@onebrain-ai/cli 2.0.8 → 2.0.10

package/dist/onebrain

@@ -9571,7 +9571,7 @@ async function syncPluginFiles(extractedDir, vaultRoot, unlinkFn = unlink) {
   return { filesAdded, filesRemoved };
 }
 async function copyRootDocs(extractedDir, vaultRoot) {
-  const docs = ["README.md", "CONTRIBUTING.md", "CHANGELOG.md"];
+  const docs = ["README.md", "CONTRIBUTING.md", "CHANGELOG.md", "PLUGIN-CHANGELOG.md"];
   for (const doc of docs) {
     const srcPath = join3(extractedDir, doc);
     const destPath = join3(vaultRoot, doc);
@@ -10002,53 +10002,52 @@ function applyHooks(settings) {
       result[event] = "ok";
     } else if (presence === "migrate") {
       for (const group of groups) {
+        if (group.matcher === undefined)
+          group.matcher = "";
         for (const entry of group.hooks ?? []) {
           if ((entry.command ?? "").includes("checkpoint-hook.sh")) {
             entry.command = cmd;
+            if (!entry.type)
+              entry.type = "command";
           }
         }
       }
       result[event] = "migrated";
     } else {
-      groups.push({ hooks: [{ command: cmd }] });
+      groups.push({ matcher: "", hooks: [{ type: "command", command: cmd }] });
       result[event] = "added";
     }
   }
   return result;
 }
-function applyPath(settings) {
-  if (!settings.env)
-    settings.env = {};
-  const existing = settings.env.PATH ?? "";
-  const parts = existing ? existing.split(":") : [];
-  const bunForms = [BUN_BIN, "$HOME/.bun/bin", "${HOME}/.bun/bin", "~/.bun/bin"];
-  const npmForms = [
-    NPM_GLOBAL_BIN,
-    "$HOME/.npm-global/bin",
-    "${HOME}/.npm-global/bin",
-    "~/.npm-global/bin"
-  ];
-  const missing = [];
-  if (!bunForms.some((f2) => parts.includes(f2)))
-    missing.push(BUN_BIN);
-  if (!npmForms.some((f2) => parts.includes(f2)))
-    missing.push(NPM_GLOBAL_BIN);
-  if (missing.length === 0)
+function applyQmdHook(settings) {
+  if (!settings.hooks)
+    settings.hooks = {};
+  if (!settings.hooks["PostToolUse"])
+    settings.hooks["PostToolUse"] = [];
+  const groups = settings.hooks["PostToolUse"];
+  const already = groups.some((g) => g.hooks?.some((h2) => h2.command === QMD_CMD));
+  if (already)
     return "ok";
-  const base = existing || "${PATH}";
-  const hasPlaceholder = base.includes("${PATH}");
-  if (hasPlaceholder) {
-    const withoutPlaceholder = base.replace("${PATH}", "").replace(/:+$/, "").replace(/^:+/, "");
-    const allParts = [
-      ...missing,
-      ...withoutPlaceholder ? withoutPlaceholder.split(":").filter(Boolean) : [],
-      "${PATH}"
-    ];
-    settings.env.PATH = allParts.join(":");
+  groups.push({ matcher: QMD_MATCHER, hooks: [{ type: "command", command: QMD_CMD }] });
+  return "added";
+}
+function removeQmdHook(settings) {
+  if (!settings.hooks?.["PostToolUse"])
+    return "ok";
+  const before = settings.hooks["PostToolUse"].length;
+  const filtered = settings.hooks["PostToolUse"].filter((g) => !g.hooks?.some((h2) => (h2.command ?? "").includes("qmd-reindex")));
+  if (filtered.length === 0) {
+    const remaining = {};
+    for (const [key, val] of Object.entries(settings.hooks)) {
+      if (key !== "PostToolUse")
+        remaining[key] = val;
+    }
+    settings.hooks = remaining;
   } else {
-    settings.env.PATH = [...missing, base].join(":");
+    settings.hooks["PostToolUse"] = filtered;
   }
-  return "updated";
+  return before !== filtered.length ? "removed" : "ok";
 }
 function applyPermissions(settings) {
   if (!settings.permissions)
@@ -10118,7 +10117,6 @@ async function runRegisterHooks(opts = {}) {
   const result = {
     ok: false,
     hooks: {},
-    pathStatus: "ok",
     permissionsAdded: []
   };
   const settingsPath = join4(vaultRoot, ".claude", "settings.json");
@@ -10148,19 +10146,17 @@ async function runRegisterHooks(opts = {}) {
     } else {
       const hookLine = HOOK_EVENTS.map((e2) => {
         const status = result.hooks[e2];
-        const label = status === "ok" || status === "added" || status === "migrated" || status === "found" ? "ok" : status ?? "ok";
+        const label = status === "ok" || status === "added" || status === "migrated" ? "ok" : status ?? "ok";
         return `${e2} ${label}`;
       }).join("  ");
       note(hookLine);
     }
-    const pathSpinner = isTTY ? L2() : null;
-    pathSpinner?.start("Registering PATH...");
-    result.pathStatus = applyPath(settings);
-    pathSpinner?.stop("PATH registered");
-    if (isTTY) {
-      note("env.PATH in .claude/settings.json: ✓");
-    } else {
-      note("PATH ok");
+    if (opts.removeQmd) {
+      const status = removeQmdHook(settings);
+      note(status === "removed" ? "PostToolUse qmd hook removed" : "PostToolUse qmd hook not found");
+    } else if (opts.qmd) {
+      const status = applyQmdHook(settings);
+      note(status === "added" ? "PostToolUse qmd: added" : "PostToolUse qmd: already registered");
     }
     const permSpinner = isTTY ? L2() : null;
     permSpinner?.start("Updating permissions...");
@@ -10194,30 +10190,30 @@ async function runRegisterHooks(opts = {}) {
   }
   return result;
 }
-async function registerHooksCommand(vaultDir) {
-  const result = await runRegisterHooks(vaultDir !== undefined ? { vaultDir } : {});
+async function registerHooksCommand(vaultDir, flags) {
+  const result = await runRegisterHooks({
+    ...vaultDir !== undefined ? { vaultDir } : {},
+    ...flags
+  });
   if (!result.ok) {
     process.exit(1);
   }
 }
-var HOOK_COMMANDS, HOOK_EVENTS, PERMISSIONS_TO_ADD, BUN_BIN, NPM_GLOBAL_BIN, ONEBRAIN_MARKER = "# onebrain", PATH_EXPORT = 'export PATH="$HOME/.bun/bin:$HOME/.npm-global/bin:$PATH"';
+var HOOK_COMMANDS, HOOK_EVENTS, PERMISSIONS_TO_ADD, ONEBRAIN_MARKER = "# onebrain", PATH_EXPORT = 'export PATH="$HOME/.bun/bin:$HOME/.npm-global/bin:$PATH"', QMD_CMD = "onebrain qmd-reindex", QMD_MATCHER = "Write|Edit";
 var init_register_hooks = __esm(() => {
   init_dist2();
   init_dist3();
   HOOK_COMMANDS = {
     Stop: "onebrain checkpoint stop",
     PreCompact: "onebrain checkpoint precompact",
-    PostCompact: "onebrain checkpoint postcompact",
-    SessionStart: "onebrain session-init"
+    PostCompact: "onebrain checkpoint postcompact"
   };
-  HOOK_EVENTS = ["Stop", "PreCompact", "PostCompact", "SessionStart"];
+  HOOK_EVENTS = ["Stop", "PreCompact", "PostCompact"];
   PERMISSIONS_TO_ADD = [
     "Bash(onebrain *)",
     "Bash(bun install -g @onebrain-ai/cli*)",
     "Bash(npm install -g @onebrain-ai/cli*)"
   ];
-  BUN_BIN = join4(homedir2(), ".bun", "bin");
-  NPM_GLOBAL_BIN = join4(homedir2(), ".npm-global", "bin");
 });
 
 // src/index.ts
@@ -10494,11 +10490,11 @@ async function checkQmdEmbeddings(config) {
     };
   }
 }
-async function checkVersionDrift(vaultRoot, config, binaryVersion) {
+async function checkVersionDrift(vaultRoot, config) {
   const pluginJsonPath = join2(vaultRoot, ".claude", "plugins", "onebrain", ".claude-plugin", "plugin.json");
   const pluginFile = Bun.file(pluginJsonPath);
   const exists = await pluginFile.exists();
-  const compareVersion = binaryVersion ?? config.onebrain_version;
+  const compareVersion = config.onebrain_version;
   if (!compareVersion || !exists) {
     return {
       check: "version-drift",
@@ -10532,11 +10528,10 @@ async function checkVersionDrift(vaultRoot, config, binaryVersion) {
       message: `v${compareVersion}`
     };
   }
-  const driftMessage = binaryVersion ? `binary v${binaryVersion}, plugin files v${pluginVersion}` : `vault v${compareVersion}, plugin files v${pluginVersion}`;
   return {
     check: "version-drift",
     status: "warn",
-    message: driftMessage,
+    message: `vault v${compareVersion}, plugin files v${pluginVersion}`,
     hint: "Run onebrain update to sync"
   };
 }
@@ -10629,7 +10624,6 @@ function checkSandbox(config) {
 async function runDoctor(opts = {}) {
   const vaultDir = opts.vaultDir ?? process.cwd();
   const isTTY = opts.isTTY ?? process.stdout.isTTY ?? false;
-  const binaryVersion = opts.binaryVersion;
   const checkVaultYmlFn = opts.checkVaultYmlFn ?? checkVaultYml;
   const loadVaultConfigFn = opts.loadVaultConfigFn ?? loadVaultConfig;
   const checkFoldersFn = opts.checkFoldersFn ?? checkFolders;
@@ -10676,7 +10670,7 @@ async function runDoctor(opts = {}) {
       checkFoldersFn(vaultDir, config),
       checkHarnessBinaryFn(config),
       checkQmdEmbeddingsFn(config),
-      checkVersionDriftFn(vaultDir, config, binaryVersion),
+      checkVersionDriftFn(vaultDir, config),
       checkOrphanCheckpointsFn(vaultDir, config),
       checkSandboxFn(config)
     ]);
@@ -10788,7 +10782,7 @@ init_dist3();
 import { mkdir as mkdir3, readFile as readFile3, rename as rename3, stat as stat3, writeFile as writeFile3 } from "node:fs/promises";
 import { homedir as homedir3 } from "node:os";
 import { dirname as dirname3, join as join5 } from "node:path";
-var binaryVersion = "2.0.8";
+var binaryVersion = "2.0.10";
 var STANDARD_FOLDERS = [
   "00-inbox",
   "01-projects",
@@ -11292,7 +11286,7 @@ async function listMdFiles(dir) {
     return [];
   }
 }
-async function runBackfillRecapped(logsFolder) {
+async function runBackfillRecapped(logsFolder, cutoffDate) {
   const today = new Date().toISOString().slice(0, 10);
   let backfilled = 0;
   let skipped = 0;
@@ -11318,6 +11312,12 @@ async function runBackfillRecapped(logsFolder) {
         if (fname.includes("-checkpoint-")) {
           continue;
         }
+        if (cutoffDate) {
+          const dateMatch = fname.match(/^(\d{4}-\d{2}-\d{2})/);
+          if (dateMatch?.[1] !== undefined && dateMatch[1] > cutoffDate) {
+            continue;
+          }
+        }
         try {
           const content = await readFile4(fpath, "utf8");
           const parsed = parseFrontmatterWithRest(content);
@@ -11348,13 +11348,13 @@ ${rest}`;
   }
   return { backfilled, skipped };
 }
-async function migrateCommand(migrationName) {
+async function migrateCommand(migrationName, cutoffDate) {
   try {
     const vaultRoot = process.cwd();
     const config = await loadVaultConfig(vaultRoot);
     const logsFolder = join7(vaultRoot, config.folders.logs);
     if (migrationName === "backfill-recapped") {
-      const result = await runBackfillRecapped(logsFolder);
+      const result = await runBackfillRecapped(logsFolder, cutoffDate);
       process.stdout.write(`backfilled: ${result.backfilled} files, skipped: ${result.skipped}
 `);
     } else {
@@ -11512,17 +11512,14 @@ import { dirname as dirname4, join as join9 } from "node:path";
 var HOOK_COMMANDS2 = {
   Stop: "onebrain checkpoint stop",
   PreCompact: "onebrain checkpoint precompact",
-  PostCompact: "onebrain checkpoint postcompact",
-  SessionStart: "onebrain session-init"
+  PostCompact: "onebrain checkpoint postcompact"
 };
-var HOOK_EVENTS2 = ["Stop", "PreCompact", "PostCompact", "SessionStart"];
+var HOOK_EVENTS2 = ["Stop", "PreCompact", "PostCompact"];
 var PERMISSIONS_TO_ADD2 = [
   "Bash(onebrain *)",
   "Bash(bun install -g @onebrain-ai/cli*)",
   "Bash(npm install -g @onebrain-ai/cli*)"
 ];
-var BUN_BIN2 = join9(homedir4(), ".bun", "bin");
-var NPM_GLOBAL_BIN2 = join9(homedir4(), ".npm-global", "bin");
 var ONEBRAIN_MARKER2 = "# onebrain";
 var PATH_EXPORT2 = 'export PATH="$HOME/.bun/bin:$HOME/.npm-global/bin:$PATH"';
 async function readSettings2(settingsPath) {
@@ -11571,53 +11568,54 @@ function applyHooks2(settings) {
       result[event] = "ok";
     } else if (presence === "migrate") {
       for (const group of groups) {
+        if (group.matcher === undefined)
+          group.matcher = "";
         for (const entry of group.hooks ?? []) {
           if ((entry.command ?? "").includes("checkpoint-hook.sh")) {
             entry.command = cmd;
+            if (!entry.type)
+              entry.type = "command";
           }
         }
       }
       result[event] = "migrated";
     } else {
-      groups.push({ hooks: [{ command: cmd }] });
+      groups.push({ matcher: "", hooks: [{ type: "command", command: cmd }] });
       result[event] = "added";
     }
   }
   return result;
 }
-function applyPath2(settings) {
-  if (!settings.env)
-    settings.env = {};
-  const existing = settings.env.PATH ?? "";
-  const parts = existing ? existing.split(":") : [];
-  const bunForms = [BUN_BIN2, "$HOME/.bun/bin", "${HOME}/.bun/bin", "~/.bun/bin"];
-  const npmForms = [
-    NPM_GLOBAL_BIN2,
-    "$HOME/.npm-global/bin",
-    "${HOME}/.npm-global/bin",
-    "~/.npm-global/bin"
-  ];
-  const missing = [];
-  if (!bunForms.some((f2) => parts.includes(f2)))
-    missing.push(BUN_BIN2);
-  if (!npmForms.some((f2) => parts.includes(f2)))
-    missing.push(NPM_GLOBAL_BIN2);
-  if (missing.length === 0)
+var QMD_CMD2 = "onebrain qmd-reindex";
+var QMD_MATCHER2 = "Write|Edit";
+function applyQmdHook2(settings) {
+  if (!settings.hooks)
+    settings.hooks = {};
+  if (!settings.hooks["PostToolUse"])
+    settings.hooks["PostToolUse"] = [];
+  const groups = settings.hooks["PostToolUse"];
+  const already = groups.some((g) => g.hooks?.some((h2) => h2.command === QMD_CMD2));
+  if (already)
     return "ok";
-  const base = existing || "${PATH}";
-  const hasPlaceholder = base.includes("${PATH}");
-  if (hasPlaceholder) {
-    const withoutPlaceholder = base.replace("${PATH}", "").replace(/:+$/, "").replace(/^:+/, "");
-    const allParts = [
-      ...missing,
-      ...withoutPlaceholder ? withoutPlaceholder.split(":").filter(Boolean) : [],
-      "${PATH}"
-    ];
-    settings.env.PATH = allParts.join(":");
+  groups.push({ matcher: QMD_MATCHER2, hooks: [{ type: "command", command: QMD_CMD2 }] });
+  return "added";
+}
+function removeQmdHook2(settings) {
+  if (!settings.hooks?.["PostToolUse"])
+    return "ok";
+  const before = settings.hooks["PostToolUse"].length;
+  const filtered = settings.hooks["PostToolUse"].filter((g) => !g.hooks?.some((h2) => (h2.command ?? "").includes("qmd-reindex")));
+  if (filtered.length === 0) {
+    const remaining = {};
+    for (const [key, val] of Object.entries(settings.hooks)) {
+      if (key !== "PostToolUse")
+        remaining[key] = val;
+    }
+    settings.hooks = remaining;
   } else {
-    settings.env.PATH = [...missing, base].join(":");
+    settings.hooks["PostToolUse"] = filtered;
   }
-  return "updated";
+  return before !== filtered.length ? "removed" : "ok";
 }
 function applyPermissions2(settings) {
   if (!settings.permissions)
@@ -11687,7 +11685,6 @@ async function runRegisterHooks2(opts = {}) {
   const result = {
     ok: false,
     hooks: {},
-    pathStatus: "ok",
     permissionsAdded: []
   };
   const settingsPath = join9(vaultRoot, ".claude", "settings.json");
@@ -11717,19 +11714,17 @@ async function runRegisterHooks2(opts = {}) {
     } else {
       const hookLine = HOOK_EVENTS2.map((e2) => {
         const status = result.hooks[e2];
-        const label = status === "ok" || status === "added" || status === "migrated" || status === "found" ? "ok" : status ?? "ok";
+        const label = status === "ok" || status === "added" || status === "migrated" ? "ok" : status ?? "ok";
         return `${e2} ${label}`;
       }).join("  ");
       note(hookLine);
     }
-    const pathSpinner = isTTY ? L2() : null;
-    pathSpinner?.start("Registering PATH...");
-    result.pathStatus = applyPath2(settings);
-    pathSpinner?.stop("PATH registered");
-    if (isTTY) {
-      note("env.PATH in .claude/settings.json: ✓");
-    } else {
-      note("PATH ok");
+    if (opts.removeQmd) {
+      const status = removeQmdHook2(settings);
+      note(status === "removed" ? "PostToolUse qmd hook removed" : "PostToolUse qmd hook not found");
+    } else if (opts.qmd) {
+      const status = applyQmdHook2(settings);
+      note(status === "added" ? "PostToolUse qmd: added" : "PostToolUse qmd: already registered");
     }
     const permSpinner = isTTY ? L2() : null;
     permSpinner?.start("Updating permissions...");
@@ -11763,8 +11758,11 @@ async function runRegisterHooks2(opts = {}) {
   }
   return result;
 }
-async function registerHooksCommand2(vaultDir) {
-  const result = await runRegisterHooks2(vaultDir !== undefined ? { vaultDir } : {});
+async function registerHooksCommand2(vaultDir, flags) {
+  const result = await runRegisterHooks2({
+    ...vaultDir !== undefined ? { vaultDir } : {},
+    ...flags
+  });
   if (!result.ok) {
     process.exit(1);
   }
@@ -12041,7 +12039,7 @@ async function syncPluginFiles2(extractedDir, vaultRoot, unlinkFn = unlink3) {
   return { filesAdded, filesRemoved };
 }
 async function copyRootDocs2(extractedDir, vaultRoot) {
-  const docs = ["README.md", "CONTRIBUTING.md", "CHANGELOG.md"];
+  const docs = ["README.md", "CONTRIBUTING.md", "CHANGELOG.md", "PLUGIN-CHANGELOG.md"];
   for (const doc of docs) {
     const srcPath = join11(extractedDir, doc);
     const destPath = join11(vaultRoot, doc);
@@ -12666,7 +12664,7 @@ async function updateCommand(opts = {}) {
 }
 
 // src/index.ts
-var VERSION = "2.0.8";
+var VERSION = "2.0.10";
 var RELEASE_DATE = "2026-04-26";
 process.stdout.setDefaultEncoding("utf8");
 process.stderr.setDefaultEncoding("utf8");
@@ -12707,7 +12705,7 @@ program2.command("update").description("Update OneBrain plugin files from GitHub
 });
 program2.command("doctor").description("Run vault health checks and report issues").action(async () => {
   const vaultRoot = findVaultRoot(process.cwd());
-  await doctorCommand({ vaultDir: vaultRoot, binaryVersion: VERSION });
+  await doctorCommand({ vaultDir: vaultRoot });
 });
 program2.command("help").description("Show this help message").action(() => {
   program2.help();
@@ -12732,10 +12730,13 @@ program2.command("vault-sync", { hidden: true }).description("Sync plugin files
   const root = vaultRoot ?? process.cwd();
   await vaultSyncCommand2(root, opts.branch !== undefined ? { branch: opts.branch } : {});
 });
-program2.command("register-hooks", { hidden: true }).description("Install Claude Code hooks into settings.json").option("--vault-dir <path>", "vault root directory (default: cwd)").action(async (opts) => {
-  await registerHooksCommand2(opts.vaultDir);
+program2.command("register-hooks", { hidden: true }).description("Install Claude Code hooks into settings.json").option("--vault-dir <path>", "vault root directory (default: cwd)").option("--qmd", "also register PostToolUse qmd-reindex hook").option("--remove-qmd", "remove PostToolUse qmd-reindex hook").action(async (opts) => {
+  await registerHooksCommand2(opts.vaultDir, {
+    ...opts.qmd !== undefined ? { qmd: opts.qmd } : {},
+    ...opts.removeQmd !== undefined ? { removeQmd: opts.removeQmd } : {}
+  });
 });
-program2.command("migrate", { hidden: true }).description("Run one-time migration scripts").argument("<name>", "migration name: backfill-recapped").action(async (name) => {
-  await migrateCommand(name);
+program2.command("migrate", { hidden: true }).description("Run one-time migration scripts").argument("<name>", "migration name: backfill-recapped").argument("[cutoff_date]", "ISO date cutoff (YYYY-MM-DD) \u2014 skip logs newer than this date").action(async (name, cutoffDate) => {
+  await migrateCommand(name, cutoffDate);
 });
 program2.parse(process.argv);

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@onebrain-ai/cli",
-  "version": "2.0.8",
+  "version": "2.0.10",
   "description": "CLI for OneBrain — personal AI OS for Obsidian with persistent memory, 24+ skills, and Claude Code integration",
   "keywords": [
     "onebrain",