@oml/cli 0.14.15 → 0.14.17

package/out/cli.js

@@ -175,7 +175,8 @@ export async function runCli(argv = process.argv) {
         .option('-f, --format <ext>', 'RDF format extension: ttl, trig, nt, nq, or n3', 'ttl')
         .option('--clean', 'remove output folder before reason (only when --owl is provided)')
         .option('--pretty', 'pretty-print Turtle/TriG output with blank lines between top-level blocks (only when --owl is provided)')
-        .option('-e, --explanation [value]', 'enable or disable inconsistency explanations', parseBooleanOption, true)
+        .option('-u, --unique-names-assumption [value]', 'enable or disable the unique names assumption', parseBooleanOption, true)
+        .option('-e, --explanation [value]', 'enable or disable inconsistency explanations', parseBooleanOption, false)
         .description('run workspace consistency checks (or persist entailments with --owl)')
         .action(async (opts) => {
         const done = trackCommand('oml-reason');

package/out/cli.js.map

@@ -1 +1 @@
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package/out/commands/export.js

@@ -3,6 +3,7 @@ import chalk from 'chalk';
 import * as path from 'node:path';
 import { failCli } from '../cli-error.js';
 import { formatDuration } from '../util.js';
+import { printLintDiagnostics } from './lint.js';
 import { restPost } from './server/rest.js';
 function normalizeRdfFormat(value) {
     const normalized = String(value ?? 'ttl').trim().toLowerCase();
@@ -21,6 +22,13 @@ export const exportAction = async (opts) => {
         pretty: opts.pretty === true,
     }, opts.authToken);
     if (!result.success) {
+        printLintDiagnostics({
+            success: false,
+            filesChecked: Number(result.filesChecked ?? 0),
+            errors: Number(result.errors ?? 0),
+            warnings: Number(result.warnings ?? 0),
+            problems: result.problems,
+        });
         failCli(chalk.red(result.error?.trim() || 'export failed.'));
     }
     if (result.filesWritten <= 0) {

package/out/commands/export.js.map

@@ -1 +1 @@
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package/out/commands/reason.js

@@ -5,10 +5,11 @@ import * as fs from 'node:fs/promises';
 import * as os from 'node:os';
 import * as path from 'node:path';
 import { fileURLToPath } from 'node:url';
-import { Parser, Writer } from 'n3';
 import { failCli } from '../cli-error.js';
 import { formatDuration } from '../util.js';
+import { printLintDiagnostics } from './lint.js';
 import { restPost } from './server/rest.js';
+const OWL_IMPORTS_IRI = '<http://www.w3.org/2002/07/owl#imports>';
 function normalizeRdfFormat(value) {
     const normalized = String(value ?? 'ttl').trim().toLowerCase();
     if (normalized === 'trig' || normalized === 'nt' || normalized === 'nq' || normalized === 'n3') {
@@ -16,42 +17,6 @@ function normalizeRdfFormat(value) {
     }
     return 'ttl';
 }
-function rdfWriterFormat(format) {
-    if (format === 'ttl') {
-        return 'text/turtle';
-    }
-    if (format === 'trig') {
-        return 'application/trig';
-    }
-    if (format === 'nt') {
-        return 'N-Triples';
-    }
-    if (format === 'nq') {
-        return 'N-Quads';
-    }
-    return 'application/n3';
-}
-function rdfParserFormat(format) {
-    return rdfWriterFormat(format);
-}
-async function parseRdf(serialized, format) {
-    const parser = new Parser({ format: rdfParserFormat(format) });
-    return parser.parse(serialized);
-}
-async function serializeRdf(quads, format, pretty) {
-    const writer = new Writer({ format: rdfWriterFormat(format) });
-    writer.addQuads(quads);
-    const serialized = await new Promise((resolve, reject) => {
-        writer.end((error, result) => {
-            if (error) {
-                reject(error);
-                return;
-            }
-            resolve(result);
-        });
-    });
-    return pretty ? prettyPrintRdf(serialized, format) : serialized;
-}
 function prettyPrintRdf(serialized, format) {
     if (format !== 'ttl' && format !== 'trig') {
         return serialized;
@@ -61,7 +26,7 @@ function prettyPrintRdf(serialized, format) {
     for (let i = 0; i < lines.length; i += 1) {
         const line = lines[i];
         out.push(line);
-        if (line.trim() === '.') {
+        if (line.trim().endsWith('.')) {
             const next = lines[i + 1];
             if (next !== undefined && next.trim().length > 0) {
                 out.push('');
@@ -70,62 +35,102 @@ function prettyPrintRdf(serialized, format) {
     }
     return out.join('\n');
 }
-async function convertSerializedRdf(serialized, sourceFormat, targetFormat, pretty) {
-    if (sourceFormat === targetFormat && !pretty) {
-        return serialized;
+function extractImports(serialized) {
+    const imports = new Set();
+    const statementPattern = /(?:<http:\/\/www\.w3\.org\/2002\/07\/owl#imports>|owl:imports)\s+([^;.]*)[;.]/gms;
+    let statementMatch;
+    while ((statementMatch = statementPattern.exec(serialized)) !== null) {
+        const tail = statementMatch[1] ?? '';
+        const iriPattern = /<([^>]+)>/g;
+        let iriMatch;
+        while ((iriMatch = iriPattern.exec(tail)) !== null) {
+            const iri = iriMatch[1]?.trim();
+            if (iri) {
+                imports.add(iri);
+            }
+        }
     }
-    if (sourceFormat === targetFormat) {
-        return prettyPrintRdf(serialized, targetFormat);
+    // Handle compact single-line N-Triples cases defensively.
+    if (imports.size === 0 && serialized.includes(OWL_IMPORTS_IRI)) {
+        const linePattern = /<http:\/\/www\.w3\.org\/2002\/07\/owl#imports>\s+<([^>]+)>/g;
+        let lineMatch;
+        while ((lineMatch = linePattern.exec(serialized)) !== null) {
+            const iri = lineMatch[1]?.trim();
+            if (iri) {
+                imports.add(iri);
+            }
+        }
     }
-    const quads = await parseRdf(serialized, sourceFormat);
-    return await serializeRdf(quads, targetFormat, pretty);
+    return Array.from(imports);
 }
-function replaceRdfExtension(filePath, format) {
-    const parsed = path.parse(filePath);
-    return path.join(parsed.dir, `${parsed.name}.${format}`);
-}
-function entailmentsArtifactPath(assertedPath, format) {
-    const parsed = path.parse(assertedPath);
-    return path.join(parsed.dir, `${parsed.name}__entailments.${format}`);
-}
-function resolveEntailmentsSourcePath(uri) {
-    if (typeof uri !== 'string' || uri.trim().length === 0) {
-        return undefined;
+function sortFilesLeafToRoot(files) {
+    const filesByOntologyIri = new Map();
+    for (const file of files) {
+        filesByOntologyIri.set(file.ontologyIri, file);
+    }
+    const importsByOntologyIri = new Map();
+    for (const file of files) {
+        importsByOntologyIri.set(file.ontologyIri, extractImports(file.content));
+    }
+    const sorted = [];
+    const state = new Map();
+    const sortedRoots = [...filesByOntologyIri.keys()].sort((a, b) => a.localeCompare(b));
+    const visit = (ontologyIri) => {
+        const current = state.get(ontologyIri) ?? 0;
+        if (current === 2) {
+            return;
+        }
+        if (current === 1) {
+            return;
+        }
+        state.set(ontologyIri, 1);
+        for (const importedIri of importsByOntologyIri.get(ontologyIri) ?? []) {
+            if (filesByOntologyIri.has(importedIri)) {
+                visit(importedIri);
+            }
+        }
+        state.set(ontologyIri, 2);
+        const file = filesByOntologyIri.get(ontologyIri);
+        if (file) {
+            sorted.push(file);
+        }
+    };
+    for (const ontologyIri of sortedRoots) {
+        visit(ontologyIri);
     }
+    return sorted;
+}
+function resolveEntailmentsPath(uri) {
     const trimmed = uri.trim();
     if (trimmed.startsWith('file://')) {
-        try {
-            return fileURLToPath(trimmed);
-        }
-        catch {
-            return undefined;
-        }
+        return fileURLToPath(trimmed);
     }
     return trimmed;
 }
-function inferRdfFormatFromPath(filePath) {
-    const extension = path.extname(filePath).toLowerCase();
-    if (extension === '.trig') {
-        return 'trig';
-    }
-    if (extension === '.nt') {
-        return 'nt';
-    }
-    if (extension === '.nq') {
-        return 'nq';
-    }
-    if (extension === '.n3') {
-        return 'n3';
+function modelUriToRelativePath(modelUri) {
+    const trimmed = modelUri.trim();
+    if (trimmed.startsWith('file://')) {
+        const absolute = fileURLToPath(trimmed);
+        const relative = path.relative(process.cwd(), absolute);
+        return relative.length > 0 ? relative : path.basename(absolute);
     }
-    return 'ttl';
+    return trimmed;
 }
 export const reasonAction = async (opts) => {
     const startedAt = Date.now();
     const outputFormat = normalizeRdfFormat(opts.format);
     const pretty = opts.pretty === true;
-    const assertions = await restPost('/v0/assertions', {}, opts.authToken);
+    const assertions = await restPost('/v0/assertions', { format: outputFormat, pretty }, opts.authToken);
     if (!assertions.success) {
-        failCli(chalk.red(assertions.error?.trim() || 'reason failed.'));
+        printLintDiagnostics({
+            success: false,
+            filesChecked: Number(assertions.filesChecked ?? 0),
+            errors: Number(assertions.errors ?? 0),
+            warnings: Number(assertions.warnings ?? 0),
+            problems: assertions.problems,
+        });
+        const summary = assertions.error?.trim() || 'reason failed.';
+        failCli(chalk.red(summary));
     }
     if (assertions.files.length === 0) {
         console.log(chalk.yellow(`No .oml files found under ${path.resolve('.')}.`));
@@ -134,85 +139,84 @@ export const reasonAction = async (opts) => {
     const outputDir = typeof opts.owl === 'string' && opts.owl.trim().length > 0
         ? path.resolve(opts.owl.trim())
         : undefined;
-    const tempRoot = outputDir ?? await fs.mkdtemp(path.join(os.tmpdir(), 'oml-reason-cli-'));
+    const tempRoot = await fs.mkdtemp(path.join(os.tmpdir(), 'oml-reason-cli-'));
     if (outputDir) {
         if (opts.clean === true) {
             await fs.rm(outputDir, { recursive: true, force: true });
         }
-        await fs.mkdir(outputDir, { recursive: true });
     }
-    const inconsistent = [];
-    const failed = [];
-    let entailmentsPersisted = 0;
+    const orderedFiles = sortFilesLeafToRoot(assertions.files);
+    let firstInconsistent;
+    let firstFailure;
+    let entailmentsProduced = 0;
     try {
-        for (const file of assertions.files) {
+        for (const file of orderedFiles) {
             const target = path.join(tempRoot, file.path);
             await fs.mkdir(path.dirname(target), { recursive: true });
-            await fs.writeFile(target, file.content, 'utf-8');
+            await fs.writeFile(target, prettyPrintRdf(file.content, outputFormat), 'utf-8');
         }
-        for (const file of assertions.files) {
+        for (const file of orderedFiles) {
             const target = path.join(tempRoot, file.path);
             try {
                 const result = await checkConsistency({
                     input: target,
                     inputRoot: tempRoot,
-                    explanations: opts.explanation !== false,
-                    uniqueNamesAssumption: opts.uniqueNamesAssumption === true,
+                    explanations: opts.explanation === true,
+                    uniqueNamesAssumption: opts.uniqueNamesAssumption !== false,
                     checkOnly: outputDir === undefined,
                     profile: opts.profile === true,
                     timeout: typeof opts.timeout === 'number' && Number.isFinite(opts.timeout) && opts.timeout > 0
                         ? Math.floor(opts.timeout)
                         : 120000,
                 });
+                if (!result.consistent) {
+                    firstInconsistent = {
+                        file,
+                        result: result,
+                    };
+                    break;
+                }
                 if (outputDir) {
-                    const assertedArtifactPath = replaceRdfExtension(path.join(outputDir, file.path), outputFormat);
-                    await fs.mkdir(path.dirname(assertedArtifactPath), { recursive: true });
-                    const assertedContent = await convertSerializedRdf(file.content, 'nt', outputFormat, pretty);
-                    await fs.writeFile(assertedArtifactPath, assertedContent, 'utf-8');
-                    const entailmentsSourcePath = resolveEntailmentsSourcePath(result.entailmentsUri);
-                    if (!entailmentsSourcePath) {
-                        throw new Error('Reasoner did not return an entailments URI.');
+                    if (typeof result.entailmentsUri !== 'string' || result.entailmentsUri.trim().length === 0) {
+                        throw new Error('Reasoner returned a consistent result but did not provide entailments URI.');
                     }
-                    const entailmentsSerialized = await fs.readFile(entailmentsSourcePath, 'utf-8');
-                    const entailmentsArtifact = entailmentsArtifactPath(assertedArtifactPath, outputFormat);
-                    await fs.mkdir(path.dirname(entailmentsArtifact), { recursive: true });
-                    const entailmentsContent = await convertSerializedRdf(entailmentsSerialized, inferRdfFormatFromPath(entailmentsSourcePath), outputFormat, pretty);
-                    await fs.writeFile(entailmentsArtifact, entailmentsContent, 'utf-8');
-                    entailmentsPersisted += 1;
-                }
-                if (!result.consistent) {
-                    inconsistent.push({
-                        modelUri: file.modelUri,
-                        validationWarnings: Array.isArray(result.reports) ? result.reports : [],
-                    });
+                    if (pretty) {
+                        const entailmentsPath = resolveEntailmentsPath(result.entailmentsUri);
+                        const entailmentsContent = await fs.readFile(entailmentsPath, 'utf-8');
+                        await fs.writeFile(entailmentsPath, prettyPrintRdf(entailmentsContent, outputFormat), 'utf-8');
+                    }
+                    entailmentsProduced += 1;
                 }
             }
             catch (error) {
-                failed.push({
+                firstFailure = {
                     modelUri: file.modelUri,
                     error: error instanceof Error ? error.message : String(error),
-                });
+                };
+                break;
             }
         }
     }
     finally {
-        if (!outputDir) {
-            await fs.rm(tempRoot, { recursive: true, force: true });
+        if (outputDir && !firstFailure && !firstInconsistent) {
+            await fs.mkdir(outputDir, { recursive: true });
+            await fs.cp(tempRoot, outputDir, { recursive: true, force: true });
         }
+        await fs.rm(tempRoot, { recursive: true, force: true });
     }
-    if (failed.length > 0 || inconsistent.length > 0) {
-        for (const item of failed) {
-            const modelUri = String(item.modelUri ?? '').trim();
-            console.log(chalk.red(`reason failed: ${modelUri || '<workspace>'}: ${item.error}`));
-        }
-        for (const item of inconsistent) {
-            const warnings = item.validationWarnings.length > 0 ? ` warnings=${item.validationWarnings.join('; ')}` : '';
-            console.log(chalk.red(`reason inconsistency detected: ${item.modelUri}.${warnings}`));
+    if (firstFailure) {
+        const modelUri = String(firstFailure.modelUri ?? '').trim() || '<workspace>';
+        failCli(chalk.red(`reason failed: ${modelUri}: ${firstFailure.error}`));
+    }
+    if (firstInconsistent) {
+        const where = modelUriToRelativePath(firstInconsistent.file.modelUri);
+        if (opts.explanation === true) {
+            failCli(chalk.red(`Inconsistency found in: ${where}\n${JSON.stringify(firstInconsistent.result, null, 2)}`));
         }
-        failCli(chalk.red('reason failed.'));
+        failCli(chalk.red(`Inconsistency found in: ${where}`));
     }
     if (outputDir) {
-        console.log(chalk.green(`reason: ${assertions.files.length} ontology file(s) reasoned in ${path.relative(process.cwd(), outputDir) || outputDir} (${entailmentsPersisted} entailment artifact file(s) written) [${formatDuration(Date.now() - startedAt)}]`));
+        console.log(chalk.green(`reason: ${assertions.files.length} ontology file(s) reasoned in ${path.relative(process.cwd(), outputDir) || outputDir} (${entailmentsProduced} entailment artifact file(s) written) [${formatDuration(Date.now() - startedAt)}]`));
         return;
     }
     console.log(chalk.green(`reason: ${assertions.files.length} ontology file(s) checked [${formatDuration(Date.now() - startedAt)}]`));

package/out/commands/reason.js.map

@@ -1 +1 @@
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package/out/commands/render.js

@@ -3,6 +3,7 @@ import chalk from 'chalk';
 import * as path from 'node:path';
 import { failCli } from '../cli-error.js';
 import { formatDuration } from '../util.js';
+import { printLintDiagnostics } from './lint.js';
 import { restPost } from './server/rest.js';
 export const renderAction = async (opts) => {
     const renderStartedAt = Date.now();
@@ -10,6 +11,13 @@ export const renderAction = async (opts) => {
         ...opts,
     }, opts.authToken);
     if (!result.success) {
+        printLintDiagnostics({
+            success: false,
+            filesChecked: Number(result.filesChecked ?? 0),
+            errors: Number(result.errors ?? 0),
+            warnings: Number(result.warnings ?? 0),
+            problems: result.problems,
+        });
         failCli(chalk.red(result.error?.trim() || 'render failed.'));
     }
     if (result.filesRendered === 0) {

package/out/commands/render.js.map

@@ -1 +1 @@
-{"version":3,"file":"render.js","sourceRoot":"","sources":["../../src/commands/render.ts"],"names":[],"mappings":"AAAA,qDAAqD;AAErD,OAAO,KAAK,MAAM,OAAO,CAAC;AAC1B,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAClC,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAC;AAC1C,OAAO,EAAE,cAAc,EAAE,MAAM,YAAY,CAAC;AAC5C,OAAO,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AAU5C,MAAM,CAAC,MAAM,YAAY,GAAG,KAAK,EAAE,IAAmB,EAAiB,EAAE;IACrE,MAAM,eAAe,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;IACnC,MAAM,MAAM,GAAG,MAAM,QAAQ,CAK1B,YAAY,EAAE;QACb,GAAG,IAAI;KAC4B,EAAE,IAAI,CAAC,SAAS,CAAC,CAAC;IAEzD,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC;QAClB,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,IAAI,EAAE,IAAI,gBAAgB,CAAC,CAAC,CAAC;IACjE,CAAC;IACD,IAAI,MAAM,CAAC,aAAa,KAAK,CAAC,EAAE,CAAC;QAC7B,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,MAAM,CAAC,0BAA0B,CAAC,CAAC,CAAC;QACtD,OAAO;IACX,CAAC;IACD,MAAM,SAAS,GAAG,MAAM,CAAC,SAAS,IAAI,IAAI,CAAC,GAAG,CAAC;IAC/C,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,KAAK,CAAC,WAAW,MAAM,CAAC,aAAa,iCAAiC,IAAI,CAAC,QAAQ,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,SAAS,CAAC,IAAI,SAAS,KAAK,cAAc,CAAC,IAAI,CAAC,GAAG,EAAE,GAAG,eAAe,CAAC,GAAG,CAAC,CAAC,CAAC;AACvM,CAAC,CAAC"}
+{"version":3,"file":"render.js","sourceRoot":"","sources":["../../src/commands/render.ts"],"names":[],"mappings":"AAAA,qDAAqD;AAErD,OAAO,KAAK,MAAM,OAAO,CAAC;AAC1B,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAClC,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAC;AAC1C,OAAO,EAAE,cAAc,EAAE,MAAM,YAAY,CAAC;AAC5C,OAAO,EAAE,oBAAoB,EAAoB,MAAM,WAAW,CAAC;AACnE,OAAO,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AAU5C,MAAM,CAAC,MAAM,YAAY,GAAG,KAAK,EAAE,IAAmB,EAAiB,EAAE;IACrE,MAAM,eAAe,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;IACnC,MAAM,MAAM,GAAG,MAAM,QAAQ,CAS1B,YAAY,EAAE;QACb,GAAG,IAAI;KAC4B,EAAE,IAAI,CAAC,SAAS,CAAC,CAAC;IAEzD,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC;QAClB,oBAAoB,CAAC;YACjB,OAAO,EAAE,KAAK;YACd,YAAY,EAAE,MAAM,CAAC,MAAM,CAAC,YAAY,IAAI,CAAC,CAAC;YAC9C,MAAM,EAAE,MAAM,CAAC,MAAM,CAAC,MAAM,IAAI,CAAC,CAAC;YAClC,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC,QAAQ,IAAI,CAAC,CAAC;YACtC,QAAQ,EAAE,MAAM,CAAC,QAAQ;SAC5B,CAAC,CAAC;QACH,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,IAAI,EAAE,IAAI,gBAAgB,CAAC,CAAC,CAAC;IACjE,CAAC;IACD,IAAI,MAAM,CAAC,aAAa,KAAK,CAAC,EAAE,CAAC;QAC7B,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,MAAM,CAAC,0BAA0B,CAAC,CAAC,CAAC;QACtD,OAAO;IACX,CAAC;IACD,MAAM,SAAS,GAAG,MAAM,CAAC,SAAS,IAAI,IAAI,CAAC,GAAG,CAAC;IAC/C,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,KAAK,CAAC,WAAW,MAAM,CAAC,aAAa,iCAAiC,IAAI,CAAC,QAAQ,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,SAAS,CAAC,IAAI,SAAS,KAAK,cAAc,CAAC,IAAI,CAAC,GAAG,EAAE,GAAG,eAAe,CAAC,GAAG,CAAC,CAAC,CAAC;AACvM,CAAC,CAAC"}

package/out/commands/server/actions.js

@@ -50,7 +50,7 @@ function parseServerLock(raw) {
         if (pidInt <= 0 || portInt <= 0 || portInt > 65535) {
             return undefined;
         }
-        const owner = parsed.owner === 'daemon' || parsed.owner === 'extension'
+        const owner = parsed.owner === 'cli' || parsed.owner === 'extension'
             ? parsed.owner
             : undefined;
         const workspaceRoot = typeof parsed.workspaceRoot === 'string' && parsed.workspaceRoot.trim().length > 0
@@ -217,7 +217,7 @@ async function inspectListeningProcess(port) {
     catch (error) {
         const failed = error;
         if (failed?.code === 'ENOENT') {
-            throw new Error("Cannot inspect ports because 'lsof' is not installed or not on PATH.");
+            return undefined;
         }
         return typeof failed?.stdout === 'string' ? failed.stdout.trim() : '';
     }
@@ -318,7 +318,7 @@ export async function serverStopAction() {
         return;
     }
     const owner = state.owner ?? 'unknown';
-    if (owner !== 'daemon') {
+    if (owner !== 'cli') {
         process.stdout.write(`Server is running (pid ${state.pid}, port ${state.port}) and managed by ${owner}; not stopping.\n`);
         return;
     }
@@ -341,6 +341,11 @@ export async function serverStatusAction() {
         return;
     }
     const output = await inspectListeningProcess(state.port);
+    if (output === undefined) {
+        const owner = state.owner ?? 'unknown';
+        process.stdout.write(`Server is running on http://${DEFAULT_HOST}:${state.port} (pid ${state.pid}, owner ${owner}).\n`);
+        return;
+    }
     if (!output) {
         process.stdout.write(`No listening process found on port ${state.port}.\n`);
         return;