@oml/owl 0.12.0 → 0.14.0

package/out/owl/owl-shacl.js

@@ -18,7 +18,15 @@ const SH_PATH = 'http://www.w3.org/ns/shacl#path';
 const SH_PROPERTY = 'http://www.w3.org/ns/shacl#property';
 const SH_TARGET_CLASS = 'http://www.w3.org/ns/shacl#targetClass';
 const SH_TARGET_NODE = 'http://www.w3.org/ns/shacl#targetNode';
-const OML_ENTAILED = 'http://opencaesar.io/oml#entailed';
+const SH_ALTERNATIVE_PATH = 'http://www.w3.org/ns/shacl#alternativePath';
+const SH_INVERSE_PATH = 'http://www.w3.org/ns/shacl#inversePath';
+const SH_ZERO_OR_MORE_PATH = 'http://www.w3.org/ns/shacl#zeroOrMorePath';
+const SH_ONE_OR_MORE_PATH = 'http://www.w3.org/ns/shacl#oneOrMorePath';
+const SH_ZERO_OR_ONE_PATH = 'http://www.w3.org/ns/shacl#zeroOrOnePath';
+const DASH_READ_ONLY = 'http://datashapes.org/dash#readOnly';
+const RDF_FIRST = 'http://www.w3.org/1999/02/22-rdf-syntax-ns#first';
+const RDF_REST = 'http://www.w3.org/1999/02/22-rdf-syntax-ns#rest';
+const RDF_NIL = 'http://www.w3.org/1999/02/22-rdf-syntax-ns#nil';
 export class ShaclService {
     constructor(sparqlService, prepareContext, resolveContextIri) {
         this.sparqlService = sparqlService;
@@ -26,13 +34,6 @@ export class ShaclService {
         this.resolveContextIri = resolveContextIri;
     }
     async validateShacl(modelUri, shaclSource) {
-        if (!modelUri) {
-            return {
-                conforms: false,
-                issues: [],
-                error: 'No contextUri model is available for this markdown document.',
-            };
-        }
         const trimmedSource = stripShaclFrontMatter(shaclSource).trim();
         if (!trimmedSource) {
             return {
@@ -61,8 +62,8 @@ export class ShaclService {
             };
         }
         await this.prepareContext(modelUri);
-        const contextIri = this.resolveContextIri(modelUri);
-        const constructResult = await this.sparqlService.construct(modelUri, buildValidationConstructQuery(contextIri));
+        const contextOntologyIri = this.resolveContextIri(modelUri);
+        const constructResult = await this.sparqlService.construct(modelUri, buildValidationConstructQuery(contextOntologyIri));
         if (!constructResult.success) {
             return {
                 conforms: false,
@@ -122,8 +123,15 @@ export function registerShaclValidationRequests(connection, oml) {
                 error: 'Reasoning service validation is unavailable.',
             };
         }
-        const modelUri = typeof params?.modelUri === 'string' ? params.modelUri : undefined;
-        const shaclSource = typeof params?.shaclSource === 'string' ? params.shaclSource : '';
+        const modelUri = typeof params?.modelUri === 'string' ? params.modelUri.trim() : '';
+        const shaclSource = typeof params?.shacl === 'string' ? params.shacl : '';
+        if (!modelUri) {
+            return {
+                conforms: false,
+                issues: [],
+                error: 'Missing modelUri.',
+            };
+        }
         const shaclService = createDefaultShaclService(reasoningService.getSparqlService(), (uri) => reasoningService.ensureQueryContext(uri), (uri) => reasoningService.getContextIri(uri));
         return shaclService.validateShacl(modelUri, shaclSource);
     });
@@ -143,13 +151,14 @@ export function deriveSelectQueryFromShacl(shaclSource, graphIri) {
     }
     const usedNames = new Set(['focus']);
     const variables = nodeShape.columns.map((column) => {
-        const base = normalizeSparqlVariableName(column.name || localName(column.path) || 'value');
+        const base = normalizeSparqlVariableName(column.name || column.pathVariableHint || 'value');
         const unique = uniqueVariableName(base, usedNames);
         usedNames.add(unique);
         const sourceVariable = uniqueVariableName(`__${unique}`, usedNames);
         usedNames.add(sourceVariable);
         return {
             path: column.path,
+            readOnly: column.readOnly,
             variable: unique,
             sourceVariable,
             name: column.name,
@@ -161,9 +170,7 @@ export function deriveSelectQueryFromShacl(shaclSource, graphIri) {
     ].join(' ');
     const whereLines = [];
     const graphLines = [];
-    const graphPattern = (pattern) => nodeShape.includeEntailments
-        ? `{ GRAPH <${escapeIriForSparql(graphIri)}> { ${pattern} } } UNION { GRAPH <${escapeIriForSparql(`${graphIri}__entailments`)}> { ${pattern} } }`
-        : `GRAPH <${escapeIriForSparql(graphIri)}> { ${pattern} }`;
+    const graphPattern = (pattern) => `GRAPH <${escapeIriForSparql(graphIri)}> { ${pattern} }`;
     if (nodeShape.targetClasses.length > 0) {
         const values = nodeShape.targetClasses.map((term) => `<${term.value}>`).join(' ');
         whereLines.push(`  VALUES ?__targetClass { ${values} }`);
@@ -174,7 +181,13 @@ export function deriveSelectQueryFromShacl(shaclSource, graphIri) {
         whereLines.push(`  VALUES ?focus { ${values} }`);
     }
     for (const entry of variables) {
-        graphLines.push(`    OPTIONAL { ${graphPattern(`?focus <${entry.path}> ?${entry.sourceVariable} .`)} }`);
+        const pattern = `?focus ${entry.path} ?${entry.sourceVariable} .`;
+        if (entry.readOnly) {
+            graphLines.push(`    OPTIONAL { ${pattern} }`);
+        }
+        else {
+            graphLines.push(`    OPTIONAL { ${graphPattern(pattern)} }`);
+        }
     }
     whereLines.push(...graphLines);
     const columnVariables = ['focus', ...variables.map((entry) => entry.variable)];
@@ -194,7 +207,7 @@ export function deriveSelectQueryFromShacl(shaclSource, graphIri) {
         columnLabels,
     };
 }
-function buildValidationConstructQuery(contextIri) {
+function buildValidationConstructQuery(contextOntologyIri) {
     return [
         'CONSTRUCT {',
         '  ?s ?p ?o .',
@@ -202,11 +215,11 @@ function buildValidationConstructQuery(contextIri) {
         '  ?o a ?oType .',
         '}',
         'WHERE {',
-        `  GRAPH <${contextIri}> { ?s ?p ?o }`,
-        `  OPTIONAL { GRAPH ?g1 { ?s a ?sType } FILTER(?g1 != <${contextIri}>) }`,
+        `  GRAPH <${contextOntologyIri}> { ?s ?p ?o }`,
+        `  OPTIONAL { GRAPH ?g1 { ?s a ?sType } FILTER(?g1 != <${contextOntologyIri}>) }`,
         '  OPTIONAL {',
         '    FILTER(isIRI(?o) || isBlank(?o))',
-        `    GRAPH ?g2 { ?o a ?oType } FILTER(?g2 != <${contextIri}>)`,
+        `    GRAPH ?g2 { ?o a ?oType } FILTER(?g2 != <${contextOntologyIri}>)`,
         '  }',
         '}',
     ].join('\n');
@@ -229,23 +242,26 @@ function parsePrimaryNodeShape(shapeQuads) {
             .filter((term) => !isDeactivatedShape(shapesStore, term))
             .map((term) => {
             const path = getFirstObject(shapesStore, term, SH_PATH);
-            if (!path || path.termType !== 'NamedNode') {
+            if (!path) {
+                return undefined;
+            }
+            const parsedPath = parseShaclPathToSparql(shapesStore, path);
+            if (!parsedPath) {
                 return undefined;
             }
             const nameTerm = getFirstObject(shapesStore, term, SH_NAME);
             return {
-                path: path.value,
+                path: parsedPath.sparql,
+                pathVariableHint: parsedPath.variableHint,
+                readOnly: isReadOnlyShape(shapesStore, term),
                 name: nameTerm && nameTerm.termType === 'Literal' ? nameTerm.value : undefined,
             };
         })
             .filter((column) => Boolean(column));
-        const includeEntailments = getObjects(shapesStore, shapeTerm, SH_PROPERTY)
-            .some((term) => isEntailedShape(shapesStore, term));
         return {
             targetClasses,
             targetNodes,
             columns,
-            includeEntailments,
         };
     }
     return undefined;
@@ -276,8 +292,8 @@ function isDeactivatedShape(store, subject) {
 function isTruthyLiteral(term) {
     return term?.termType === 'Literal' && (term.value === 'true' || term.value === '1');
 }
-function isEntailedShape(store, subject) {
-    return getObjects(store, subject, OML_ENTAILED).some((term) => isTruthyLiteral(term));
+function isReadOnlyShape(store, subject) {
+    return getObjects(store, subject, DASH_READ_ONLY).some((term) => isTruthyLiteral(term));
 }
 function getObjects(store, subject, predicateIri) {
     return [...store.getQuads(subject, DataFactory.namedNode(predicateIri), null, null)].map((quad) => quad.object);
@@ -422,4 +438,114 @@ function localName(iri) {
 function escapeIriForSparql(iri) {
     return iri.replace(/>/g, '\\>');
 }
+function parseShaclPathToSparql(store, term) {
+    if (term.termType === 'NamedNode') {
+        return {
+            sparql: `<${term.value}>`,
+            variableHint: localName(term.value),
+        };
+    }
+    const sequence = parseRdfList(store, term);
+    if (sequence && sequence.length > 0) {
+        const parts = sequence
+            .map((entry) => parseShaclPathToSparql(store, entry))
+            .filter((entry) => Boolean(entry));
+        if (parts.length !== sequence.length) {
+            return undefined;
+        }
+        return {
+            sparql: parts.map((entry) => wrapPath(entry.sparql)).join('/'),
+            variableHint: parts[parts.length - 1]?.variableHint ?? 'value',
+        };
+    }
+    if (term.termType !== 'BlankNode') {
+        return undefined;
+    }
+    const alternativePath = getFirstObject(store, term, SH_ALTERNATIVE_PATH);
+    if (alternativePath) {
+        const options = parseRdfList(store, alternativePath);
+        if (!options || options.length === 0) {
+            return undefined;
+        }
+        const parts = options
+            .map((entry) => parseShaclPathToSparql(store, entry))
+            .filter((entry) => Boolean(entry));
+        if (parts.length !== options.length) {
+            return undefined;
+        }
+        const hintParts = [...new Set(parts.map((entry) => entry.variableHint).filter(Boolean))];
+        return {
+            sparql: parts.map((entry) => wrapPath(entry.sparql)).join('|'),
+            variableHint: hintParts.length > 0 ? hintParts.join('_or_') : 'value',
+        };
+    }
+    const inversePath = getFirstObject(store, term, SH_INVERSE_PATH);
+    if (inversePath) {
+        const parsed = parseShaclPathToSparql(store, inversePath);
+        if (!parsed) {
+            return undefined;
+        }
+        return {
+            sparql: `^${wrapPath(parsed.sparql)}`,
+            variableHint: parsed.variableHint,
+        };
+    }
+    const quantified = [
+        { predicate: SH_ZERO_OR_MORE_PATH, quantifier: '*' },
+        { predicate: SH_ONE_OR_MORE_PATH, quantifier: '+' },
+        { predicate: SH_ZERO_OR_ONE_PATH, quantifier: '?' },
+    ];
+    for (const entry of quantified) {
+        const target = getFirstObject(store, term, entry.predicate);
+        if (!target) {
+            continue;
+        }
+        const parsed = parseShaclPathToSparql(store, target);
+        if (!parsed) {
+            return undefined;
+        }
+        return {
+            sparql: `${wrapPath(parsed.sparql)}${entry.quantifier}`,
+            variableHint: parsed.variableHint,
+        };
+    }
+    return undefined;
+}
+function parseRdfList(store, term) {
+    if (term.termType !== 'BlankNode' && term.termType !== 'NamedNode') {
+        return undefined;
+    }
+    if (term.termType === 'NamedNode' && term.value === RDF_NIL) {
+        return [];
+    }
+    const visited = new Set();
+    const items = [];
+    let current = term;
+    while (true) {
+        if (current.termType === 'NamedNode' && current.value === RDF_NIL) {
+            return items;
+        }
+        const key = termKey(current);
+        if (!key || visited.has(key)) {
+            return undefined;
+        }
+        visited.add(key);
+        const head = getFirstObject(store, current, RDF_FIRST);
+        const tail = getFirstObject(store, current, RDF_REST);
+        if (!head || !tail) {
+            return undefined;
+        }
+        items.push(head);
+        current = tail;
+    }
+}
+function wrapPath(path) {
+    if (!path || /^<[^>]+>$/.test(path)) {
+        return path;
+    }
+    if (/^\^[^|/*+?]+$/.test(path)) {
+        return path;
+    }
+    return `(${path})`;
+}
 //# sourceMappingURL=owl-shacl.js.map

package/out/owl/owl-shacl.js.map

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package/out/owl/owl-sparql.d.ts

@@ -27,6 +27,8 @@ export interface AskResult {
     warnings: string[];
     error?: string;
 }
+export type SparqlQueryKind = 'select' | 'ask' | 'construct' | 'describe' | 'unknown';
+export declare function detectSparqlKind(sparql: string): SparqlQueryKind;
 export type DerivedShapeSelectQuery = DerivedShaclSelectQuery;
 export declare const deriveSelectQueryFromShape: typeof deriveSelectQueryFromShacl;
 export declare class SparqlService {
@@ -37,7 +39,9 @@ export declare class SparqlService {
     private readonly engine;
     private readonly filteredStoreCache;
     private readonly dirtyFilteredStores;
-    constructor(reasoningStore: OwlStore, importGraph: OwlImportGraph, aboxEntailmentCache: OwlABoxEntailmentState, reasoningService: OwlInferenceRunner);
+    private ontologyIriResolver;
+    constructor(reasoningStore: OwlStore, importGraph: OwlImportGraph, aboxEntailmentCache: OwlABoxEntailmentState, reasoningService: OwlInferenceRunner, resolveOntologyIriForModelUri?: (modelUri: string) => string);
+    setOntologyIriResolver(resolver: (modelUri: string) => string): void;
     /**
      * Executes a SPARQL query over the model's reasoned context.
      * Queries must use explicit GRAPH patterns to access data.
@@ -62,6 +66,7 @@ export declare class SparqlService {
     private ensureFreshEntailments;
     private resolveBaseIri;
     private getQueryContext;
+    private toOntologyGraphIri;
     private toRdfTerm;
     private isQueryValueTerm;
     private toMissingModelsWarnings;

package/out/owl/owl-sparql.js

@@ -4,11 +4,94 @@
 // the Worker constructor is mocked in browser-server.ts to prevent nested worker spawning while
 // allowing Comunica to initialize and execute queries successfully (without parallel execution).
 import { QueryEngine } from '@comunica/query-sparql';
-import { Store } from 'n3';
+import { DataFactory, Store } from 'n3';
 import { deriveSelectQueryFromShacl } from './owl-shacl.js';
+export function detectSparqlKind(sparql) {
+    const cleaned = sparql
+        .replace(/#[^\r\n]*/g, ' ')
+        .trim()
+        .toUpperCase();
+    const match = cleaned.match(/\b(SELECT|ASK|CONSTRUCT|DESCRIBE)\b/);
+    const keyword = match?.[1];
+    if (keyword === 'SELECT') {
+        return 'select';
+    }
+    if (keyword === 'ASK') {
+        return 'ask';
+    }
+    if (keyword === 'CONSTRUCT') {
+        return 'construct';
+    }
+    if (keyword === 'DESCRIBE') {
+        return 'describe';
+    }
+    return 'unknown';
+}
+function extractWhereBodyAndTail(sparql) {
+    const whereMatch = /\bWHERE\b/i.exec(sparql);
+    if (!whereMatch || whereMatch.index < 0) {
+        return undefined;
+    }
+    let cursor = whereMatch.index + whereMatch[0].length;
+    while (cursor < sparql.length && /\s/.test(sparql[cursor])) {
+        cursor += 1;
+    }
+    if (sparql[cursor] !== '{') {
+        return undefined;
+    }
+    const bodyStart = cursor + 1;
+    let depth = 1;
+    cursor += 1;
+    while (cursor < sparql.length && depth > 0) {
+        const ch = sparql[cursor];
+        if (ch === '{') {
+            depth += 1;
+        }
+        else if (ch === '}') {
+            depth -= 1;
+        }
+        cursor += 1;
+    }
+    if (depth !== 0) {
+        return undefined;
+    }
+    const bodyEnd = cursor - 1;
+    const body = sparql.slice(bodyStart, bodyEnd).trim();
+    const tail = sparql.slice(cursor).trim();
+    return { body, tail };
+}
+function rewriteDescribeToConstruct(sparql) {
+    const normalized = sparql.trim().replace(/\s+/g, ' ');
+    const describeMatch = /^DESCRIBE\s+(.+?)\s+(WHERE\b.*)$/is.exec(normalized);
+    if (!describeMatch) {
+        return sparql;
+    }
+    const describeVarsRaw = describeMatch[1].trim();
+    const whereAndTail = describeMatch[2];
+    const parsedWhere = extractWhereBodyAndTail(whereAndTail);
+    if (!parsedWhere) {
+        return sparql;
+    }
+    const variables = describeVarsRaw === '*'
+        ? ['?s']
+        : describeVarsRaw
+            .split(/\s+/)
+            .filter((token) => token.startsWith('?'));
+    if (variables.length === 0) {
+        return sparql;
+    }
+    const constructTriples = variables
+        .map((variable, index) => `${variable} ?__p${index} ?__o${index} .`)
+        .join(' ');
+    const whereTriples = variables
+        .map((variable, index) => `OPTIONAL { ${variable} ?__p${index} ?__o${index} . }`)
+        .join(' ');
+    const tail = parsedWhere.tail ? ` ${parsedWhere.tail}` : '';
+    return `CONSTRUCT { ${constructTriples} } WHERE { ${parsedWhere.body} ${whereTriples} }${tail}`;
+}
 export const deriveSelectQueryFromShape = deriveSelectQueryFromShacl;
 export class SparqlService {
-    constructor(reasoningStore, importGraph, aboxEntailmentCache, reasoningService) {
+    constructor(reasoningStore, importGraph, aboxEntailmentCache, reasoningService, resolveOntologyIriForModelUri) {
         this.reasoningStore = reasoningStore;
         this.importGraph = importGraph;
         this.aboxEntailmentCache = aboxEntailmentCache;
@@ -16,6 +99,10 @@ export class SparqlService {
         this.engine = new QueryEngine();
         this.filteredStoreCache = new Map();
         this.dirtyFilteredStores = new Set();
+        this.ontologyIriResolver = resolveOntologyIriForModelUri ?? ((modelUri) => modelUri);
+    }
+    setOntologyIriResolver(resolver) {
+        this.ontologyIriResolver = resolver;
     }
     /**
      * Executes a SPARQL query over the model's reasoned context.
@@ -61,7 +148,8 @@ export class SparqlService {
             const warnings = this.composeWarnings(modelUri, queryContext.missingModels);
             const filteredStore = this.getOrCreateFilteredStore(modelUri, queryContext);
             const baseIRI = this.resolveBaseIri(modelUri);
-            const quadsStream = await this.engine.queryQuads(sparql, {
+            const rewritten = detectSparqlKind(sparql) === 'describe' ? rewriteDescribeToConstruct(sparql) : sparql;
+            const quadsStream = await this.engine.queryQuads(rewritten, {
                 sources: [filteredStore],
                 unionDefaultGraph: true,
                 baseIRI,
@@ -113,7 +201,18 @@ export class SparqlService {
         }
     }
     getAvailableGraphs(modelUri) {
-        return this.getQueryContext(modelUri).graphs;
+        const seen = new Set();
+        const graphs = [];
+        for (const mapping of this.getQueryContext(modelUri).mappings) {
+            for (const graph of [mapping.targetOwnGraph, mapping.targetEntailmentsGraph]) {
+                if (seen.has(graph.value)) {
+                    continue;
+                }
+                seen.add(graph.value);
+                graphs.push(graph);
+            }
+        }
+        return graphs;
     }
     invalidateFilteredStore(modelUri) {
         this.filteredStoreCache.delete(modelUri);
@@ -181,7 +280,7 @@ export class SparqlService {
     getQueryContext(modelUri) {
         const allUris = [modelUri, ...this.importGraph.dependenciesOf(modelUri)];
         const seen = new Set();
-        const graphs = [];
+        const mappings = [];
         const missingModels = [];
         for (const uri of allUris) {
             let own;
@@ -193,15 +292,29 @@ export class SparqlService {
                 missingModels.push(uri);
                 continue;
             }
-            for (const graph of [own, entailments]) {
-                if (seen.has(graph.value)) {
-                    continue;
-                }
-                seen.add(graph.value);
-                graphs.push(graph);
+            if (seen.has(uri)) {
+                continue;
             }
+            seen.add(uri);
+            const resolved = this.ontologyIriResolver(uri);
+            if (!resolved || resolved === uri) {
+                throw new Error(`Missing ontology IRI mapping for model '${uri}'.`);
+            }
+            const ontologyIri = this.toOntologyGraphIri(resolved);
+            mappings.push({
+                ownGraph: own,
+                entailmentsGraph: entailments,
+                targetOwnGraph: DataFactory.namedNode(ontologyIri),
+                targetEntailmentsGraph: DataFactory.namedNode(`${ontologyIri}__entailments`),
+            });
+        }
+        return { mappings, missingModels };
+    }
+    toOntologyGraphIri(iri) {
+        if (iri.endsWith('#')) {
+            return iri.slice(0, -1);
         }
-        return { graphs, missingModels };
+        return iri;
     }
     toRdfTerm(term) {
         if (term.termType === 'NamedNode') {
@@ -229,12 +342,18 @@ export class SparqlService {
             .flatMap((uri) => this.aboxEntailmentCache.getValidationWarnings(uri));
         return [...new Set([...this.toMissingModelsWarnings(missingModels), ...closureWarnings])];
     }
-    createFilteredStore(graphs) {
+    createFilteredStore(mappings) {
         const filteredStore = new Store();
         const mainStore = this.reasoningStore.getStore();
         const seenTriples = new Set();
-        for (const graph of graphs) {
-            const uniqueQuads = mainStore.getQuads(null, null, null, graph).filter((quad) => {
+        for (const mapping of mappings) {
+            const quads = [
+                ...mainStore.getQuads(null, null, null, mapping.ownGraph)
+                    .map((quad) => DataFactory.quad(quad.subject, quad.predicate, quad.object, mapping.targetOwnGraph)),
+                ...mainStore.getQuads(null, null, null, mapping.entailmentsGraph)
+                    .map((quad) => DataFactory.quad(quad.subject, quad.predicate, quad.object, mapping.targetEntailmentsGraph)),
+            ];
+            const uniqueQuads = quads.filter((quad) => {
                 const key = `${quad.subject.id}|${quad.predicate.id}|${quad.object.id}`;
                 if (seenTriples.has(key)) {
                     return false;
@@ -251,7 +370,7 @@ export class SparqlService {
         if (cached && !this.dirtyFilteredStores.has(modelUri)) {
             return cached;
         }
-        const store = this.createFilteredStore(queryContext.graphs);
+        const store = this.createFilteredStore(queryContext.mappings);
         this.filteredStoreCache.set(modelUri, store);
         this.dirtyFilteredStores.delete(modelUri);
         return store;

package/out/owl/owl-sparql.js.map

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