFF]|[\\uD800-\\uDBFF][\\uDC00-\\uDFFF])*$"
-                            },
-                            {
-                                "type": "string",
-                                "minLength": 1,
-                                "pattern": "^(?:[^\\u0000\\uD800-\\uDFFF]|[\\uD800-\\uDBFF][\\uDC00-\\uDFFF])*$"
-                            }
-                        ],
-                        "additionalItems": false,
+                        "items": {
+                            "type": "string",
+                            "minLength": 1,
+                            "pattern": "^(?:[^\\u0000\\uD800-\\uDFFF]|[\\uD800-\\uDBFF][\\uDC00-\\uDFFF])*$"
+                        },
                         "minItems": 2,
                         "maxItems": 2
                     }
@@ -817,6 +809,5 @@ export const solveInputSchema = {
     "required": [
         "problem"
     ],
-    "additionalProperties": false,
-    "$schema": "http://json-schema.org/draft-07/schema#"
+    "additionalProperties": false
 };

package/dist/tools/untrusted-tools.generated.js

@@ -7,7 +7,14 @@ export const UNTRUSTED_TOOLS = new Set([
     "business_health_inspections",
     "business_liquor_license",
     "business_resolve",
+    "calls",
+    "calls_get",
+    "calls_list",
     "changes",
+    "client_work",
+    "client_work_clients",
+    "client_work_items",
+    "client_work_timesheets",
     "commerce/product_find",
     "commerce/search",
     "company_adviser_registration",
@@ -18,11 +25,13 @@ export const UNTRUSTED_TOOLS = new Set([
     "company_domain_registration",
     "company_dossier",
     "company_environmental_compliance",
+    "company_export_restrictions",
     "company_fda_registration",
     "company_federal_awards",
     "company_filings",
     "company_financials",
     "company_find",
+    "company_fund_holdings",
     "company_health_provider",
     "company_insider_trades",
     "company_legal_identifier",
@@ -32,13 +41,22 @@ export const UNTRUSTED_TOOLS = new Set([
     "company_nonprofit_status",
     "company_private_raises",
     "company_profile",
+    "company_radio_licenses",
     "company_sanctions",
     "company_sba_loans",
     "company_vat_registration",
+    "company_visa_sponsorship",
     "compound_hazards",
     "compound_properties",
     "compound_resolve",
     "compound_targets",
+    "crm_activity",
+    "crm_tickets",
+    "field_service",
+    "field_service_clients",
+    "field_service_invoices",
+    "field_service_jobs",
+    "field_service_quotes",
     "files",
     "files_read",
     "files_search",
@@ -67,9 +85,16 @@ export const UNTRUSTED_TOOLS = new Set([
     "market_medicare_drug_spending",
     "market_medicare_fees",
     "market_truck_rates",
+    "matters",
+    "matters_calendar",
+    "matters_contacts",
+    "matters_documents",
+    "matters_list",
+    "matters_time",
     "meetings",
     "meetings_get",
     "meetings_list",
+    "organism_resolve",
     "person_articles",
     "person_dossier",
     "person_email",
@@ -105,6 +130,17 @@ export const UNTRUSTED_TOOLS = new Set([
     "place_tropical_cyclones",
     "place_weather_alerts",
     "place_wildfires",
+    "portfolio",
+    "portfolio_entities",
+    "portfolio_holdings",
+    "portfolio_performance",
+    "portfolio_transactions",
+    "practice",
+    "practice_appointments",
+    "practice_openings",
+    "practice_patients",
+    "practice_providers",
+    "practice_treatment_plans",
     "product_cosmetic_adverse_events",
     "product_device_adverse_events",
     "product_device_clearances",
@@ -178,6 +214,7 @@ export const UNTRUSTED_TOOLS = new Set([
     "research/market_medicare_drug_spending",
     "research/market_medicare_fees",
     "research/market_truck_rates",
+    "research/organism_resolve",
     "research/person_articles",
     "research/person_dossier",
     "research/person_email",
@@ -278,7 +315,18 @@ export const UNTRUSTED_ROUTES = [
     ["GET", "/v1/tools/voice/inbound"],
     ["GET", "/v1/tools/voice/inbound/:id"],
     ["POST", "/v1/tools/browser"],
+    ["POST", "/v1/tools/calls/get"],
+    ["POST", "/v1/tools/calls/list"],
     ["POST", "/v1/tools/changes"],
+    ["POST", "/v1/tools/client_work/clients"],
+    ["POST", "/v1/tools/client_work/items"],
+    ["POST", "/v1/tools/client_work/timesheets"],
+    ["POST", "/v1/tools/crm/activity"],
+    ["POST", "/v1/tools/crm/tickets"],
+    ["POST", "/v1/tools/field_service/clients"],
+    ["POST", "/v1/tools/field_service/invoices"],
+    ["POST", "/v1/tools/field_service/jobs"],
+    ["POST", "/v1/tools/field_service/quotes"],
     ["POST", "/v1/tools/files/read"],
     ["POST", "/v1/tools/files/search"],
     ["POST", "/v1/tools/find/business"],
@@ -305,10 +353,12 @@ export const UNTRUSTED_ROUTES = [
     ["POST", "/v1/tools/lookup/company-domain-registration"],
     ["POST", "/v1/tools/lookup/company-dossier"],
     ["POST", "/v1/tools/lookup/company-environmental-compliance"],
+    ["POST", "/v1/tools/lookup/company-export-restrictions"],
     ["POST", "/v1/tools/lookup/company-fda-registration"],
     ["POST", "/v1/tools/lookup/company-federal-awards"],
     ["POST", "/v1/tools/lookup/company-filings"],
     ["POST", "/v1/tools/lookup/company-financials"],
+    ["POST", "/v1/tools/lookup/company-fund-holdings"],
     ["POST", "/v1/tools/lookup/company-health-provider"],
     ["POST", "/v1/tools/lookup/company-insider-trades"],
     ["POST", "/v1/tools/lookup/company-legal-identifier"],
@@ -318,9 +368,11 @@ export const UNTRUSTED_ROUTES = [
     ["POST", "/v1/tools/lookup/company-nonprofit-status"],
     ["POST", "/v1/tools/lookup/company-private-raises"],
     ["POST", "/v1/tools/lookup/company-profile"],
+    ["POST", "/v1/tools/lookup/company-radio-licenses"],
     ["POST", "/v1/tools/lookup/company-sanctions"],
     ["POST", "/v1/tools/lookup/company-sba-loans"],
     ["POST", "/v1/tools/lookup/company-vat-registration"],
+    ["POST", "/v1/tools/lookup/company-visa-sponsorship"],
     ["POST", "/v1/tools/lookup/compound-hazards"],
     ["POST", "/v1/tools/lookup/compound-properties"],
     ["POST", "/v1/tools/lookup/compound-targets"],
@@ -396,12 +448,27 @@ export const UNTRUSTED_ROUTES = [
     ["POST", "/v1/tools/lookup/vehicle-recalls"],
     ["POST", "/v1/tools/mailbox/attachment"],
     ["POST", "/v1/tools/mailbox/messages"],
+    ["POST", "/v1/tools/matters/calendar"],
+    ["POST", "/v1/tools/matters/contacts"],
+    ["POST", "/v1/tools/matters/documents"],
+    ["POST", "/v1/tools/matters/list"],
+    ["POST", "/v1/tools/matters/time"],
     ["POST", "/v1/tools/meetings/get"],
     ["POST", "/v1/tools/meetings/list"],
+    ["POST", "/v1/tools/portfolio/entities"],
+    ["POST", "/v1/tools/portfolio/holdings"],
+    ["POST", "/v1/tools/portfolio/performance"],
+    ["POST", "/v1/tools/portfolio/transactions"],
+    ["POST", "/v1/tools/practice/appointments"],
+    ["POST", "/v1/tools/practice/openings"],
+    ["POST", "/v1/tools/practice/patients"],
+    ["POST", "/v1/tools/practice/providers"],
+    ["POST", "/v1/tools/practice/treatment-plans"],
     ["POST", "/v1/tools/research"],
     ["POST", "/v1/tools/resolve/business"],
     ["POST", "/v1/tools/resolve/compound"],
     ["POST", "/v1/tools/resolve/gene"],
+    ["POST", "/v1/tools/resolve/organism"],
     ["POST", "/v1/tools/resolve/place"],
     ["POST", "/v1/tools/resolve/protein"],
     ["POST", "/v1/tools/resolve/variant"],

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@oneshot-agent/mcp-server",
-  "version": "0.50.0",
-  "description": "MCP server for OneShot - 233 tools for AI agents",
+  "version": "0.52.0",
+  "description": "MCP server for OneShot - 263 tools for AI agents",
   "type": "module",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
@@ -26,7 +26,7 @@
   "dependencies": {
     "@coinbase/cdp-sdk": "1.45.0",
     "@modelcontextprotocol/sdk": "1.32.2",
-    "@oneshot-agent/sdk": "^0.62.0",
+    "@oneshot-agent/sdk": "^0.64.0",
     "zod": "4.6.7"
   },
   "devDependencies": {