@oml/mcp 0.15.0

package/README.md

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+# @oml/mcp
+
+MCP (Model Context Protocol) bridge that exposes the OML server REST interface to AI applications.
+
+## Usage
+
+```sh
+npx @oml/mcp [--workspace <path>] [--url <url>]
+```
+
+### Options
+
+| Flag | Short | Description |
+|------|-------|-------------|
+| `--workspace` | `-w` | Path to the OML workspace directory. Used to locate the server lock file under `~/.oml`. Defaults to the current working directory. |
+| `--url` | `-u` | Explicit base URL of the OML server, including protocol and port (e.g. `http://127.0.0.1:8080`). Takes priority over `--workspace` when both are provided. |
+
+When neither flag is given, the current working directory is treated as the workspace.
+
+## URL Resolution
+
+- If `--url` is provided, it is used directly.
+- Otherwise, the workspace path (from `--workspace` or `cwd`) is hashed (SHA-256 of its canonical path) to locate the server lock file at `~/.oml/workspaces/<hash>/server.lock`, and the port is read from that file.
+
+## Exposed Tools
+
+| Tool | Backend API | Description |
+|------|-------------|-------------|
+| `oml_workspace` | `GET /v0/workspace` | Return workspace root path |
+| `oml_models` | `GET /v0/models` | List model URIs (paginated) |
+| `oml_ontologies` | `GET /v0/models` + SPARQL | Map ontology IRI to `oml:type` (paginated) |
+| `oml_members` | SPARQL | List ontology members in context (paginated) |
+| `oml_shapes` | SPARQL | Find SHACL node shapes for a type (`sh:targetClass` or `sh:class`) |
+| `oml_assertions` | `POST /v0/assertions` | Return RDF assertions serialization |
+| `oml_paths` | SPARQL `SELECT` | Return path triples from source to target |
+| `oml_sparql` | SPARQL `SELECT` / `ASK` / `CONSTRUCT` / `DESCRIBE` | Return rows, booleans, or graph triples based on query kind |
+| `oml_imports` | SPARQL `SELECT` | Return `owl:imports` triples (paginated) |
+| `oml_search` | `POST /v0/fuzzysearch` | Fuzzy member search (paginated) |
+| `oml_update` | `POST /v0/update` | Apply operations and return diagnostics |
+| `oml_preview` | `POST /v0/update` with `preview=true` | Return workspace edit without persistence |
+| `oml_lint` | `POST /v0/lint` | Lint diagnostics (optional context filter client-side) |
+| `oml_validate` | `POST /v0/validate` | SHACL diagnostics (optional context filter client-side) |
+
+### `oml_update` / `oml_preview` operation types
+
+Update operations use the same wrapper schema as the REST API: each item has exactly one top-level property named after the operation.
+
+- `{ createInstance: { descriptionIri, instanceName } }`
+- `{ createRelationInstance: { descriptionIri, instanceName } }`
+- `{ createInstanceRef: { descriptionIri, instanceIri, typeIri? } }`
+- `{ createRelationInstanceRef: { descriptionIri, instanceIri, typeIri? } }`
+- `{ addAssertion: { descriptionIri, subjectIri, predicateIri, object } }`
+- `{ updateAssertion: { descriptionIri, subjectIri, predicateIri, object } }`
+- `{ removeAssertion: { descriptionIri, subjectIri, predicateIri, object? } }`
+- `{ addAnnotation: { ontologyIri, subjectIri, predicateIri, object } }`
+- `{ updateAnnotation: { ontologyIri, subjectIri, predicateIri, object } }`
+- `{ removeAnnotation: { ontologyIri, subjectIri, predicateIri, object? } }`
+- `{ deleteMemberCascade: { ontologyIri, memberIri } }`
+- `{ deleteMemberRef: { ontologyIri, memberIri, typeIri? } }`
+- `{ deleteOntology: { ontologyIri } }` (deletes ontology file only; caller must ensure safety)
+- `{ addImport: { importingIri, importedIri } }`
+- `{ removeImport: { importingIri, importedIri } }`
+- `{ createOntology: { ontologyKind, ontologyNamespace, ontologyPrefix } }`
+
+For backward compatibility, MCP still accepts the flat form like `{ kind: 'createInstance', ... }` and normalizes it before calling REST.
+
+Notes:
+
+- `referencingUri` is a request-level anchor for update placement. For `createOntology`, pass an existing nearby `.oml` file URI under the workspace `oml/` tree. Do not pass the destination URI you want created.
+- `createOntology` derives the new file path from `referencingUri` plus `ontologyNamespace`; it does not accept an explicit output path.
+- Prefer `addImport` after `createOntology` instead of hand-writing import text. `addImport` infers the correct `extends` / `includes` / `uses` kind and reuses the imported ontology prefix when possible.
+- When creating a new ontology and importing it in the same request, send both operations in one `oml_update` transaction and keep `referencingUri` at the top level of the request.

package/bin/mcp.js

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+#!/usr/bin/env node
+
+// Copyright (c) 2026 Modelware. All rights reserved.
+
+import { runMcpServer } from '../out/main.js';
+void runMcpServer();

package/out/main.d.ts

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+export declare function runMcpServer(argv?: string[]): Promise<void>;

package/out/main.js

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+// Copyright (c) 2026 Modelware. All rights reserved.
+import * as fs from 'node:fs/promises';
+import * as path from 'node:path';
+import * as os from 'node:os';
+import { createHash } from 'node:crypto';
+import { realpathSync } from 'node:fs';
+import { fileURLToPath } from 'node:url';
+import { Server } from '@modelcontextprotocol/sdk/server/index.js';
+import { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js';
+import { CallToolRequestSchema, ListToolsRequestSchema } from '@modelcontextprotocol/sdk/types.js';
+function stripSparqlComments(input) {
+    let out = '';
+    let inAngle = false;
+    let inSingle = false;
+    let inDouble = false;
+    let escaped = false;
+    for (let i = 0; i < input.length; i += 1) {
+        const ch = input[i];
+        if (escaped) {
+            out += ch;
+            escaped = false;
+            continue;
+        }
+        if (ch === '\\') {
+            out += ch;
+            escaped = inSingle || inDouble;
+            continue;
+        }
+        if (!inSingle && !inDouble && ch === '<') {
+            inAngle = true;
+            out += ch;
+            continue;
+        }
+        if (!inSingle && !inDouble && ch === '>') {
+            inAngle = false;
+            out += ch;
+            continue;
+        }
+        if (!inAngle && !inDouble && ch === '\'') {
+            inSingle = !inSingle;
+            out += ch;
+            continue;
+        }
+        if (!inAngle && !inSingle && ch === '"') {
+            inDouble = !inDouble;
+            out += ch;
+            continue;
+        }
+        if (!inAngle && !inSingle && !inDouble && ch === '#') {
+            while (i < input.length && input[i] !== '\n' && input[i] !== '\r') {
+                i += 1;
+            }
+            if (i < input.length) {
+                out += input[i];
+            }
+            continue;
+        }
+        out += ch;
+    }
+    return out;
+}
+function detectSparqlKind(sparql) {
+    const cleaned = stripSparqlComments(sparql).trim().toUpperCase();
+    const match = cleaned.match(/\b(SELECT|ASK|CONSTRUCT|DESCRIBE)\b/);
+    if (match?.[1] === 'SELECT')
+        return 'select';
+    if (match?.[1] === 'ASK')
+        return 'ask';
+    if (match?.[1] === 'CONSTRUCT')
+        return 'construct';
+    if (match?.[1] === 'DESCRIBE')
+        return 'describe';
+    return 'unknown';
+}
+function parseArgs(argv) {
+    let workspace;
+    let url;
+    for (let i = 0; i < argv.length; i++) {
+        const arg = argv[i];
+        if ((arg === '--workspace' || arg === '-w') && i + 1 < argv.length)
+            workspace = argv[++i];
+        else if (arg.startsWith('--workspace='))
+            workspace = arg.slice('--workspace='.length);
+        else if ((arg === '--url' || arg === '-u') && i + 1 < argv.length)
+            url = argv[++i];
+        else if (arg.startsWith('--url='))
+            url = arg.slice('--url='.length);
+    }
+    return { workspace, url };
+}
+function canonicalPath(workspaceRoot) {
+    const resolved = path.resolve(workspaceRoot);
+    try {
+        return realpathSync.native(resolved);
+    }
+    catch {
+        return resolved;
+    }
+}
+function lockFileForWorkspace(workspaceRoot) {
+    const hash = createHash('sha256').update(canonicalPath(workspaceRoot)).digest('hex');
+    return path.join(os.homedir(), '.oml', 'workspaces', hash, 'server.lock');
+}
+async function resolveBaseUrl(args) {
+    if (args.url && args.url.trim())
+        return args.url.trim().replace(/\/+$/, '');
+    const workspaceRoot = args.workspace?.trim() ? args.workspace.trim() : process.cwd();
+    const lockFile = lockFileForWorkspace(workspaceRoot);
+    let raw = '';
+    try {
+        raw = await fs.readFile(lockFile, 'utf-8');
+    }
+    catch {
+        throw new Error(`No OML server lock file found at '${lockFile}'. Ensure OML server is running for workspace '${workspaceRoot}'.`);
+    }
+    let lock;
+    try {
+        lock = JSON.parse(raw);
+    }
+    catch {
+        throw new Error(`Malformed OML server lock file at '${lockFile}'.`);
+    }
+    if (typeof lock.port !== 'number' || !Number.isFinite(lock.port)) {
+        throw new Error(`OML server lock file at '${lockFile}' does not contain a valid port number.`);
+    }
+    return `http://127.0.0.1:${lock.port}`;
+}
+function textResult(text, isError = false) {
+    return { content: [{ type: 'text', text }], isError };
+}
+function jsonResult(payload, isError = false) {
+    return textResult(JSON.stringify(payload), isError);
+}
+async function fetchJson(baseUrl, restPath, init) {
+    const url = `${baseUrl}${restPath}`;
+    let response;
+    try {
+        response = await fetch(url, init);
+    }
+    catch (error) {
+        const err = error instanceof Error ? error.message : String(error);
+        throw new Error(`OML server unreachable (${err}) URL: ${url}`);
+    }
+    const text = await response.text();
+    let parsed = text;
+    try {
+        parsed = text ? JSON.parse(text) : {};
+    }
+    catch {
+        // Keep as text when not JSON.
+    }
+    if (!response.ok) {
+        if (typeof parsed === 'object' && parsed && typeof parsed.error === 'string') {
+            throw new Error(String(parsed.error));
+        }
+        throw new Error(`HTTP ${response.status} from ${url}: ${text}`);
+    }
+    return parsed;
+}
+async function restGetJson(baseUrl, restPath, headers) {
+    return await fetchJson(baseUrl, restPath, { method: 'GET', headers });
+}
+async function restPostJson(baseUrl, restPath, body) {
+    return await fetchJson(baseUrl, restPath, {
+        method: 'POST',
+        headers: { 'content-type': 'application/json' },
+        body: JSON.stringify(body),
+    });
+}
+function unwrapRestEnvelope(response) {
+    // REST server wraps POST responses in {ok, method, result, requestId}
+    return response?.result ?? response;
+}
+async function restGetText(baseUrl, restPath, accept) {
+    const url = `${baseUrl}${restPath}`;
+    let response;
+    try {
+        response = await fetch(url, { method: 'GET', headers: { accept } });
+    }
+    catch (error) {
+        const err = error instanceof Error ? error.message : String(error);
+        throw new Error(`OML server unreachable (${err}) URL: ${url}`);
+    }
+    const text = await response.text();
+    if (!response.ok) {
+        throw new Error(`HTTP ${response.status} from ${url}: ${text}`);
+    }
+    return text;
+}
+async function fetchWorkspace(baseUrl) {
+    const json = await restGetJson(baseUrl, '/v0/workspace');
+    const payload = unwrapRestEnvelope(json);
+    if (typeof payload.workspaceUri !== 'string') {
+        throw new Error('Invalid /v0/workspace response.');
+    }
+    const workspaceUri = payload.workspaceUri.replace(/\/+$/, '');
+    const workspaceRoot = workspaceUri.startsWith('file://')
+        ? fileURLToPath(workspaceUri)
+        : workspaceUri;
+    const roots = Array.isArray(payload.roots) ? payload.roots.filter((r) => typeof r === 'string') : [];
+    return { workspaceUri, workspaceRoot, roots };
+}
+const OML_TYPE_SHORT = {
+    'http://opencaesar.io/oml#Vocabulary': 'vocabulary',
+    'http://opencaesar.io/oml#VocabularyBundle': 'vocabularyBundle',
+    'http://opencaesar.io/oml#Description': 'description',
+    'http://opencaesar.io/oml#DescriptionBundle': 'descriptionBundle',
+};
+async function fetchOntologies(baseUrl, workspaceUri, includeImports = false) {
+    const json = await restGetJson(baseUrl, '/v0/ontologies');
+    const ontologies = Array.isArray(json.ontologies) ? json.ontologies : [];
+    const wsPrefix = workspaceUri.replace(/\/+$/, '') + '/';
+    return ontologies
+        .map((entry) => {
+        const ontology = typeof entry?.ontology === 'string' ? String(entry.ontology) : '';
+        const rawType = typeof entry?.oml_type === 'string' ? String(entry.oml_type) : '';
+        const type = OML_TYPE_SHORT[rawType] ?? rawType;
+        const modelUri = typeof entry?.modelUri === 'string' ? String(entry.modelUri) : '';
+        const path = modelUri.startsWith(wsPrefix) ? modelUri.slice(wsPrefix.length) : modelUri;
+        const imports = Array.isArray(entry?.imports)
+            ? entry.imports.filter((i) => typeof i === 'string')
+            : [];
+        const result = { ontology, type, path };
+        if (includeImports)
+            result.imports = imports;
+        return result;
+    })
+        .filter((entry) => entry.ontology.length > 0 && entry.type.length > 0)
+        .sort((a, b) => a.ontology.localeCompare(b.ontology));
+}
+function parsePageRequest(args, defaultPageSize = 50, maxPageSize = 200) {
+    const sizeRaw = args.pageSize;
+    const pageSize = Math.max(1, Math.min(maxPageSize, typeof sizeRaw === 'number' ? Math.floor(sizeRaw) : defaultPageSize));
+    const pageToken = typeof args.pageToken === 'string' && args.pageToken.trim().length > 0 ? args.pageToken.trim() : undefined;
+    return { pageSize, pageToken };
+}
+function decodePageToken(token) {
+    if (!token)
+        return 0;
+    let decoded = '';
+    try {
+        decoded = Buffer.from(token, 'base64url').toString('utf-8');
+    }
+    catch {
+        throw new Error('Invalid pageToken encoding.');
+    }
+    let parsed;
+    try {
+        parsed = JSON.parse(decoded);
+    }
+    catch {
+        throw new Error('Invalid pageToken payload.');
+    }
+    const offset = parsed?.offset;
+    if (typeof offset !== 'number' || !Number.isInteger(offset) || offset < 0) {
+        throw new Error('Invalid pageToken offset.');
+    }
+    return offset;
+}
+function encodePageToken(offset) {
+    return Buffer.from(JSON.stringify({ offset }), 'utf-8').toString('base64url');
+}
+function paginate(items, page) {
+    const start = decodePageToken(page.pageToken);
+    if (start >= items.length) {
+        return { items: [], truncated: false };
+    }
+    const end = Math.min(items.length, start + page.pageSize);
+    return {
+        items: items.slice(start, end),
+        nextPageToken: end < items.length ? encodePageToken(end) : undefined,
+        truncated: end < items.length,
+    };
+}
+function ontologyIriToModelId(ontologyIri) {
+    const iri = new URL(ontologyIri);
+    const rawPath = iri.pathname.replace(/\/+$/, '');
+    const segments = rawPath.split('/').filter(Boolean);
+    const stem = segments.at(-1) || 'index';
+    const dirSegs = iri.host ? [iri.host, ...segments.slice(0, -1)] : segments.slice(0, -1);
+    return [...dirSegs, stem].join('/');
+}
+function resolveContext(args) {
+    const contextArg = typeof args.context === 'string' ? args.context.trim() : '';
+    const ontologyArg = typeof args.ontology === 'string' ? args.ontology.trim() : '';
+    const ontologyIriArg = typeof args.ontologyIri === 'string' ? args.ontologyIri.trim() : '';
+    const iri = ontologyIriArg || ontologyArg || contextArg;
+    if (!iri)
+        throw new Error('An ontologyIri parameter is required.');
+    return iri;
+}
+async function runSparqlSelect(baseUrl, ontologyIri, sparql) {
+    const modelId = encodeURIComponent(ontologyIriToModelId(ontologyIri));
+    const query = encodeURIComponent(sparql);
+    return await restGetJson(baseUrl, `/v0/sparql/${modelId}?query=${query}`, { accept: 'application/sparql-results+json' });
+}
+async function runSparqlGraph(baseUrl, ontologyIri, sparql) {
+    const modelId = encodeURIComponent(ontologyIriToModelId(ontologyIri));
+    const query = encodeURIComponent(sparql);
+    return restGetText(baseUrl, `/v0/sparql/${modelId}?query=${query}`, 'text/turtle');
+}
+// Wrapped operation schema: each operation is a single-key object {operationKind: {props}}.
+const UPDATE_OPERATION_SCHEMA = {
+    type: 'object',
+    minProperties: 1,
+    maxProperties: 1,
+    additionalProperties: {
+        type: 'object',
+    },
+};
+const UPDATE_TOOL_DESCRIPTION = `Apply (or preview) OML update operations. Pass preview:true to return the edit without writing to disk.
+
+Each operation is {kind: {props}} where kind is one of the following (* = required):
+createInstance/createRelationInstance: {descriptionIri*, instanceName*}
+createInstanceRef/createRelationInstanceRef: {descriptionIri*, instanceIri*, typeIri?}
+addAssertion/updateAssertion: {descriptionIri*, subjectIri*, predicateIri*, object*}
+removeAssertion: {descriptionIri*, subjectIri*, predicateIri*, object?}
+addImport/removeImport: {importingIri*, importedIri*}
+addAnnotation/updateAnnotation: {ontologyIri*, subjectIri*, predicateIri*, object*}
+removeAnnotation: {ontologyIri*, subjectIri*, predicateIri*, object?}
+deleteMemberCascade/deleteMemberRef: {ontologyIri*, memberIri*, typeIri?}
+deleteOntology: {ontologyIri*}
+createOntology: {ontologyKind*(vocabulary|description|vocabulary bundle|description bundle), ontologyNamespace*, ontologyPrefix*, targetFolder?(workspace-relative path to the 'oml' root folder)}
+
+object: IRI string, number, boolean, or {value, datatypeIri?, langTag?, typeIri?}
+
+Example: {"createInstance": {"descriptionIri": "http://example.org/model", "instanceName": "MyInstance"}}`;
+const PAGINATION_PROPS = {
+    pageSize: { type: 'integer', description: 'Items per page (default 50)' },
+    pageToken: { type: 'string', description: 'Token from previous response' },
+};
+const TOOLS = [
+    {
+        name: 'oml_workspace',
+        description: 'Get workspace info. Returns {workspaceUri, roots} where roots are the ontology IRIs at the top of the import graph (not imported by anything else). Use a root as the context for broad oml_sparql and oml_paths queries.',
+        inputSchema: { type: 'object', properties: {} }
+    },
+    {
+        name: 'oml_ontologies',
+        description: 'List workspace ontologies with type. Add includeImports:true to include direct imports.',
+        inputSchema: {
+            type: 'object',
+            properties: {
+                includeImports: { type: 'boolean', description: 'Include imports list (default false)' },
+                ...PAGINATION_PROPS,
+            }
+        },
+    },
+    {
+        name: 'oml_members',
+        description: 'List ontology members, optionally filtered by kind.',
+        inputSchema: {
+            type: 'object',
+            required: ['ontology'],
+            properties: {
+                ontology: { type: 'string', description: 'Ontology IRI.' },
+                kind: { type: 'string', enum: ['all', 'classes', 'properties', 'instances'], description: 'Member kind filter (default all). properties includes scalar properties, annotation properties, and relations.' },
+                ...PAGINATION_PROPS,
+            },
+        },
+    },
+    {
+        name: 'oml_about',
+        description: 'Get all axioms where one or more members appear as subject or object. Returns Turtle. Use for single-member inspection or a small known set. Do NOT call in a loop over discovered members — write a SPARQL CONSTRUCT instead.',
+        inputSchema: {
+            type: 'object',
+            required: ['context', 'members'],
+            properties: {
+                context: { type: 'string', description: 'Ontology IRI (query context).' },
+                members: {
+                    oneOf: [
+                        { type: 'string', description: 'Single member IRI.' },
+                        { type: 'array', items: { type: 'string' }, description: 'Multiple member IRIs.' },
+                    ],
+                    description: 'Member IRI(s) to describe.',
+                },
+            },
+        },
+    },
+    {
+        name: 'oml_shapes',
+        description: 'Find SHACL NodeShapes for a class IRI from markdown.',
+        inputSchema: {
+            type: 'object',
+            required: ['type'],
+            properties: {
+                type: { type: 'string', description: 'Class IRI.' },
+                pageSize: { type: 'integer', description: 'Items per page (default 20)' },
+                pageToken: { type: 'string', description: 'Token from previous response' },
+            },
+        },
+    },
+    {
+        name: 'oml_assertions',
+        description: 'Export RDF assertions for an ontology.',
+        inputSchema: {
+            type: 'object',
+            properties: {
+                ontology: { type: 'string', description: 'Ontology IRI filter. Omit for all.' },
+                format: { type: 'string', description: 'ttl | turtle | jsonld | ntriples | nquads' },
+                pretty: { type: 'boolean', description: 'Pretty-print (default false)' },
+            },
+        },
+    },
+    {
+        name: 'oml_paths',
+        description: 'Find RDF property paths between two IRIs.',
+        inputSchema: {
+            type: 'object',
+            required: ['context', 'source', 'target'],
+            properties: {
+                context: { type: 'string', description: 'Ontology IRI.' },
+                source: { type: 'string', description: 'Source IRI.' },
+                target: { type: 'string', description: 'Target IRI.' },
+                maxDepth: { type: 'integer', description: 'Max hops (default 3).' },
+                pageSize: { type: 'integer', description: 'Items per page (default 20)' },
+                pageToken: { type: 'string', description: 'Token from previous response' },
+            },
+        },
+    },
+    {
+        name: 'oml_sparql',
+        description: 'Run a SPARQL SELECT, ASK, CONSTRUCT, or DESCRIBE query.',
+        inputSchema: {
+            type: 'object',
+            required: ['context', 'sparql'],
+            properties: {
+                context: { type: 'string', description: 'Ontology IRI.' },
+                sparql: { type: 'string', description: 'SPARQL query.' },
+                pageSize: { type: 'integer', description: 'Rows per page (default 20)' },
+                pageToken: { type: 'string', description: 'Token from previous response' },
+            }
+        },
+    },
+    {
+        name: 'oml_search',
+        description: 'Fuzzy search ontology members by text.',
+        inputSchema: {
+            type: 'object',
+            required: ['text'],
+            properties: {
+                text: { type: 'string', description: 'Search text.' },
+                pageSize: { type: 'integer', description: 'Results per page (default 12, max 50)' },
+                pageToken: { type: 'string', description: 'Token from previous response' },
+            },
+        },
+    },
+    {
+        name: 'oml_update',
+        description: UPDATE_TOOL_DESCRIPTION,
+        inputSchema: {
+            type: 'object',
+            required: ['operations'],
+            properties: {
+                operations: {
+                    type: 'array',
+                    items: UPDATE_OPERATION_SCHEMA,
+                    description: 'Array of update operations.',
+                },
+                preview: { type: 'boolean', description: 'Return edit without writing to disk.' },
+            }
+        },
+    },
+    {
+        name: 'oml_validate',
+        description: 'Run OML lint then SHACL validation. Returns early with lint problems if lint fails.',
+        inputSchema: {
+            type: 'object',
+            properties: {
+                ontologies: { type: 'array', items: { type: 'string' }, description: 'Optional IRI filter.' },
+                pageSize: { type: 'integer', description: 'Problems per page (default 20)' },
+                pageToken: { type: 'string', description: 'Token from previous response' },
+            },
+        },
+    },
+];
+function toOntologyIriArray(value) {
+    if (!Array.isArray(value))
+        return [];
+    return value.filter((item) => typeof item === 'string' && (String(item).startsWith('http://') || String(item).startsWith('https://'))).map((item) => String(item).trim());
+}
+function escapeIri(iri) {
+    return `<${iri.replace(/>/g, '%3E')}>`;
+}
+function iriNamespace(iri) {
+    const h = iri.lastIndexOf('#');
+    if (h >= 0)
+        return iri.slice(0, h + 1);
+    const s = iri.lastIndexOf('/');
+    return s >= 0 ? iri.slice(0, s + 1) : iri;
+}
+function buildPrefixMap(iris) {
+    const nsToPrefix = new Map();
+    const used = new Set();
+    for (const iri of iris) {
+        if (!iri.startsWith('http://') && !iri.startsWith('https://'))
+            continue;
+        const ns = iriNamespace(iri);
+        if (nsToPrefix.has(ns))
+            continue;
+        const clean = ns.replace(/[#/]+$/, '');
+        const seg = clean.slice(clean.lastIndexOf('/') + 1).replace(/[^a-zA-Z0-9]/g, '_').replace(/^[^a-zA-Z_]/, 'n') || 'ns';
+        let p = seg, n = 2;
+        while (used.has(p))
+            p = seg + (n++);
+        nsToPrefix.set(ns, p);
+        used.add(p);
+    }
+    const prefixes = {};
+    for (const [ns, p] of [...nsToPrefix.entries()].sort((a, b) => a[1].localeCompare(b[1])))
+        prefixes[p] = ns;
+    const compress = (iri) => {
+        if (!iri.startsWith('http://') && !iri.startsWith('https://'))
+            return iri;
+        const ns = iriNamespace(iri);
+        const p = nsToPrefix.get(ns);
+        return p ? `${p}:${iri.slice(ns.length)}` : iri;
+    };
+    return { prefixes, compress };
+}
+function compressRecords(items, compress) {
+    return items.map(row => {
+        const out = {};
+        for (const [k, v] of Object.entries(row))
+            out[k] = typeof v === 'string' && (v.startsWith('http://') || v.startsWith('https://')) ? compress(v) : v;
+        return out;
+    });
+}
+async function dispatchTool(parsedArgs, name, args) {
+    const baseUrl = await resolveBaseUrl(parsedArgs);
+    if (name === 'oml_workspace') {
+        const { workspaceUri, roots } = await fetchWorkspace(baseUrl);
+        return jsonResult({ workspaceUri, roots });
+    }
+    if (name === 'oml_ontologies') {
+        const includeImports = args.includeImports === true;
+        const { workspaceUri } = await fetchWorkspace(baseUrl);
+        const ontologies = await fetchOntologies(baseUrl, workspaceUri, includeImports);
+        return jsonResult(paginate(ontologies, parsePageRequest(args)));
+    }
+    if (name === 'oml_members') {
+        const ontologyIri = resolveContext(args);
+        const kind = typeof args.kind === 'string' ? args.kind : 'all';
+        const KIND_TYPES = {
+            classes: ['oml:Concept', 'oml:Aspect', 'oml:RelationEntity', 'oml:Scalar'],
+            properties: ['oml:ScalarProperty', 'oml:AnnotationProperty', 'oml:ForwardRelation', 'oml:ReverseRelation', 'oml:UnreifiedRelation'],
+            instances: ['oml:ConceptInstance', 'oml:RelationInstance'],
+        };
+        const kindFilter = kind !== 'all' && KIND_TYPES[kind]
+            ? `FILTER(?oml_type IN (${KIND_TYPES[kind].join(', ')}))`
+            : '';
+        const sparql = `
+PREFIX oml: <http://opencaesar.io/oml#>
+SELECT ?member ?oml_type ?rdfs_type
+WHERE {
+    GRAPH ${escapeIri(ontologyIri)} {
+        ?member a ?rdfs_type .
+        ?member oml:type ?oml_type .
+        FILTER(?member != ${escapeIri(ontologyIri)})
+        ${kindFilter}
+    }
+}
+`;
+        const result = await runSparqlSelect(baseUrl, ontologyIri, sparql);
+        const bindings = Array.isArray(result?.results?.bindings) ? result.results.bindings : [];
+        const members = bindings
+            .map((binding) => ({
+            member: String(binding?.member?.value ?? ''),
+            oml_type: String(binding?.oml_type?.value ?? ''),
+            rdfs_type: binding?.rdfs_type?.value ? String(binding.rdfs_type.value) : undefined
+        }))
+            .filter((entry) => entry.member && entry.oml_type)
+            .sort((a, b) => a.member.localeCompare(b.member));
+        const page = paginate(members, parsePageRequest(args));
+        const allIris = page.items.flatMap((m) => [m.member, m.oml_type, m.rdfs_type].filter(Boolean));
+        const { prefixes, compress } = buildPrefixMap(allIris);
+        return jsonResult({ prefixes, items: compressRecords(page.items, compress), nextPageToken: page.nextPageToken, truncated: page.truncated });
+    }
+    if (name === 'oml_about') {
+        const ontologyIri = resolveContext(args);
+        const raw = args.members;
+        const memberIris = (Array.isArray(raw) ? raw : [raw])
+            .map((m) => String(m ?? '').trim())
+            .filter(Boolean);
+        if (memberIris.length === 0)
+            throw new Error('oml_about requires at least one member IRI.');
+        const values = memberIris.map((iri) => escapeIri(iri)).join(' ');
+        const sparql = `
+CONSTRUCT { ?s ?p ?o }
+WHERE {
+    { VALUES ?s { ${values} } ?s ?p ?o }
+    UNION
+    { VALUES ?o { ${values} } ?s ?p ?o }
+}
+`;
+        const turtle = await runSparqlGraph(baseUrl, ontologyIri, sparql);
+        return jsonResult({ turtle });
+    }
+    if (name === 'oml_shapes') {
+        const typeIri = String(args.type ?? '').trim();
+        if (!typeIri)
+            throw new Error('oml_shapes requires type IRI.');
+        const result = unwrapRestEnvelope(await restPostJson(baseUrl, '/v0/shapes', { type: typeIri }));
+        if (!result.success) {
+            return jsonResult(result, true);
+        }
+        const results = Array.isArray(result.results) ? result.results : [];
+        return jsonResult(paginate(results, parsePageRequest(args, 20)));
+    }
+    if (name === 'oml_assertions') {
+        const ontologyArg = typeof args.ontology === 'string' ? args.ontology.trim() : '';
+        const format = typeof args.format === 'string' ? args.format.toLowerCase() : 'ttl';
+        const body = { format, pretty: args.pretty !== false };
+        if (ontologyArg)
+            body.ontologyIri = ontologyArg;
+        const result = unwrapRestEnvelope(await restPostJson(baseUrl, '/v0/assertions', body));
+        return jsonResult(result);
+    }
+    if (name === 'oml_sparql') {
+        const ontologyIri = resolveContext(args);
+        const sparql = String(args.sparql ?? '').trim();
+        if (!sparql)
+            throw new Error('oml_sparql requires sparql.');
+        const kind = detectSparqlKind(sparql);
+        if (kind === 'select') {
+            const result = await runSparqlSelect(baseUrl, ontologyIri, sparql);
+            const bindings = Array.isArray(result?.results?.bindings) ? result.results.bindings : [];
+            const rows = bindings.map((binding) => {
+                const row = {};
+                for (const [key, valueObj] of Object.entries(binding)) {
+                    row[key] = valueObj?.value;
+                }
+                return row;
+            });
+            const page = paginate(rows, parsePageRequest(args, 20));
+            const allIris = page.items.flatMap((row) => Object.values(row).filter((v) => typeof v === 'string' && (v.startsWith('http://') || v.startsWith('https://'))));
+            const { prefixes, compress } = buildPrefixMap(allIris);
+            return jsonResult({ kind, prefixes, items: compressRecords(page.items, compress), nextPageToken: page.nextPageToken, truncated: page.truncated });
+        }
+        if (kind === 'ask') {
+            const ask = await runSparqlSelect(baseUrl, ontologyIri, sparql);
+            return jsonResult({ kind, result: Boolean(ask?.boolean) });
+        }
+        if (kind === 'construct' || kind === 'describe') {
+            const turtle = await runSparqlGraph(baseUrl, ontologyIri, sparql);
+            return jsonResult({ kind, turtle });
+        }
+        throw new Error(`oml_sparql requires a SELECT, ASK, CONSTRUCT, or DESCRIBE query, but detected '${kind}'.`);
+    }
+    if (name === 'oml_paths') {
+        const ontologyIri = resolveContext(args);
+        const source = String(args.source ?? '').trim();
+        const target = String(args.target ?? '').trim();
+        if (!source || !target)
+            throw new Error('oml_paths requires source and target IRIs.');
+        const maxDepth = Math.max(1, Math.min(8, typeof args.maxDepth === 'number' ? Math.floor(args.maxDepth) : 4));
+        const visited = new Set([source]);
+        const parent = new Map();
+        let frontier = [source];
+        let found = false;
+        for (let depth = 0; depth < maxDepth && frontier.length > 0 && !found; depth += 1) {
+            const values = frontier.map((iri) => escapeIri(iri)).join(' ');
+            const sparql = `SELECT ?s ?p ?o WHERE { VALUES ?s { ${values} } ?s ?p ?o . FILTER(isIRI(?o)) }`;
+            const result = await runSparqlSelect(baseUrl, ontologyIri, sparql);
+            const bindings = Array.isArray(result?.results?.bindings) ? result.results.bindings : [];
+            const next = [];
+            for (const binding of bindings) {
+                const s = String(binding?.s?.value ?? '');
+                const p = String(binding?.p?.value ?? '');
+                const o = String(binding?.o?.value ?? '');
+                if (!s || !p || !o)
+                    continue;
+                if (!visited.has(o)) {
+                    visited.add(o);
+                    parent.set(o, { from: s, predicate: p });
+                    next.push(o);
+                    if (o === target) {
+                        found = true;
+                        break;
+                    }
+                }
+            }
+            frontier = next;
+        }
+        if (!found)
+            return jsonResult({ prefixes: {}, items: [], truncated: false });
+        const triples = [];
+        let cursor = target;
+        while (cursor !== source) {
+            const step = parent.get(cursor);
+            if (!step)
+                break;
+            triples.push({ subject: step.from, predicate: step.predicate, object: cursor });
+            cursor = step.from;
+        }
+        triples.reverse();
+        const page = paginate(triples, parsePageRequest(args, 20));
+        const allIris = page.items.flatMap(t => [t.subject, t.predicate, t.object]);
+        const { prefixes, compress } = buildPrefixMap(allIris);
+        return jsonResult({ prefixes, items: page.items.map(t => ({ subject: compress(t.subject), predicate: compress(t.predicate), object: compress(t.object) })), nextPageToken: page.nextPageToken, truncated: page.truncated });
+    }
+    if (name === 'oml_search') {
+        const text = String(args.text ?? '').trim();
+        if (!text)
+            throw new Error('oml_search requires text.');
+        const fuzzy = unwrapRestEnvelope(await restPostJson(baseUrl, '/v0/fuzzysearch', { text, limit: 50 }));
+        if (fuzzy?.success === false) {
+            throw new Error(typeof fuzzy?.error === 'string' && fuzzy.error.trim().length > 0
+                ? fuzzy.error
+                : 'fuzzysearch failed');
+        }
+        const candidates = Array.isArray(fuzzy?.candidates) ? fuzzy.candidates : [];
+        const items = candidates
+            .map((candidate) => ({
+            member: String(candidate?.member ?? ''),
+            confidence: Number(candidate?.score ?? 0),
+            label: typeof candidate?.label === 'string' ? candidate.label : undefined,
+        }))
+            .filter((item) => item.member);
+        return jsonResult(paginate(items, parsePageRequest(args, 12, 50)));
+    }
+    if (name === 'oml_update') {
+        const preview = args.preview === true;
+        const body = { ...args };
+        if (preview)
+            body.preview = true;
+        const result = unwrapRestEnvelope(await restPostJson(baseUrl, '/v0/update', body));
+        if (!preview && result && typeof result === 'object' && 'edit' in result) {
+            delete result.edit;
+        }
+        return jsonResult(result, result?.success === false);
+    }
+    if (name === 'oml_validate') {
+        const ontologyIris = toOntologyIriArray(args.ontologies);
+        const body = ontologyIris.length > 0 ? { ontologies: ontologyIris } : {};
+        const result = unwrapRestEnvelope(await restPostJson(baseUrl, '/v0/validate', body));
+        const problems = Array.isArray(result?.problems) ? result.problems : [];
+        const page = paginate(problems, parsePageRequest(args, 20));
+        return jsonResult({
+            success: result.success,
+            filesChecked: result.filesChecked,
+            errors: result.errors,
+            warnings: result.warnings,
+            problems: page.items,
+            nextPageToken: page.nextPageToken,
+            truncated: page.truncated
+        }, result?.success === false);
+    }
+    throw new Error(`Unknown tool: ${name}`);
+}
+export async function runMcpServer(argv = process.argv.slice(2)) {
+    const parsedArgs = parseArgs(argv);
+    const pkgPath = path.resolve(fileURLToPath(import.meta.url), '../..', 'package.json');
+    const { name, version } = JSON.parse(await fs.readFile(pkgPath, 'utf-8'));
+    const server = new Server({ name, version }, { capabilities: { tools: {} } });
+    server.setRequestHandler(ListToolsRequestSchema, async () => ({ tools: TOOLS }));
+    server.setRequestHandler(CallToolRequestSchema, async (request) => {
+        try {
+            const { name, arguments: toolArgs } = request.params;
+            return await dispatchTool(parsedArgs, name, (toolArgs ?? {}));
+        }
+        catch (error) {
+            return textResult(error instanceof Error ? error.message : String(error), true);
+        }
+    });
+    const transport = new StdioServerTransport();
+    await server.connect(transport);
+}
+//# sourceMappingURL=main.js.map

package/out/main.js.map

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package/package.json

@@ -0,0 +1,34 @@
+{
+    "name": "@oml/mcp",
+    "description": "MCP bridge for the OML REST server",
+    "version": "0.15.0",
+    "type": "module",
+    "engines": {
+        "node": ">=20.10.0",
+        "npm": ">=10.2.3"
+    },
+    "files": [
+        "bin",
+        "out",
+        "README.md",
+        "package.json"
+    ],
+    "bin": {
+        "oml-mcp": "./bin/mcp.js"
+    },
+    "scripts": {
+        "clean": "shx rm -fr *.tsbuildinfo out",
+        "build": "echo 'No build step'",
+        "build:clean": "npm run clean && npm run build"
+    },
+    "dependencies": {
+        "@modelcontextprotocol/sdk": "^1.29.0"
+    },
+    "devDependencies": {
+        "shx": "~0.4.0"
+    },
+    "volta": {
+        "node": "20.19.2",
+        "npm": "10.8.2"
+    }
+}